Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XD4	33135	2023-09-29	2022-03-26	3.89	4.13	—	3.8	0.003	0.59	0.0	0.03	15.73	0.00	1.880	1.73	0.00	0.0	0.0	0.0	—	0.85	0.73	—	3.8	0.007	0.78	0.0	0.04	17.52	0.01	1.755	18.36	0.00	0.0	0.0	0.0	—	1.84	0.87	0.78	—	9062	0	1	423	28	0	0	logfile
✔	8DST	27688	2023-09-27	2022-07-22	3.2	2.71	2.73	3.4	0.046	2.10	0.0	0.03	22.27	0.00	2.205	41.47	0.00	0.0	0.0	0.0	—	0.44	0.57	—	2.4	0.136	9.30	191.0	0.34	28.93	0.03	1.065	133.79	0.00	0.0	0.0	0.0	—	2.16	0.55	0.80	—	3078	0	54	0	270	0	0	logfile
✔	7T6E	25714	2023-09-27	2021-12-13	3.1	3.11	—	3.1	0.129	5.90	125.0	0.23	23.20	0.02	2.041	30.29	0.00	0.0	0.0	0.0	—	0.60	0.87	—	3.1	0.122	5.61	134.0	0.36	21.80	0.02	2.082	31.46	0.00	0.0	0.0	0.0	—	0.19	0.66	0.90	—	3480	0	60	0	300	0	0	logfile
✔	7YGB	33814	2023-09-29	2022-07-11	2.62	3.15	2.70	2.9	0.007	0.52	0.0	0.03	14.46	0.00	2.079	13.50	0.00	0.0	0.0	0.0	—	0.88	0.84	—	2.9	0.007	0.64	0.0	0.04	14.93	0.00	1.835	13.50	0.00	0.0	0.0	0.0	—	0.87	0.90	0.91	—	8738	0	5	407	54	0	0	logfile
✔	7SAM	24952	2023-09-28	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.89	0.0	0.04	22.81	0.01	1.797	83.72	0.00	0.0	0.0	0.0	—	5.81	0.96	0.88	—	5399	0	1	169	0	0	1802	logfile
✔	7XD3	33134	2023-09-29	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	16.04	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.007	0.80	0.0	0.04	17.33	0.01	1.680	17.06	0.00	0.0	0.0	0.0	—	1.79	0.87	0.82	—	9062	0	1	423	28	0	0	logfile
✔	7UR5	26705	2023-09-28	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	25.09	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.006	0.88	0.0	0.05	20.44	0.01	2.010	16.03	0.00	0.0	0.0	0.0	—	1.86	0.08	0.66	—	5709	0	3	270	0	0	0	logfile
✔	7URi	26713	2023-09-27	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	24.06	0.01	2.073	23.33	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7URM	26714	2023-09-27	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.16	0.0	0.05	22.80	0.01	1.988	29.25	0.00	0.0	0.0	0.0	—	1.68	0.15	0.54	—	1905	0	1	90	0	0	0	logfile
✔	7YG8	33811	2023-09-29	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	14.91	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.006	0.65	0.0	0.04	16.08	0.00	1.846	19.87	0.00	0.0	0.0	0.0	—	0.38	0.91	0.89	—	8440	0	3	395	5	0	0	logfile
✔	7YCG	33738	2023-09-29	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	14.85	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.67	0.0	0.04	15.91	0.00	1.847	33.58	0.00	0.0	0.0	0.0	—	0.32	0.95	0.90	—	8661	0	2	404	4	0	0	logfile
✔	7EZ2	31386	2023-09-29	2021-06-01	3.05	2.80	—	3.0	0.005	0.56	0.0	0.03	13.92	0.00	1.809	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	3.0	0.007	0.85	0.0	0.05	15.77	0.01	1.757	7.36	0.00	0.0	0.0	0.0	—	1.04	0.73	0.89	—	8698	0	3	406	31	0	0	logfile
✔	7EZ0	31385	2023-09-28	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	14.43	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.006	0.68	0.0	0.04	15.56	0.00	1.860	8.26	0.00	0.0	0.0	0.0	—	1.91	0.76	0.85	—	8306	0	1	387	27	0	0	logfile
✔	7XD7	33138	2023-09-29	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	14.03	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.007	0.67	0.0	0.04	15.11	0.00	1.866	7.88	0.00	0.0	0.0	0.0	—	2.19	0.92	0.92	—	8693	0	1	405	30	0	0	logfile
✔	3J2P	5499	2023-09-29	2012-11-30	3.6	3.28	—	3.4	0.010	1.92	0.0	0.12	17.56	0.02	2.155	110.32	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.003	0.89	0.0	0.04	17.84	0.00	1.911	69.53	1.47	18.7	77.9	3.4	-4.26	0.93	0.38	0.72	0.85	9890	1134	8	0	6	0	1086	logfile
✔	7DA4	30622	2023-09-27	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.94	0.0	0.04	10.84	0.00	2.229	17.17	0.00	21.7	78.3	0.0	-5.61	3.07	0.36	0.60	—	507	66	3	0	0	0	0	logfile
✔	7V49	31704	2023-09-27	2021-08-12	3.4	3.45	—	4.1	0.007	1.01	0.0	0.06	13.70	0.00	2.279	22.06	0.00	39.7	60.3	0.0	-7.67	0.33	0.73	5.03	4.1	0.003	0.73	0.0	0.05	14.81	0.00	2.500	7.22	0.00	13.2	86.8	0.0	-5.75	1.27	0.31	0.69	4.86	1221	180	3	0	0	0	0	logfile
✔	7L7H	23212	2023-09-27	2020-12-28	4.0	2.39	—	4.0	0.008	1.47	0.0	0.08	15.10	0.01	2.199	13.87	3.53	36.3	63.7	0.0	-6.00	0.47	0.60	—	4.0	0.004	0.94	0.0	0.06	16.29	0.00	2.073	19.50	1.96	27.7	72.3	0.0	-4.33	0.93	0.51	0.65	—	2430	352	8	0	0	0	0	logfile
✔	3J06	5185	2023-09-30	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.08	0.01	1.607	79.64	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.2	0.003	0.88	0.0	0.04	20.32	0.01	2.209	17.76	0.98	6.9	91.2	1.8	-3.04	1.28	0.55	0.78	2.20	62916	7595	98	147	0	0	0	logfile
✔	6oSM	20186	2023-09-27	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	3.4	0.007	1.25	0.0	0.07	15.44	0.00	2.184	23.54	1.46	28.1	71.9	0.0	-5.14	3.39	0.44	0.75	3.23	4100	600	10	0	0	0	0	logfile

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