Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CET	7465	2023-04-23	2018-02-12	4.4	4.41	—	4.3	0.007	1.42	0.0	0.07	13.40	0.01	2.251	8.50	0.96	19.7	80.1	0.2	-5.52	0.67	0.62	—	4.3	0.004	0.94	0.0	0.05	14.01	0.01	2.112	19.33	0.06	18.7	81.3	0.0	-3.78	1.59	0.68	0.63	—	14012	1741	3	0	0	0	0	logfile
✔	6GTD	0062	2023-04-20	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.8	0.008	0.99	0.0	0.07	20.73	0.00	1.909	27.42	0.00	22.2	77.8	0.0	-3.42	0.97	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	6oF2	20040	2023-04-22	2019-03-28	2.9	2.77	—	3.7	0.006	1.00	0.0	0.05	14.63	0.01	2.062	8.80	1.02	17.7	80.2	2.2	-4.30	0.69	0.63	0.25	3.4	0.004	0.81	0.0	0.04	17.12	0.01	1.964	10.21	2.71	8.0	92.0	0.0	0.24	1.60	0.79	0.83	1.80	11062	1422	6	0	4	0	0	logfile
✔	6TNG	10532	2023-04-20	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.004	0.85	0.0	0.00	6.39	0.00	2.200	10.87	0.00	22.8	77.1	0.1	-3.08	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	7JMN	22397	2023-04-22	2020-08-02	3.58	3.99	—	3.8	0.004	0.83	0.0	0.05	14.64	0.01	2.115	11.08	0.07	19.3	80.2	0.6	-5.81	0.79	0.78	1.61	3.8	0.003	0.84	0.0	0.04	16.33	0.00	2.188	10.25	0.21	15.5	84.2	0.3	-3.53	1.24	0.78	0.77	1.31	13633	1756	5	0	52	0	0	logfile
✔	7X7N	33042	2023-04-27	2022-03-10	4.47	4.03	4.49	4.2	0.013	1.05	0.0	0.06	14.55	0.01	1.956	29.11	0.52	19.6	80.3	0.1	-5.63	0.73	0.77	—	4.1	0.003	0.75	0.0	0.05	14.04	0.00	1.251	13.68	0.00	8.8	91.2	0.0	-2.53	0.76	0.72	0.76	—	26493	3314	12	0	45	0	0	logfile
✔	6B19	7031	2023-04-20	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	6.45	0.01	2.201	16.18	0.00	19.4	80.5	0.1	-5.73	0.74	0.63	—	4.4	0.003	0.84	0.0	0.04	12.73	0.00	1.937	28.68	0.00	25.4	74.6	0.0	-4.85	1.32	0.78	0.68	—	5699	907	4	38	0	0	409	logfile
✔	6WHX	21679	2023-04-26	2020-04-08	4.09	4.50	—	4.4	0.007	0.87	0.0	0.05	14.57	0.01	2.048	18.82	0.13	19.4	80.6	0.0	-5.50	0.59	0.70	—	4.4	0.003	0.68	0.0	0.04	13.51	0.00	2.134	10.81	0.00	8.8	91.1	0.0	-2.12	0.56	0.61	0.74	—	22925	3154	8	0	4	0	0	logfile
✔	7BZW	30261	2023-04-21	2020-04-28	4.6	7.66	4.73	6.0	0.003	0.82	0.0	0.05	15.82	0.01	2.176	28.88	0.00	19.4	80.6	0.0	-5.59	0.85	0.67	—	6.5	0.003	0.82	0.0	0.05	14.68	0.01	1.922	20.13	0.00	19.3	80.7	0.0	-2.79	1.80	0.93	0.86	—	9756	1212	12	0	0	0	0	logfile
✔	6EZo	4162	2023-04-24	2017-11-16	4.1	4.20	4.05	4.2	0.008	1.36	4.0	0.09	10.29	0.01	1.569	8.78	3.41	18.5	80.8	0.8	-5.42	0.78	0.79	—	4.1	0.008	0.97	0.0	0.05	10.23	0.01	1.979	9.01	0.00	23.2	76.5	0.3	-4.02	0.46	0.78	0.78	—	18758	3367	11	0	1	0	0	logfile
✔	7FG3	31577	2023-04-21	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.92	0.0	0.05	16.64	0.01	2.088	24.71	0.10	15.3	84.1	0.5	-3.68	0.78	0.23	0.45	0.35	9054	1166	2	0	0	0	0	logfile
✘	6SW9	10320	2023-04-26	2019-09-20	4.2	5.88	4.46	3.0	0.016	1.26	0.0	0.06	18.23	0.04	1.769	31.76	0.80	19.0	80.8	0.2	-5.60	0.85	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70661	4508	47	1593	41	42	0	logfile
✔	7DGZ	30676	2023-04-21	2020-11-12	3.8	4.12	—	4.0	0.008	1.43	3.0	0.07	12.24	0.01	1.238	9.03	1.31	17.6	80.9	1.5	-6.15	0.80	0.71	1.44	3.9	0.003	0.87	0.0	0.04	14.39	0.01	2.084	11.40	0.37	14.7	85.1	0.3	-3.35	1.61	0.82	0.73	0.56	60921	7992	61	0	21	0	0	logfile
✔	6B40	7046	2023-04-23	2017-09-25	4.3	4.48	—	4.4	0.007	1.13	0.0	0.06	16.61	0.01	2.269	8.08	0.00	18.8	81.0	0.2	-5.22	0.76	0.70	—	4.4	0.003	0.79	0.0	0.04	17.69	0.01	2.079	18.20	0.00	16.2	83.8	0.0	-3.25	2.12	0.80	0.77	—	16202	1800	12	100	42	0	0	logfile
✔	6NY1	8994	2023-04-21	2019-02-10	4.2	4.56	—	4.3	0.007	1.11	0.0	0.06	21.20	0.01	2.099	9.52	0.33	18.6	81.0	0.4	-4.84	0.80	0.80	—	4.4	0.003	0.72	0.0	0.04	20.36	0.00	2.150	15.20	0.00	16.3	83.6	0.1	-2.23	0.59	0.79	0.78	—	9911	783	4	154	121	0	0	logfile
✔	5MKE	3523	2023-04-24	2016-12-04	4.3	4.44	—	4.3	0.010	1.25	8.0	0.07	13.69	0.01	1.806	56.89	0.82	18.5	81.1	0.5	-5.74	0.63	0.63	—	4.4	0.004	0.87	0.0	0.05	14.65	0.00	2.069	25.59	0.00	10.1	89.9	0.0	-3.16	0.91	0.64	0.68	—	16426	1908	11	0	34	0	0	logfile
✘	7X26	32959	2023-04-20	2022-02-25	3.685	3.39	—	3.9	0.011	1.46	1.0	0.09	14.53	0.01	2.186	10.90	9.27	16.2	81.1	2.7	-3.21	0.68	0.74	2.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4828	641	3	0	0	0	0	logfile
✔	6BX3	7303	2023-04-21	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.88	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.004	0.86	0.0	0.05	13.11	0.00	2.070	24.58	0.00	17.2	82.7	0.1	-3.48	1.39	0.74	0.72	—	10456	1413	7	0	0	0	0	logfile
✔	6PiF	20349	2023-04-28	2019-06-26	3.4	3.57	3.44	3.5	0.014	1.74	2.0	0.09	16.21	0.00	1.256	6.99	2.17	14.8	81.3	3.9	-4.83	0.64	0.76	2.73	3.5	0.004	0.85	1.0	0.04	16.99	0.00	2.057	11.76	0.36	15.1	84.4	0.5	-2.84	1.57	0.72	0.85	2.29	28954	3448	11	60	0	0	0	logfile
✔	6GJ1	0009	2023-04-22	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.57	0.01	2.086	22.39	0.00	16.4	83.4	0.1	-3.83	1.16	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile

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