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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6TD6 | 10464 | 2022-12-13 | 2019-11-07 | 4.76 | 5.03 | — | 4.8 | 0.010 | 1.11 | 0.0 | 0.07 | 16.37 | 0.01 | 1.777 | 55.96 | 0.35 | 22.8 | 76.8 | 0.4 | -6.33 | 0.62 | 0.70 | — | 4.8 | 0.003 | 0.65 | 0.0 | 0.04 | 14.83 | 0.00 | 1.936 | 17.12 | 0.00 | 9.6 | 90.4 | 0.0 | -0.93 | 1.45 | 0.59 | 0.68 | — | 15680 | 982 | 4 | 0 | 3 | 0 | 7766 | logfile |
✔ | 6oF4 | 20042 | 2022-12-12 | 2019-03-28 | 3.2 | 2.71 | — | 3.6 | 0.010 | 1.19 | 0.0 | 0.06 | 15.12 | 0.01 | 2.091 | 11.76 | 2.54 | 19.6 | 76.8 | 3.5 | -4.99 | 0.79 | 0.82 | 1.96 | 3.6 | 0.007 | 0.87 | 0.0 | 0.05 | 16.56 | 0.01 | 2.126 | 8.36 | 0.93 | 11.0 | 88.9 | 0.1 | 0.03 | 1.66 | 0.80 | 0.83 | 1.85 | 10998 | 1422 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 4UY8 | 2773 | 2022-12-16 | 2014-08-29 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.50 | 8.0 | 0.07 | 15.49 | 0.01 | 0.879 | 12.40 | 11.16 | 16.3 | 76.9 | 6.8 | -5.04 | 0.53 | 0.64 | 0.36 | 4.0 | 0.004 | 0.65 | 0.0 | 0.03 | 17.10 | 0.01 | 1.501 | 60.50 | 1.68 | 16.8 | 81.0 | 2.1 | -3.46 | 1.60 | 0.58 | 0.80 | 1.11 | 92995 | 3468 | 47 | 3049 | 144 | 439 | 8 | logfile |
✔ | 5ND4 | 3622 | 2022-12-12 | 2017-03-07 | 4.4 | 5.55 | — | 5.5 | 0.010 | 1.69 | 11.0 | 0.20 | 21.69 | 0.01 | 1.678 | 26.84 | 15.57 | 14.5 | 77.1 | 8.3 | -4.90 | 0.37 | 0.37 | — | 5.4 | 0.004 | 1.10 | 0.0 | 0.05 | 15.48 | 0.01 | 1.579 | 32.86 | 0.20 | 8.1 | 91.4 | 0.5 | -1.90 | 1.91 | 0.48 | 0.71 | — | 9435 | 1175 | 6 | 1 | 6 | 0 | 0 | logfile |
✔ | 3J7Z | 6057 | 2022-12-16 | 2014-08-27 | 3.9 | 3.80 | — | 3.9 | 0.009 | 1.42 | 5.0 | 0.10 | 15.56 | 0.01 | 1.426 | 11.71 | 10.91 | 16.3 | 77.2 | 6.5 | -5.00 | 0.75 | 0.70 | 0.71 | 3.8 | 0.006 | 0.88 | 0.0 | 0.05 | 15.92 | 0.01 | 1.948 | 18.48 | 1.83 | 14.0 | 83.9 | 2.1 | -3.23 | 1.86 | 0.79 | 0.80 | 0.90 | 90700 | 3453 | 36 | 2975 | 1 | 0 | 0 | logfile |
✔ | 6HV8 | 0287 | 2022-12-12 | 2018-10-10 | 4.4 | 4.51 | — | 4.4 | 0.009 | 1.62 | 2.0 | 0.08 | 10.20 | 0.01 | 1.472 | 9.02 | 1.31 | 22.1 | 77.3 | 0.6 | -4.84 | 0.74 | 0.72 | — | 4.4 | 0.003 | 0.86 | 0.0 | 0.05 | 12.68 | 0.00 | 2.153 | 15.07 | 0.00 | 13.6 | 86.4 | 0.0 | -2.57 | 1.05 | 0.74 | 0.71 | — | 9206 | 1184 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 7CN9 | 30419 | 2022-12-15 | 2020-07-30 | 4.7 | 4.78 | — | 4.7 | 0.010 | 1.16 | 0.0 | 0.07 | 15.31 | 0.01 | 1.927 | 47.56 | 2.39 | 21.4 | 77.5 | 1.1 | -5.89 | 0.53 | 0.74 | — | 4.7 | 0.003 | 0.79 | 0.0 | 0.05 | 13.34 | 0.00 | 2.100 | 16.99 | 0.20 | 10.5 | 89.3 | 0.1 | -2.86 | 1.40 | 0.50 | 0.70 | — | 24052 | 3058 | 19 | 0 | 56 | 0 | 0 | logfile |
✔ | 6i0Y | 0322 | 2022-12-16 | 2018-10-26 | 3.2 | 4.80 | — | 4.7 | 0.010 | 1.49 | 8.0 | 0.07 | 15.55 | 0.01 | 0.682 | 13.08 | 11.41 | 16.0 | 77.5 | 6.5 | -5.00 | 0.59 | 0.58 | 0.26 | 4.7 | 0.007 | 0.90 | 0.0 | 0.04 | 16.25 | 0.01 | 0.951 | 24.84 | 1.25 | 14.6 | 83.4 | 2.0 | -2.93 | 1.61 | 0.61 | 0.73 | 0.89 | 93619 | 3551 | 48 | 3049 | 144 | 439 | 0 | logfile |
✔ | 5o3L | 3741 | 2022-12-12 | 2017-05-24 | 3.4 | 3.71 | 3.34 | 3.7 | 0.012 | 1.03 | 0.0 | 0.06 | 8.97 | 0.01 | 2.111 | 10.30 | 0.00 | 22.4 | 77.6 | 0.0 | -6.67 | 0.60 | 0.69 | 2.44 | 3.6 | 0.004 | 0.78 | 0.0 | 0.05 | 15.73 | 0.01 | 1.941 | 16.55 | 0.31 | 12.7 | 87.3 | 0.0 | -5.25 | 2.67 | 0.56 | 0.74 | 2.54 | 11360 | 730 | 10 | 0 | 0 | 0 | 5790 | logfile |
✔ | 7BW8 | 30230 | 2022-12-11 | 2020-04-14 | 3.8 | 4.16 | 3.79 | 4.4 | 0.009 | 1.38 | 0.0 | 0.07 | 17.39 | 0.01 | 1.974 | 49.81 | 0.00 | 22.3 | 77.7 | 0.0 | -5.01 | 0.70 | 0.66 | 0.41 | 4.4 | 0.003 | 0.93 | 0.0 | 0.05 | 18.25 | 0.01 | 2.183 | 21.74 | 1.03 | 11.8 | 88.2 | 0.0 | -3.21 | 2.05 | 0.68 | 0.63 | 0.49 | 6021 | 737 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WHR | 21673 | 2022-12-15 | 2020-04-08 | 3.99 | 4.51 | — | 4.3 | 0.015 | 1.22 | 0.0 | 0.07 | 15.42 | 0.01 | 1.968 | 30.82 | 2.94 | 21.2 | 78.0 | 0.8 | -5.90 | 0.69 | 0.73 | 1.29 | 4.3 | 0.003 | 0.73 | 0.0 | 0.04 | 15.83 | 0.00 | 2.179 | 10.99 | 0.30 | 8.0 | 91.9 | 0.1 | -1.51 | 0.56 | 0.77 | 0.82 | 0.76 | 23370 | 3166 | 10 | 0 | 14 | 0 | 0 | logfile |
✔ | 7SWN | 25476 | 2022-12-11 | 2021-11-20 | 4.3 | 3.77 | — | 3.5 | 0.007 | 1.06 | 0.0 | 0.06 | 14.58 | 0.01 | 2.203 | 41.73 | 0.00 | 21.9 | 78.1 | 0.0 | -4.82 | 0.57 | 0.68 | — | 3.5 | 0.004 | 0.87 | 0.0 | 0.05 | 13.76 | 0.01 | 2.185 | 26.97 | 0.00 | 14.2 | 85.8 | 0.0 | -3.79 | 2.09 | 0.58 | 0.69 | — | 3283 | 422 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N88 | 24233 | 2022-12-12 | 2021-06-14 | 3.7 | 3.90 | — | 3.9 | 0.008 | 1.04 | 0.0 | 0.05 | 15.40 | 0.01 | 1.680 | 28.96 | 0.81 | 21.4 | 78.3 | 0.2 | -6.39 | 0.74 | 0.73 | 1.71 | 3.9 | 0.003 | 0.82 | 0.0 | 0.05 | 16.57 | 0.00 | 1.897 | 18.11 | 0.61 | 13.5 | 86.5 | 0.0 | -3.67 | 1.21 | 0.72 | 0.70 | 1.45 | 9402 | 1220 | 2 | 0 | 4 | 0 | 0 | logfile |
✔ | 6H3i | 0133 | 2022-12-14 | 2018-07-18 | 3.5 | 3.59 | — | 3.5 | 0.009 | 0.92 | 0.0 | 0.05 | 10.08 | 0.01 | 2.012 | 39.59 | 0.40 | 21.4 | 78.4 | 0.2 | -5.64 | 0.78 | 0.86 | 4.47 | 3.5 | 0.007 | 0.71 | 0.0 | 0.04 | 13.40 | 0.00 | 1.972 | 52.60 | 0.27 | 22.1 | 77.8 | 0.1 | -4.48 | 2.52 | 0.78 | 0.87 | 3.41 | 20599 | 2597 | 3 | 0 | 0 | 0 | 53 | logfile |
✔ | 7AST | 11904 | 2022-12-19 | 2020-10-28 | 4.0 | 3.84 | — | 3.5 | 0.016 | 1.10 | 1.0 | 0.06 | 15.36 | 0.01 | 1.913 | 32.75 | 0.00 | 20.8 | 78.6 | 0.6 | -4.78 | 0.61 | 0.46 | — | 3.5 | 0.016 | 0.97 | 0.0 | 0.05 | 17.45 | 0.01 | 2.108 | 26.40 | 0.37 | 16.4 | 83.3 | 0.3 | -3.59 | 1.41 | 0.64 | 0.49 | — | 34518 | 4365 | 17 | 0 | 36 | 0 | 0 | logfile |
✔ | 7N64 | 24193 | 2022-12-11 | 2021-06-07 | 4.2 | 3.94 | — | 3.9 | 0.009 | 1.04 | 0.0 | 0.06 | 15.15 | 0.01 | 2.157 | 36.93 | 1.78 | 20.8 | 78.9 | 0.3 | -3.80 | 0.65 | 0.71 | — | 3.9 | 0.004 | 0.78 | 0.0 | 0.05 | 13.76 | 0.00 | 2.046 | 18.15 | 0.00 | 12.4 | 87.6 | 0.0 | -2.61 | 1.01 | 0.63 | 0.68 | — | 7189 | 906 | 7 | 0 | 7 | 0 | 0 | logfile |
✔ | 6SHS | 10204 | 2022-12-11 | 2019-08-08 | 4.4 | 4.36 | — | 4.3 | 0.009 | 1.02 | 0.0 | 0.06 | 12.04 | 0.00 | 2.341 | 25.68 | 0.00 | 21.1 | 78.9 | 0.0 | -5.87 | 0.69 | 0.62 | — | 4.4 | 0.003 | 0.65 | 0.0 | 0.05 | 12.94 | 0.00 | 2.245 | 6.84 | 0.00 | 16.4 | 83.6 | 0.0 | -5.45 | 1.71 | 0.73 | 0.71 | — | 7068 | 480 | 12 | 0 | 0 | 0 | 3408 | logfile |
✔ | 7V1N | 31628 | 2022-12-14 | 2021-08-05 | 3.2 | 3.33 | — | 3.2 | 0.013 | 1.21 | 4.0 | 0.07 | 19.76 | 0.01 | 1.973 | 28.55 | 16.75 | 20.1 | 78.9 | 1.0 | -5.88 | 0.65 | 0.73 | 1.68 | 3.2 | 0.003 | 0.73 | 0.0 | 0.05 | 18.19 | 0.00 | 2.050 | 13.49 | 0.43 | 11.3 | 88.5 | 0.2 | -3.09 | 0.63 | 0.65 | 0.75 | 1.81 | 19156 | 2403 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Li4 | 4052 | 2022-12-14 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.06 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.07 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.0 | 0.004 | 1.00 | 0.0 | 0.05 | 13.63 | 0.01 | 2.096 | 28.96 | 0.00 | 14.1 | 84.7 | 1.2 | -3.67 | 4.17 | 0.34 | 0.57 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5W1R | 8751 | 2022-12-15 | 2017-06-04 | 4.4 | 4.48 | — | 4.4 | 0.006 | 1.21 | 2.0 | 0.06 | 14.97 | 0.01 | 1.238 | 42.76 | 1.30 | 15.6 | 79.1 | 5.4 | -5.31 | 0.66 | 0.69 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.04 | 13.29 | 0.01 | 2.079 | 14.33 | 0.00 | 10.0 | 89.2 | 0.7 | -1.81 | 1.16 | 0.66 | 0.69 | — | 25559 | 3563 | 1 | 0 | 0 | 0 | 0 | logfile |