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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5o3L | 3741 | 2022-05-13 | 2017-05-24 | 3.4 | 3.71 | 3.34 | 3.7 | 0.012 | 1.03 | 0.0 | 0.06 | 8.97 | 0.01 | 2.111 | 10.30 | 0.00 | 22.4 | 77.6 | 0.0 | -6.67 | 0.60 | 0.69 | 2.44 | 3.6 | 0.004 | 0.78 | 0.0 | 0.05 | 15.73 | 0.01 | 1.941 | 16.55 | 0.31 | 12.7 | 87.3 | 0.0 | -5.25 | 2.67 | 0.53 | 0.70 | 2.54 | 11360 | 730 | 10 | 0 | 0 | 0 | 5790 | logfile |
✔ | 7BW8 | 30230 | 2022-05-12 | 2020-04-14 | 3.8 | 4.16 | 3.79 | 4.4 | 0.009 | 1.38 | 0.0 | 0.07 | 17.39 | 0.01 | 1.974 | 49.81 | 0.00 | 22.3 | 77.7 | 0.0 | -5.01 | 0.70 | 0.66 | 0.41 | 4.4 | 0.003 | 0.93 | 0.0 | 0.05 | 18.20 | 0.01 | 2.199 | 20.73 | 0.74 | 12.0 | 88.0 | 0.0 | -3.10 | 1.56 | 0.68 | 0.63 | 0.49 | 6021 | 737 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WHR | 21673 | 2022-05-15 | 2020-04-08 | 3.99 | 4.51 | — | 4.3 | 0.015 | 1.22 | 0.0 | 0.07 | 15.42 | 0.01 | 1.968 | 30.82 | 2.94 | 21.2 | 78.0 | 0.8 | -5.90 | 0.69 | 0.73 | 1.29 | 4.3 | 0.004 | 0.75 | 0.0 | 0.05 | 15.89 | 0.00 | 2.168 | 12.07 | 0.43 | 8.8 | 91.0 | 0.2 | -1.64 | 0.54 | 0.77 | 0.82 | 0.79 | 23370 | 3166 | 10 | 0 | 14 | 0 | 0 | logfile |
✔ | 7SWN | 25476 | 2022-05-12 | 2021-11-20 | 4.3 | 3.77 | — | 3.5 | 0.007 | 1.06 | 0.0 | 0.06 | 14.58 | 0.01 | 2.203 | 41.73 | 0.00 | 21.9 | 78.1 | 0.0 | -4.82 | 0.57 | 0.68 | — | 3.5 | 0.004 | 0.84 | 0.0 | 0.05 | 13.67 | 0.01 | 2.179 | 23.82 | 0.00 | 11.8 | 88.2 | 0.0 | -3.57 | 2.08 | 0.57 | 0.67 | — | 3283 | 422 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 4V91 | 2599 | 2022-05-15 | 2014-03-21 | 3.7 | 3.84 | — | 3.8 | 0.133 | 4.77 | 525.0 | 0.43 | 20.66 | 0.07 | 0.695 | 20.15 | 12.79 | 14.1 | 78.2 | 7.8 | -5.39 | 0.33 | 0.36 | 0.15 | 3.8 | 0.029 | 1.21 | 1.0 | 0.04 | 17.29 | 0.01 | 1.610 | 16.06 | 0.15 | 7.8 | 91.4 | 0.8 | -2.72 | 1.86 | 0.61 | 0.79 | 1.30 | 125665 | 6450 | 45 | 3482 | 0 | 0 | 0 | logfile |
✔ | 7N88 | 24233 | 2022-05-13 | 2021-06-14 | 3.7 | 3.90 | — | 3.9 | 0.008 | 1.04 | 0.0 | 0.05 | 15.40 | 0.01 | 1.680 | 28.96 | 0.81 | 21.4 | 78.3 | 0.2 | -6.39 | 0.74 | 0.73 | 1.71 | 3.9 | 0.005 | 0.87 | 1.0 | 0.04 | 16.65 | 0.01 | 1.934 | 16.43 | 0.41 | 13.2 | 86.8 | 0.1 | -3.51 | 0.56 | 0.72 | 0.70 | 1.39 | 9402 | 1220 | 2 | 0 | 4 | 0 | 0 | logfile |
✔ | 6H3i | 0133 | 2022-05-14 | 2018-07-18 | 3.5 | 3.59 | — | 3.5 | 0.009 | 0.92 | 0.0 | 0.05 | 10.08 | 0.01 | 2.012 | 39.59 | 0.40 | 21.4 | 78.4 | 0.2 | -5.64 | 0.78 | 0.86 | 4.47 | 3.5 | 0.010 | 0.93 | 1.0 | 0.04 | 13.26 | 0.00 | 2.010 | 52.82 | 0.00 | 21.1 | 78.8 | 0.1 | -4.42 | 2.52 | 0.78 | 0.87 | 3.45 | 20599 | 2597 | 3 | 0 | 0 | 0 | 53 | logfile |
✔ | 7AST | 11904 | 2022-05-16 | 2020-10-28 | 4.0 | 3.84 | — | 3.5 | 0.016 | 1.10 | 1.0 | 0.06 | 15.36 | 0.01 | 1.913 | 32.75 | 0.00 | 20.8 | 78.6 | 0.6 | -4.78 | 0.61 | 0.46 | — | 3.6 | 0.018 | 1.20 | 1.0 | 0.05 | 17.51 | 0.01 | 1.897 | 36.36 | 0.05 | 18.8 | 80.8 | 0.5 | -4.06 | 2.28 | 0.64 | 0.50 | — | 34518 | 4365 | 17 | 0 | 36 | 0 | 0 | logfile |
✘ | 7SHE | 25125 | 2022-05-13 | 2021-10-08 | 3.4 | 2.32 | — | 3.3 | 0.057 | 1.69 | 0.0 | 0.34 | 15.66 | 0.01 | 1.188 | 28.97 | 0.11 | 18.8 | 78.7 | 2.5 | -5.87 | 0.72 | 0.73 | 1.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9130 | 1084 | 4 | 0 | 24 | 0 | 0 | logfile |
✔ | 6SHS | 10204 | 2022-05-12 | 2019-08-08 | 4.4 | 4.36 | — | 4.3 | 0.009 | 1.02 | 0.0 | 0.06 | 12.04 | 0.00 | 2.341 | 25.68 | 0.00 | 21.1 | 78.9 | 0.0 | -5.87 | 0.69 | 0.62 | — | 4.4 | 0.003 | 0.65 | 0.0 | 0.05 | 12.94 | 0.00 | 2.245 | 6.84 | 0.00 | 16.4 | 83.6 | 0.0 | -5.45 | 1.71 | 0.73 | 0.71 | — | 7068 | 480 | 12 | 0 | 0 | 0 | 3408 | logfile |
✔ | 7N64 | 24193 | 2022-05-12 | 2021-06-07 | 4.2 | 3.94 | — | 3.9 | 0.009 | 1.04 | 0.0 | 0.06 | 15.15 | 0.01 | 2.157 | 36.93 | 1.78 | 20.8 | 78.9 | 0.3 | -3.80 | 0.65 | 0.71 | — | 3.9 | 0.004 | 0.82 | 0.0 | 0.05 | 13.98 | 0.01 | 2.012 | 20.56 | 0.00 | 12.3 | 87.6 | 0.1 | -2.80 | 0.99 | 0.63 | 0.69 | — | 7189 | 906 | 7 | 0 | 7 | 0 | 0 | logfile |
✔ | 7V1N | 31628 | 2022-05-14 | 2021-08-05 | 3.2 | 3.33 | — | 3.2 | 0.013 | 1.21 | 4.0 | 0.07 | 19.76 | 0.01 | 1.973 | 28.55 | 16.75 | 20.1 | 78.9 | 1.0 | -5.88 | 0.65 | 0.73 | 1.68 | 3.3 | 0.009 | 1.00 | 0.0 | 0.05 | 18.24 | 0.01 | 1.844 | 16.83 | 0.24 | 12.5 | 87.3 | 0.2 | -3.56 | 0.59 | 0.64 | 0.73 | 1.81 | 19156 | 2403 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LV0 | 23528 | 2022-05-20 | 2021-02-23 | 3.2 | 3.59 | — | 3.2 | 0.012 | 1.25 | 0.0 | 0.10 | 15.70 | 0.02 | 1.414 | 29.37 | 3.83 | 19.0 | 79.0 | 2.0 | -4.79 | 0.81 | 0.82 | 1.87 | 3.2 | 0.006 | 0.78 | 0.0 | 0.04 | 16.63 | 0.01 | 2.037 | 18.98 | 1.21 | 14.8 | 85.1 | 0.1 | -2.90 | 0.48 | 0.81 | 0.84 | 1.30 | 147330 | 5851 | 60 | 4734 | 0 | 0 | 0 | logfile |
✔ | 5ZLU | 6934 | 2022-05-22 | 2018-03-29 | 3.6 | 3.66 | — | 3.6 | 0.008 | 1.26 | 2.0 | 0.07 | 18.68 | 0.01 | 0.401 | 13.59 | 2.52 | 18.9 | 79.1 | 1.9 | -5.90 | 0.78 | 0.77 | 1.74 | 3.6 | 0.007 | 1.01 | 2.0 | 0.05 | 18.91 | 0.01 | 1.656 | 14.56 | 0.23 | 20.5 | 78.7 | 0.9 | -4.73 | 1.21 | 0.78 | 0.79 | 0.91 | 150313 | 6529 | 60 | 4596 | 4 | 0 | 0 | logfile |
✔ | 5Li4 | 4052 | 2022-05-14 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.06 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.15 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.4 | 0.004 | 1.02 | 0.0 | 0.05 | 13.71 | 0.01 | 2.118 | 26.70 | 0.00 | 14.0 | 85.0 | 1.0 | -3.83 | 4.19 | 0.34 | 0.57 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5W1R | 8751 | 2022-05-15 | 2017-06-04 | 4.4 | 4.48 | — | 4.4 | 0.006 | 1.21 | 2.0 | 0.06 | 14.97 | 0.01 | 1.238 | 42.76 | 1.30 | 15.6 | 79.1 | 5.4 | -5.31 | 0.66 | 0.69 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.04 | 13.31 | 0.01 | 2.078 | 13.63 | 0.00 | 10.0 | 89.2 | 0.7 | -1.80 | 1.16 | 0.66 | 0.68 | — | 25559 | 3563 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ASE | 11893 | 2022-05-17 | 2020-10-27 | 3.33 | 3.38 | — | 3.3 | 0.019 | 2.20 | 149.0 | 0.14 | 16.87 | 0.02 | 0.502 | 9.41 | 3.37 | 14.2 | 79.1 | 6.8 | -4.38 | 0.46 | 0.57 | 1.25 | 3.3 | 0.007 | 1.03 | 6.0 | 0.04 | 17.13 | 0.01 | 1.577 | 15.74 | 0.22 | 12.3 | 86.4 | 1.3 | -2.10 | 1.45 | 0.54 | 0.71 | 1.31 | 136847 | 11195 | 54 | 2225 | 3 | 0 | 0 | logfile |
✔ | 5Y81 | 6816 | 2022-05-16 | 2017-08-18 | 4.7 | 4.77 | — | 4.6 | 0.012 | 1.24 | 3.0 | 0.06 | 11.53 | 0.01 | 1.581 | 41.26 | 14.19 | 15.5 | 79.2 | 5.3 | -5.73 | 0.66 | 0.69 | — | 4.6 | 0.005 | 0.88 | 0.0 | 0.04 | 9.92 | 0.00 | 2.027 | 11.21 | 0.10 | 10.0 | 89.0 | 1.0 | 0.55 | 0.83 | 0.70 | 0.73 | — | 25723 | 4095 | 8 | 0 | 360 | 0 | 0 | logfile |
✔ | 7o7S | 12755 | 2022-05-17 | 2021-04-13 | 4.3 | 4.69 | — | 4.4 | 0.009 | 1.27 | 7.0 | 0.07 | 16.68 | 0.02 | 1.857 | 21.70 | 1.09 | 20.1 | 79.2 | 0.7 | -5.96 | 0.75 | 0.58 | — | 4.4 | 0.004 | 0.89 | 0.0 | 0.05 | 14.82 | 0.01 | 2.100 | 23.91 | 0.02 | 13.2 | 86.7 | 0.1 | -3.84 | 2.51 | 0.76 | 0.60 | — | 41466 | 5236 | 17 | 0 | 44 | 0 | 0 | logfile |
✔ | 6JXA | 9892 | 2022-05-13 | 2019-04-23 | 4.3 | 4.65 | — | 4.2 | 0.017 | 1.81 | 3.0 | 0.10 | 9.08 | 0.01 | 1.926 | 29.80 | 2.04 | 12.2 | 79.3 | 8.5 | -2.72 | 0.49 | 0.42 | — | 4.2 | 0.003 | 0.90 | 0.0 | 0.04 | 11.46 | 0.01 | 2.176 | 16.41 | 0.00 | 15.9 | 81.4 | 2.7 | -1.63 | 0.95 | 0.65 | 0.61 | — | 14100 | 2244 | 1 | 0 | 0 | 0 | 0 | logfile |