Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TD6	10464	2022-12-13	2019-11-07	4.76	5.03	—	4.8	0.010	1.11	0.0	0.07	16.37	0.01	1.777	55.96	0.35	22.8	76.8	0.4	-6.33	0.62	0.70	—	4.8	0.003	0.65	0.0	0.04	14.83	0.00	1.936	17.12	0.00	9.6	90.4	0.0	-0.93	1.45	0.59	0.68	—	15680	982	4	0	3	0	7766	logfile
✔	6oF4	20042	2022-12-12	2019-03-28	3.2	2.71	—	3.6	0.010	1.19	0.0	0.06	15.12	0.01	2.091	11.76	2.54	19.6	76.8	3.5	-4.99	0.79	0.82	1.96	3.6	0.007	0.87	0.0	0.05	16.56	0.01	2.126	8.36	0.93	11.0	88.9	0.1	0.03	1.66	0.80	0.83	1.85	10998	1422	4	0	0	0	0	logfile
✔	4UY8	2773	2022-12-16	2014-08-29	3.8	4.07	—	4.1	0.010	1.50	8.0	0.07	15.49	0.01	0.879	12.40	11.16	16.3	76.9	6.8	-5.04	0.53	0.64	0.36	4.0	0.004	0.65	0.0	0.03	17.10	0.01	1.501	60.50	1.68	16.8	81.0	2.1	-3.46	1.60	0.58	0.80	1.11	92995	3468	47	3049	144	439	8	logfile
✔	5ND4	3622	2022-12-12	2017-03-07	4.4	5.55	—	5.5	0.010	1.69	11.0	0.20	21.69	0.01	1.678	26.84	15.57	14.5	77.1	8.3	-4.90	0.37	0.37	—	5.4	0.004	1.10	0.0	0.05	15.48	0.01	1.579	32.86	0.20	8.1	91.4	0.5	-1.90	1.91	0.48	0.71	—	9435	1175	6	1	6	0	0	logfile
✔	3J7Z	6057	2022-12-16	2014-08-27	3.9	3.80	—	3.9	0.009	1.42	5.0	0.10	15.56	0.01	1.426	11.71	10.91	16.3	77.2	6.5	-5.00	0.75	0.70	0.71	3.8	0.006	0.88	0.0	0.05	15.92	0.01	1.948	18.48	1.83	14.0	83.9	2.1	-3.23	1.86	0.79	0.80	0.90	90700	3453	36	2975	1	0	0	logfile
✔	6HV8	0287	2022-12-12	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	9.02	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.003	0.86	0.0	0.05	12.68	0.00	2.153	15.07	0.00	13.6	86.4	0.0	-2.57	1.05	0.74	0.71	—	9206	1184	2	0	2	0	0	logfile
✔	7CN9	30419	2022-12-15	2020-07-30	4.7	4.78	—	4.7	0.010	1.16	0.0	0.07	15.31	0.01	1.927	47.56	2.39	21.4	77.5	1.1	-5.89	0.53	0.74	—	4.7	0.003	0.79	0.0	0.05	13.34	0.00	2.100	16.99	0.20	10.5	89.3	0.1	-2.86	1.40	0.50	0.70	—	24052	3058	19	0	56	0	0	logfile
✔	6i0Y	0322	2022-12-16	2018-10-26	3.2	4.80	—	4.7	0.010	1.49	8.0	0.07	15.55	0.01	0.682	13.08	11.41	16.0	77.5	6.5	-5.00	0.59	0.58	0.26	4.7	0.007	0.90	0.0	0.04	16.25	0.01	0.951	24.84	1.25	14.6	83.4	2.0	-2.93	1.61	0.61	0.73	0.89	93619	3551	48	3049	144	439	0	logfile
✔	5o3L	3741	2022-12-12	2017-05-24	3.4	3.71	3.34	3.7	0.012	1.03	0.0	0.06	8.97	0.01	2.111	10.30	0.00	22.4	77.6	0.0	-6.67	0.60	0.69	2.44	3.6	0.004	0.78	0.0	0.05	15.73	0.01	1.941	16.55	0.31	12.7	87.3	0.0	-5.25	2.67	0.56	0.74	2.54	11360	730	10	0	0	0	5790	logfile
✔	7BW8	30230	2022-12-11	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	49.81	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.003	0.93	0.0	0.05	18.25	0.01	2.183	21.74	1.03	11.8	88.2	0.0	-3.21	2.05	0.68	0.63	0.49	6021	737	3	0	0	0	0	logfile
✔	6WHR	21673	2022-12-15	2020-04-08	3.99	4.51	—	4.3	0.015	1.22	0.0	0.07	15.42	0.01	1.968	30.82	2.94	21.2	78.0	0.8	-5.90	0.69	0.73	1.29	4.3	0.003	0.73	0.0	0.04	15.83	0.00	2.179	10.99	0.30	8.0	91.9	0.1	-1.51	0.56	0.77	0.82	0.76	23370	3166	10	0	14	0	0	logfile
✔	7SWN	25476	2022-12-11	2021-11-20	4.3	3.77	—	3.5	0.007	1.06	0.0	0.06	14.58	0.01	2.203	41.73	0.00	21.9	78.1	0.0	-4.82	0.57	0.68	—	3.5	0.004	0.87	0.0	0.05	13.76	0.01	2.185	26.97	0.00	14.2	85.8	0.0	-3.79	2.09	0.58	0.69	—	3283	422	3	0	0	0	0	logfile
✔	7N88	24233	2022-12-12	2021-06-14	3.7	3.90	—	3.9	0.008	1.04	0.0	0.05	15.40	0.01	1.680	28.96	0.81	21.4	78.3	0.2	-6.39	0.74	0.73	1.71	3.9	0.003	0.82	0.0	0.05	16.57	0.00	1.897	18.11	0.61	13.5	86.5	0.0	-3.67	1.21	0.72	0.70	1.45	9402	1220	2	0	4	0	0	logfile
✔	6H3i	0133	2022-12-14	2018-07-18	3.5	3.59	—	3.5	0.009	0.92	0.0	0.05	10.08	0.01	2.012	39.59	0.40	21.4	78.4	0.2	-5.64	0.78	0.86	4.47	3.5	0.007	0.71	0.0	0.04	13.40	0.00	1.972	52.60	0.27	22.1	77.8	0.1	-4.48	2.52	0.78	0.87	3.41	20599	2597	3	0	0	0	53	logfile
✔	7AST	11904	2022-12-19	2020-10-28	4.0	3.84	—	3.5	0.016	1.10	1.0	0.06	15.36	0.01	1.913	32.75	0.00	20.8	78.6	0.6	-4.78	0.61	0.46	—	3.5	0.016	0.97	0.0	0.05	17.45	0.01	2.108	26.40	0.37	16.4	83.3	0.3	-3.59	1.41	0.64	0.49	—	34518	4365	17	0	36	0	0	logfile
✔	7N64	24193	2022-12-11	2021-06-07	4.2	3.94	—	3.9	0.009	1.04	0.0	0.06	15.15	0.01	2.157	36.93	1.78	20.8	78.9	0.3	-3.80	0.65	0.71	—	3.9	0.004	0.78	0.0	0.05	13.76	0.00	2.046	18.15	0.00	12.4	87.6	0.0	-2.61	1.01	0.63	0.68	—	7189	906	7	0	7	0	0	logfile
✔	6SHS	10204	2022-12-11	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.003	0.65	0.0	0.05	12.94	0.00	2.245	6.84	0.00	16.4	83.6	0.0	-5.45	1.71	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✔	7V1N	31628	2022-12-14	2021-08-05	3.2	3.33	—	3.2	0.013	1.21	4.0	0.07	19.76	0.01	1.973	28.55	16.75	20.1	78.9	1.0	-5.88	0.65	0.73	1.68	3.2	0.003	0.73	0.0	0.05	18.19	0.00	2.050	13.49	0.43	11.3	88.5	0.2	-3.09	0.63	0.65	0.75	1.81	19156	2403	2	0	0	0	0	logfile
✔	5Li4	4052	2022-12-14	2016-07-14	4.2	5.13	—	4.0	0.053	3.06	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.0	0.004	1.00	0.0	0.05	13.63	0.01	2.096	28.96	0.00	14.1	84.7	1.2	-3.67	4.17	0.34	0.57	—	20070	2562	6	0	0	0	0	logfile
✔	5W1R	8751	2022-12-15	2017-06-04	4.4	4.48	—	4.4	0.006	1.21	2.0	0.06	14.97	0.01	1.238	42.76	1.30	15.6	79.1	5.4	-5.31	0.66	0.69	—	4.4	0.003	0.89	0.0	0.04	13.29	0.01	2.079	14.33	0.00	10.0	89.2	0.7	-1.81	1.16	0.66	0.69	—	25559	3563	1	0	0	0	0	logfile

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