Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RoW	4975	2021-09-06	2019-05-13	4.5	4.52	4.16	4.2	0.016	1.50	0.0	0.07	14.46	0.01	1.848	45.07	0.00	30.3	68.7	1.0	-6.95	0.81	0.74	—	4.2	0.003	0.66	0.0	0.04	13.70	0.00	1.953	11.64	0.00	13.3	86.6	0.1	-2.25	1.51	0.82	0.73	—	43049	3129	7	0	0	0	20156	logfile
✔	3LoS	5137	2021-09-03	2010-02-04	4.3	2.98	—	3.0	0.008	2.45	224.0	0.19	19.87	0.01	2.259	86.73	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.005	1.23	0.0	0.05	15.67	0.01	2.130	27.58	0.01	21.0	75.3	3.7	-4.16	1.43	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	7KXY	23067	2021-09-02	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.12	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.004	0.86	0.0	0.05	14.43	0.01	2.112	25.89	0.00	16.7	83.3	0.1	-4.83	1.29	0.63	0.61	—	9510	1181	2	0	0	0	0	logfile
✔	5YYS	6859	2021-09-04	2017-12-11	4.2	4.57	—	4.1	0.016	2.28	0.0	0.10	15.30	0.01	2.201	22.17	2.34	27.3	70.1	2.6	-5.98	0.85	0.71	—	4.1	0.016	1.69	4.0	0.06	12.92	0.01	1.940	36.60	0.00	22.6	76.9	0.5	-3.77	1.75	0.83	0.66	—	24044	3244	4	0	0	0	0	logfile
✔	6Z7Q	11112	2021-09-03	2020-06-01	3.8	4.10	3.58	4.0	0.006	0.77	0.0	0.05	14.47	0.00	2.176	20.74	0.00	28.6	70.7	0.7	-6.49	0.73	0.82	1.75	4.0	0.010	1.21	1.0	0.05	17.12	0.01	2.021	21.89	0.64	16.8	83.1	0.0	-4.47	1.21	0.76	0.83	1.14	16665	2080	5	0	0	0	0	logfile
✔	6KiQ	9997	2021-09-03	2019-07-19	3.62	3.66	—	3.8	0.035	3.74	145.0	0.27	19.81	0.04	2.201	10.74	14.75	18.6	70.7	10.7	-6.77	0.58	0.71	1.68	3.5	0.003	0.76	0.0	0.04	17.09	0.01	2.010	11.20	0.36	10.3	89.1	0.6	-2.27	1.22	0.62	0.75	1.16	15093	968	3	0	0	0	7444	logfile
✔	5JUT	6646	2021-09-10	2016-05-10	4.0	4.62	—	3.9	0.019	1.26	2.0	0.14	17.34	0.01	2.191	39.49	10.31	20.7	71.5	7.8	-6.42	0.78	0.60	—	3.7	0.006	0.85	1.0	0.04	17.80	0.01	1.371	30.45	0.28	13.2	85.7	1.1	-3.81	1.04	0.85	0.76	—	215222	12374	84	5568	2	0	0	logfile
✔	5JUo	6648	2021-09-10	2016-05-10	4.0	4.65	—	3.6	0.021	1.30	0.0	0.15	17.54	0.01	1.298	41.10	10.58	20.9	71.5	7.6	-6.44	0.72	0.53	—	3.6	0.007	1.01	3.0	0.05	18.94	0.01	1.839	40.67	0.54	15.8	83.3	0.9	-4.14	0.93	0.81	0.70	—	215363	12391	84	5568	2	0	0	logfile
✔	5JUo	6643	2021-09-10	2016-05-10	4.0	4.68	—	3.8	0.021	1.30	0.0	0.15	17.54	0.01	1.298	41.10	10.58	20.9	71.5	7.6	-6.44	0.74	0.52	—	3.6	0.007	0.89	4.0	0.04	17.70	0.01	1.751	26.86	0.71	14.3	84.6	1.0	-4.31	0.60	0.82	0.69	—	215363	12391	84	5568	2	0	0	logfile
✘	5A7U	3079	2021-09-02	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	28.57	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	6JSi	9882	2021-09-03	2019-04-08	4.7	4.70	—	4.6	0.007	1.49	0.0	0.06	15.33	0.01	2.231	10.63	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	4.6	0.003	0.87	0.0	0.04	12.86	0.01	2.113	15.04	0.00	20.6	78.3	1.1	-3.82	0.76	0.63	0.68	—	62820	5844	9	0	4044	0	0	logfile
✔	6VW2	21410	2021-09-02	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.003	0.79	0.0	0.05	14.59	0.00	2.242	10.76	0.95	17.3	82.7	0.0	-4.93	0.44	0.41	0.71	1.67	1800	240	10	0	0	0	0	logfile
✘	5iMQ	6584	2021-09-12	2016-03-06	3.8	3.95	—	3.9	0.012	1.41	0.0	0.07	20.60	0.01	1.006	62.47	4.55	16.6	72.8	10.6	-4.61	0.71	0.65	0.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	153046	6640	56	4680	1	0	0	logfile
✔	5JUU	6647	2021-09-10	2016-05-10	4.0	4.43	—	3.8	0.019	1.28	0.0	0.14	17.36	0.01	2.266	39.56	11.11	19.9	72.8	7.3	-6.38	0.79	0.65	—	3.6	0.006	0.84	2.0	0.04	17.58	0.01	1.523	30.00	0.25	12.4	86.7	1.0	-3.13	1.77	0.85	0.79	—	215045	12374	84	5566	2	0	0	logfile
✔	7ASK	11895	2021-09-03	2020-10-27	4.3	4.39	—	4.3	0.028	2.99	47.0	0.22	18.83	0.02	0.766	14.44	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.015	1.18	1.0	0.05	15.15	0.01	2.051	19.43	0.00	18.3	80.2	1.5	-3.48	1.39	0.19	0.61	—	12285	1523	1	0	2	0	0	logfile
✔	6Kio	9996	2021-09-03	2019-07-19	3.94	4.22	—	3.9	0.035	3.43	48.0	0.22	17.77	0.04	2.231	10.54	8.39	18.6	74.1	7.3	-6.45	0.56	0.66	1.26	3.8	0.003	0.71	0.0	0.04	17.20	0.00	1.980	10.87	0.12	6.5	93.0	0.4	-1.00	2.14	0.65	0.78	1.17	15091	968	3	0	0	0	7442	logfile
✔	5LY6	4118	2021-09-02	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	93.40	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.79	0.0	0.04	14.06	0.00	2.154	17.17	0.00	10.2	89.6	0.2	-2.54	3.65	0.40	0.75	—	3725	471	1	0	0	0	0	logfile
✔	5G2X	3331	2021-09-04	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.007	1.07	0.0	0.05	20.99	0.01	1.908	50.51	1.13	22.9	75.6	1.5	-4.95	2.49	0.80	0.67	0.91	19072	487	3	704	0	0	0	logfile
✔	3J9Q	6270	2021-09-07	2015-02-17	3.5	3.51	—	3.5	0.008	1.16	0.0	0.06	14.05	0.00	2.284	4.53	8.68	19.1	75.1	5.8	-5.24	0.60	0.82	2.71	3.5	0.004	0.84	0.0	0.05	16.24	0.01	2.059	14.50	0.69	10.6	87.7	1.7	-1.83	1.45	0.61	0.82	2.55	99648	13224	48	0	0	0	0	logfile
✔	5Y5Y	6811	2021-09-05	2017-08-10	4.7	4.66	—	4.6	0.027	2.88	128.0	0.17	18.51	0.03	2.246	4.38	9.44	16.3	75.1	8.6	-5.44	0.70	0.77	—	4.6	0.004	0.91	0.0	0.05	14.99	0.01	2.121	14.86	0.00	9.4	90.2	0.4	-1.18	1.78	0.69	0.81	—	32159	4164	15	0	2	0	0	logfile

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