Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RoW	4975	2021-06-04	2019-05-13	4.5	4.52	4.16	4.2	0.016	1.50	0.0	0.07	14.46	0.01	1.848	45.07	0.00	30.3	68.7	1.0	-6.95	0.81	0.74	—	4.2	0.003	0.67	0.0	0.04	13.64	0.00	1.924	11.97	0.10	12.0	87.9	0.1	-1.81	1.53	0.81	0.73	—	43049	3129	7	0	0	0	20156	logfile
✔	3LoS	5137	2021-06-05	2010-02-04	4.3	2.98	—	3.0	0.008	2.45	224.0	0.19	19.87	0.01	2.259	86.73	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.0	0.005	1.23	0.0	0.05	16.28	0.01	2.105	29.24	0.00	20.8	75.3	3.9	-4.27	1.40	0.62	0.56	—	63712	8512	16	0	0	0	0	logfile
✔	7KXY	23067	2021-06-01	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.12	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.004	0.90	0.0	0.05	14.56	0.01	2.043	27.65	0.00	18.0	82.0	0.1	-4.64	1.31	0.64	0.62	—	9510	1181	2	0	0	0	0	logfile
✔	5YYS	6859	2021-06-03	2017-12-11	4.2	4.57	—	4.1	0.016	2.28	0.0	0.10	15.30	0.01	2.201	22.17	2.34	27.3	70.1	2.6	-5.98	0.85	0.71	—	4.1	0.005	1.21	0.0	0.06	12.77	0.01	2.121	30.34	0.00	21.3	78.1	0.5	-3.44	1.80	0.84	0.68	—	24044	3244	4	0	0	0	0	logfile
✔	6KiQ	9997	2021-06-02	2019-07-19	3.62	3.66	—	3.8	0.035	3.74	145.0	0.27	19.81	0.04	2.201	10.74	14.75	18.6	70.7	10.7	-6.77	0.58	0.71	1.68	3.5	0.003	0.79	0.0	0.04	17.32	0.01	2.015	12.07	0.24	9.7	89.7	0.6	-2.67	1.22	0.63	0.75	1.14	15093	968	3	0	0	0	7444	logfile
✔	6Z7Q	11112	2021-06-02	2020-06-01	3.8	4.10	3.58	4.0	0.006	0.77	0.0	0.05	14.47	0.00	2.176	20.74	0.00	28.6	70.7	0.7	-6.49	0.73	0.82	1.75	4.0	0.004	0.91	0.0	0.04	16.97	0.01	2.216	16.72	0.53	14.4	85.6	0.0	-4.16	1.26	0.75	0.81	0.97	16665	2080	5	0	0	0	0	logfile
✔	5JUT	6646	2021-06-03	2016-05-10	4.0	4.62	—	3.9	0.019	1.26	2.0	0.14	17.34	0.01	2.191	39.49	10.31	20.7	71.5	7.8	-6.42	0.78	0.60	—	3.7	0.003	0.75	1.0	0.04	17.54	0.01	1.886	23.93	0.55	11.9	87.2	1.0	-3.16	0.69	0.85	0.75	—	215222	12374	84	5568	2	0	0	logfile
✔	5JUo	6643	2021-06-03	2016-05-10	4.0	4.68	—	3.8	0.021	1.30	0.0	0.15	17.54	0.01	1.298	41.10	10.58	20.9	71.5	7.6	-6.44	0.74	0.52	—	3.6	0.006	0.91	5.0	0.05	17.89	0.01	0.300	30.69	0.28	15.0	83.8	1.1	-4.51	1.04	0.82	0.70	—	215363	12391	84	5568	2	0	0	logfile
✔	5JUo	6648	2021-06-03	2016-05-10	4.0	4.65	—	3.6	0.021	1.30	0.0	0.15	17.54	0.01	1.298	41.10	10.58	20.9	71.5	7.6	-6.44	0.72	0.53	—	3.6	0.005	0.86	3.0	0.04	18.90	0.01	1.189	28.97	0.55	12.7	86.4	0.8	-3.57	1.07	0.81	0.69	—	215363	12391	84	5568	2	0	0	logfile
✘	5A7U	3079	2021-06-01	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	28.57	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	6JSi	9882	2021-06-05	2019-04-08	4.7	4.70	—	4.6	0.007	1.49	0.0	0.06	15.33	0.01	2.231	10.63	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	4.6	0.003	0.87	0.0	0.04	12.58	0.01	2.096	14.46	0.00	20.6	78.4	1.1	-3.67	0.77	0.62	0.68	—	62820	5844	9	0	4044	0	0	logfile
✔	6VW2	21410	2021-06-01	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.006	1.03	0.0	0.06	15.37	0.00	2.136	18.60	0.48	17.7	82.3	0.0	-5.00	0.45	0.42	0.74	2.00	1800	240	10	0	0	0	0	logfile
✘	5iMQ	6584	2021-06-05	2016-03-06	3.8	3.95	—	3.9	0.012	1.41	0.0	0.07	20.60	0.01	1.006	62.47	4.55	16.6	72.8	10.6	-4.61	0.71	0.65	0.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	153046	6640	56	4680	1	0	0	logfile
✔	5JUU	6647	2021-06-03	2016-05-10	4.0	4.43	—	3.8	0.019	1.28	0.0	0.14	17.36	0.01	2.266	39.56	11.11	19.9	72.8	7.3	-6.38	0.79	0.65	—	3.6	0.005	0.78	0.0	0.04	17.40	0.01	1.823	22.72	0.45	11.6	87.4	1.0	-3.30	1.76	0.85	0.79	—	215045	12374	84	5566	2	0	0	logfile
✔	7ASK	11895	2021-06-02	2020-10-27	4.3	4.39	—	4.3	0.028	2.99	47.0	0.22	18.83	0.02	0.766	14.44	2.58	16.8	73.6	9.7	-6.07	0.17	0.51	—	4.3	0.015	1.17	2.0	0.05	15.48	0.01	2.032	18.82	0.00	17.4	80.8	1.7	-3.46	2.19	0.19	0.61	—	12285	1523	1	0	2	0	0	logfile
✔	4V91	2599	2021-06-05	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	19.16	12.79	15.8	74.0	10.2	-5.88	0.33	0.36	0.15	3.8	0.040	1.52	0.0	0.04	17.34	0.02	2.038	15.93	0.97	9.5	89.4	1.1	-2.61	1.97	0.63	0.82	1.61	125665	6450	45	3482	0	0	0	logfile
✔	6Kio	9996	2021-06-02	2019-07-19	3.94	4.22	—	3.9	0.035	3.43	48.0	0.22	17.77	0.04	2.231	10.54	8.39	18.6	74.1	7.3	-6.45	0.56	0.66	1.26	3.8	0.003	0.72	0.0	0.04	17.50	0.00	2.011	11.01	0.00	6.8	92.8	0.4	-0.96	1.73	0.64	0.77	1.28	15091	968	3	0	0	0	7442	logfile
✔	5LY6	4118	2021-06-01	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	93.40	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.79	0.0	0.04	14.11	0.00	2.179	15.41	0.00	8.7	91.0	0.2	-2.16	2.68	0.40	0.75	—	3725	471	1	0	0	0	0	logfile
✘	5G2X	3331	2021-06-02	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19072	487	3	704	0	0	0	logfile
✔	5Y5Y	6811	2021-06-04	2017-08-10	4.7	4.66	—	4.6	0.027	2.88	128.0	0.17	18.51	0.03	2.246	4.38	9.44	16.3	75.1	8.6	-5.44	0.70	0.77	—	4.6	0.003	0.87	0.0	0.04	15.15	0.01	2.115	13.91	0.03	7.9	91.7	0.4	-1.23	1.79	0.69	0.80	—	32159	4164	15	0	2	0	0	logfile

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