Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BW8	30230	2021-12-01	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	49.64	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.003	0.93	0.0	0.05	18.20	0.01	2.199	20.56	0.74	12.0	88.0	0.0	-3.10	1.56	0.68	0.63	0.49	6021	737	3	0	0	0	0	logfile
✔	7N64	24193	2021-12-01	2021-06-07	4.2	3.94	—	3.9	0.009	1.04	0.0	0.06	15.15	0.01	2.157	36.86	1.78	20.8	78.9	0.3	-3.80	0.65	0.71	—	3.9	0.004	0.82	0.0	0.05	13.98	0.01	2.012	20.49	0.00	12.3	87.6	0.1	-2.80	0.99	0.63	0.69	—	7189	906	7	0	7	0	0	logfile
✔	6SHS	10204	2021-12-01	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.003	0.65	0.0	0.05	12.94	0.00	2.245	6.84	0.00	16.4	83.6	0.0	-5.45	1.71	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✔	3JD8	6640	2021-12-02	2016-05-01	4.43	4.58	—	4.4	0.015	1.54	5.0	0.13	16.74	0.02	1.335	78.00	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.004	0.86	0.0	0.05	12.39	0.00	2.043	17.95	0.00	8.6	90.5	0.9	-0.81	1.76	0.57	0.72	—	8050	1133	1	0	25	0	0	logfile
✔	6oSJ	20183	2021-12-01	2019-05-01	2.8	2.81	—	2.8	0.011	1.13	0.0	0.07	13.69	0.00	2.227	10.71	0.00	18.6	79.7	1.7	-4.71	0.50	0.78	4.82	2.8	0.003	0.75	0.0	0.06	16.79	0.00	2.235	9.22	5.81	13.4	86.6	0.0	-3.82	0.47	0.52	0.79	4.30	4210	610	10	0	0	0	0	logfile
✔	7CAH	30331	2021-12-01	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.79	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.003	0.76	0.0	0.05	14.99	0.01	2.233	15.81	0.74	12.6	87.4	0.0	-3.53	0.55	0.69	0.64	2.17	2889	404	3	0	0	0	0	logfile
✔	6TNG	10532	2021-12-01	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.006	1.02	0.0	0.00	7.42	0.01	2.133	21.25	0.00	25.4	74.3	0.3	-3.93	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	6GTD	0062	2021-12-01	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.66	—	3.9	0.006	0.87	0.0	0.06	20.44	0.00	1.993	20.74	0.00	19.9	80.1	0.0	-3.31	0.98	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	6B19	7031	2021-12-01	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	6.45	0.01	2.201	16.18	0.00	19.4	80.5	0.1	-5.73	0.74	0.64	—	4.4	0.003	0.87	0.0	0.04	13.09	0.00	1.943	28.42	0.00	24.5	75.5	0.0	-5.38	1.33	0.78	0.68	—	5699	907	4	38	0	0	409	logfile
✔	7BZW	30261	2021-12-01	2020-04-28	4.6	7.66	4.73	6.0	0.003	0.82	0.0	0.05	15.82	0.01	2.176	28.88	0.00	19.4	80.6	0.0	-5.59	0.85	0.67	—	6.5	0.003	0.87	0.0	0.06	14.64	0.01	2.267	19.17	0.00	16.2	83.8	0.0	-2.75	1.57	0.93	0.86	—	9756	1212	12	0	0	0	0	logfile
✔	6EK5	3521	2021-12-01	2017-09-25	4.2	4.30	4.14	4.3	0.004	1.20	0.0	0.06	10.40	0.01	2.104	10.95	0.61	19.3	80.6	0.1	-5.33	0.65	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	165959	20300	110	0	0	0	0	logfile
✔	7FG3	31577	2021-12-01	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.23	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.009	0.98	0.0	0.05	16.79	0.01	2.094	23.98	0.30	15.7	83.7	0.6	-3.71	0.78	0.23	0.45	0.29	9054	1166	2	0	0	0	0	logfile
✔	5JUL	8177	2021-12-01	2016-05-10	4.4	4.41	—	4.3	0.012	1.51	16.0	0.06	10.59	0.01	1.568	34.11	0.18	16.6	80.8	2.5	-4.96	0.67	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	161200	19728	32	0	16	0	0	logfile
✔	6RTB	4996	2021-12-01	2019-05-22	3.46	3.57	—	3.5	0.009	1.23	0.0	0.07	15.08	0.01	2.122	6.27	2.61	18.9	80.9	0.2	-4.64	0.62	0.79	4.22	3.5	0.006	0.85	0.0	0.05	16.16	0.00	2.105	17.65	0.65	22.1	77.9	0.0	-4.34	0.89	0.63	0.81	4.18	4681	699	10	0	0	0	0	logfile
✔	6NY1	8994	2021-12-01	2019-02-10	4.2	4.56	—	4.3	0.007	1.11	0.0	0.06	21.20	0.01	2.099	9.52	0.33	18.6	81.0	0.4	-4.84	0.80	0.80	—	4.4	0.003	0.74	0.0	0.04	20.33	0.00	2.151	16.61	0.17	17.1	82.8	0.1	-2.24	0.57	0.79	0.79	—	9911	783	4	154	121	0	0	logfile
✔	6BX3	7303	2021-12-02	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.88	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.003	0.86	0.0	0.05	13.15	0.00	2.112	20.93	0.00	17.0	82.9	0.1	-3.58	1.39	0.74	0.72	—	10456	1413	7	0	0	0	0	logfile
✔	5XLP	6731	2021-12-01	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	14.75	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.2	0.013	1.39	0.0	0.05	16.16	0.01	1.225	26.13	0.11	16.4	83.3	0.3	-4.10	2.32	0.65	0.63	—	9952	1343	6	24	0	0	0	logfile
✔	6TNF	10531	2021-12-01	2019-12-07	3.8	2.90	3.67	2.7	0.034	1.65	0.0	0.27	15.46	0.01	2.236	8.40	0.00	17.8	81.5	0.7	-5.32	0.60	0.56	—	2.7	0.003	0.83	0.0	0.06	12.92	0.00	2.186	8.27	0.00	15.8	84.2	0.0	-2.26	0.51	0.65	0.63	—	9559	2206	5	0	66	0	0	logfile
✔	6WUN	21917	2021-12-01	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.005	0.83	0.0	0.04	14.96	0.00	2.101	13.17	0.09	17.2	82.6	0.2	-4.00	0.56	0.68	0.80	1.50	10082	1326	4	0	0	0	0	logfile
✔	7FG2	31574	2021-12-01	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.59	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.003	0.77	0.0	0.05	14.71	0.00	2.116	18.54	0.00	13.7	86.0	0.3	-2.76	0.71	0.37	0.63	—	9342	1202	2	0	0	0	0	logfile

• ← previous
• Page 2 of 85
• next →