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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7R6N | 24283 | 2022-12-11 | 2021-06-22 | 4.1 | 3.51 | — | 3.7 | 0.006 | 0.96 | 0.0 | 0.04 | 17.22 | 0.01 | 2.036 | 3.68 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.56 | 0.75 | — | 3.7 | 0.007 | 0.83 | 0.0 | 0.04 | 17.80 | 0.01 | 1.761 | 18.68 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.27 | 0.58 | 0.76 | — | 7588 | 0 | 1 | 354 | 12 | 0 | 0 | logfile |
✔ | 7URi | 26713 | 2022-12-11 | 2022-04-22 | 2.6 | 2.67 | 2.95 | 2.6 | 0.009 | 1.37 | 0.0 | 0.12 | 25.77 | 0.01 | 2.201 | 7.31 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.05 | 0.34 | — | 2.6 | 0.007 | 1.42 | 0.0 | 0.07 | 23.80 | 0.01 | 2.074 | 24.37 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.69 | 0.08 | 0.38 | — | 1905 | 0 | 1 | 90 | 0 | 0 | 0 | logfile |
✔ | 7EZ2 | 31386 | 2022-12-12 | 2021-06-01 | 3.05 | 2.80 | — | 3.0 | 0.005 | 0.56 | 0.0 | 0.03 | 13.90 | 0.00 | 1.809 | 0.92 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.69 | 0.81 | — | 3.0 | 0.007 | 0.84 | 0.0 | 0.05 | 15.80 | 0.01 | 1.754 | 7.22 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.04 | 0.73 | 0.89 | — | 8698 | 0 | 3 | 406 | 31 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2022-12-11 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 13.28 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.006 | 0.88 | 0.0 | 0.04 | 22.86 | 0.01 | 1.817 | 83.53 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.89 | 0.95 | 0.86 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 6PoM | 20416 | 2022-12-11 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 17.29 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.24 | 0.0 | 0.06 | 21.39 | 0.01 | 1.928 | 58.97 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.75 | 0.75 | 0.80 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 7EZ0 | 31385 | 2022-12-12 | 2021-06-01 | 3.14 | 3.26 | — | 3.2 | 0.003 | 0.56 | 0.0 | 0.03 | 14.43 | 0.00 | 1.804 | 2.25 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.74 | 0.79 | — | 3.2 | 0.006 | 0.69 | 0.0 | 0.04 | 15.71 | 0.00 | 1.877 | 8.66 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.91 | 0.77 | 0.86 | — | 8306 | 0 | 1 | 387 | 27 | 0 | 0 | logfile |
✔ | 7XSN | 33428 | 2022-12-11 | 2022-05-14 | 3.01 | 4.02 | 3.04 | 3.2 | 0.013 | 1.06 | 0.0 | 0.05 | 16.67 | 0.01 | 2.252 | 5.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.84 | — | 3.2 | 0.006 | 0.62 | 0.0 | 0.03 | 16.36 | 0.00 | 2.110 | 21.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.27 | 0.92 | 0.87 | — | 8279 | 0 | 1 | 387 | 0 | 0 | 0 | logfile |
✔ | 5G2Y | 3332 | 2022-12-13 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 11.90 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.01 | 0.0 | 0.05 | 23.66 | 0.01 | 1.957 | 72.02 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.26 | 0.89 | 0.78 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 6oEH | 20020 | 2022-12-17 | 2019-03-27 | 3.8 | 3.93 | — | 3.7 | 0.010 | 1.38 | 0.0 | 0.07 | 11.62 | 0.01 | 2.381 | 2.81 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.38 | 0.77 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.04 | 5.09 | 0.00 | 2.203 | 12.25 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.52 | 0.40 | 0.80 | — | 32900 | 0 | 14 | 0 | 6580 | 0 | 0 | logfile |
✔ | 6UET | 20756 | 2022-12-11 | 2019-09-23 | 4.1 | 4.91 | — | 5.1 | 0.010 | 1.61 | 0.0 | 0.07 | 15.67 | 0.02 | 1.977 | 4.88 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.62 | 0.73 | — | 5.0 | 0.007 | 0.96 | 0.0 | 0.05 | 22.24 | 0.01 | 1.829 | 50.36 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.76 | 0.66 | 0.81 | — | 3869 | 0 | 1 | 119 | 1 | 0 | 1291 | logfile |
✔ | 7PTL | 13630 | 2022-12-14 | 2021-09-27 | 4.9 | 10.06 | 4.96 | — | 0.005 | 1.01 | 0.0 | 0.06 | 16.11 | 0.01 | 2.401 | 0.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.79 | — | — | 0.007 | 0.89 | 0.0 | 0.04 | 21.16 | 0.01 | 1.741 | 84.45 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.51 | 0.92 | 0.92 | — | 23080 | 0 | 1 | 720 | 0 | 0 | 7743 | logfile |
✔ | 3J2P | 5499 | 2022-12-12 | 2012-11-30 | 3.6 | 3.28 | — | 3.4 | 0.009 | 1.92 | 0.0 | 0.12 | 17.49 | 0.02 | 2.155 | 110.43 | 20.13 | 29.7 | 46.3 | 24.1 | -7.75 | 0.42 | 0.79 | 1.08 | 3.3 | 0.003 | 0.89 | 0.0 | 0.04 | 17.76 | 0.00 | 1.885 | 69.47 | 0.94 | 17.9 | 78.7 | 3.5 | -4.28 | 0.92 | 0.38 | 0.72 | 1.06 | 9890 | 1134 | 8 | 0 | 6 | 0 | 1086 | logfile |
✔ | 7DA4 | 30622 | 2022-12-11 | 2020-10-14 | 4.24 | 3.75 | — | 4.2 | 0.010 | 1.54 | 0.0 | 0.08 | 17.16 | 0.01 | 2.245 | 79.80 | 0.00 | 50.0 | 50.0 | 0.0 | -8.65 | 0.39 | 0.66 | — | 4.3 | 0.004 | 0.95 | 0.0 | 0.04 | 11.56 | 0.00 | 2.266 | 19.19 | 0.00 | 18.3 | 81.7 | 0.0 | -5.96 | 3.11 | 0.36 | 0.58 | — | 507 | 66 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V49 | 31704 | 2022-12-11 | 2021-08-12 | 3.4 | 3.45 | — | 4.1 | 0.007 | 1.01 | 0.0 | 0.06 | 13.70 | 0.00 | 2.279 | 22.06 | 0.00 | 39.7 | 60.3 | 0.0 | -7.67 | 0.33 | 0.73 | 5.03 | 4.1 | 0.003 | 0.75 | 0.0 | 0.05 | 15.37 | 0.00 | 2.440 | 9.23 | 0.00 | 15.5 | 84.5 | 0.0 | -5.85 | 1.27 | 0.46 | 0.75 | 5.63 | 1221 | 180 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L7H | 23212 | 2022-12-11 | 2020-12-28 | 4.0 | 2.39 | — | 4.0 | 0.008 | 1.47 | 0.0 | 0.08 | 15.10 | 0.01 | 2.199 | 13.87 | 3.53 | 36.3 | 63.7 | 0.0 | -6.00 | 0.47 | 0.60 | — | 4.0 | 0.005 | 0.99 | 0.0 | 0.06 | 16.55 | 0.00 | 2.113 | 18.49 | 1.96 | 32.1 | 67.9 | 0.0 | -4.69 | 0.91 | 0.51 | 0.65 | — | 2430 | 352 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oSM | 20186 | 2022-12-18 | 2019-05-01 | 3.4 | 3.31 | — | 3.4 | 0.012 | 1.45 | 0.0 | 0.09 | 14.06 | 0.00 | 2.183 | 28.91 | 14.88 | 34.5 | 65.5 | 0.0 | -5.34 | 0.46 | 0.74 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4100 | 600 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RoW | 4975 | 2022-12-21 | 2019-05-13 | 4.5 | 4.52 | 4.16 | 4.2 | 0.016 | 1.50 | 0.0 | 0.07 | 14.46 | 0.01 | 1.848 | 49.68 | 0.00 | 30.3 | 68.7 | 1.0 | -6.95 | 0.81 | 0.74 | — | 4.2 | 0.004 | 0.68 | 0.0 | 0.04 | 13.64 | 0.00 | 1.954 | 12.74 | 0.10 | 13.9 | 86.0 | 0.2 | -2.58 | 1.03 | 0.82 | 0.73 | — | 43049 | 3129 | 7 | 0 | 0 | 0 | 20156 | logfile |
✔ | 3LoS | 5137 | 2022-12-12 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.004 | 1.15 | 0.0 | 0.05 | 15.79 | 0.01 | 2.143 | 26.45 | 0.01 | 19.2 | 76.6 | 4.1 | -4.17 | 1.41 | 0.61 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KXY | 23067 | 2022-12-12 | 2020-12-05 | 4.4 | 4.55 | 4.44 | 4.5 | 0.004 | 0.82 | 0.0 | 0.05 | 15.13 | 0.01 | 2.197 | 19.44 | 7.18 | 26.0 | 69.8 | 4.2 | -5.90 | 0.63 | 0.60 | — | 4.5 | 0.004 | 0.88 | 0.0 | 0.05 | 14.71 | 0.01 | 2.101 | 25.46 | 0.00 | 18.3 | 81.6 | 0.1 | -4.95 | 0.63 | 0.63 | 0.61 | — | 9510 | 1181 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5YYS | 6859 | 2022-12-15 | 2017-12-11 | 4.2 | 4.57 | — | 4.1 | 0.016 | 2.26 | 0.0 | 0.10 | 15.30 | 0.01 | 2.201 | 22.76 | 2.34 | 27.3 | 70.1 | 2.6 | -5.98 | 0.85 | 0.71 | — | 4.1 | 0.004 | 1.30 | 0.0 | 0.06 | 12.61 | 0.01 | 2.137 | 30.23 | 0.00 | 21.8 | 77.7 | 0.5 | -3.85 | 1.67 | 0.86 | 0.72 | — | 24044 | 3244 | 4 | 0 | 0 | 0 | 0 | logfile |