Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5o3L	3741	2022-07-03	2017-05-24	3.4	3.71	3.34	3.7	0.012	1.03	0.0	0.06	8.97	0.01	2.111	10.30	0.00	22.4	77.6	0.0	-6.67	0.60	0.69	2.44	3.6	0.004	0.78	0.0	0.05	15.73	0.01	1.941	16.55	0.31	12.7	87.3	0.0	-5.25	2.67	0.53	0.70	2.54	11360	730	10	0	0	0	5790	logfile
✔	7BW8	30230	2022-07-03	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	49.81	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.003	0.93	0.0	0.05	18.20	0.01	2.199	20.73	0.74	12.0	88.0	0.0	-3.10	1.56	0.68	0.63	0.49	6021	737	3	0	0	0	0	logfile
✔	6WHR	21673	2022-07-05	2020-04-08	3.99	4.51	—	4.3	0.015	1.22	0.0	0.07	15.42	0.01	1.968	30.82	2.94	21.2	78.0	0.8	-5.90	0.69	0.73	1.29	4.3	0.004	0.75	0.0	0.05	15.89	0.00	2.168	12.07	0.43	8.8	91.0	0.2	-1.64	0.54	0.77	0.82	0.79	23370	3166	10	0	14	0	0	logfile
✔	7SWN	25476	2022-07-03	2021-11-20	4.3	3.77	—	3.5	0.007	1.06	0.0	0.06	14.58	0.01	2.203	41.73	0.00	21.9	78.1	0.0	-4.82	0.57	0.68	—	3.5	0.004	0.84	0.0	0.05	13.67	0.01	2.179	23.82	0.00	11.8	88.2	0.0	-3.57	2.08	0.57	0.67	—	3283	422	3	0	0	0	0	logfile
✔	4V91	2599	2022-07-05	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	20.15	12.79	14.1	78.2	7.8	-5.39	0.33	0.36	0.15	3.8	0.037	1.45	1.0	0.04	17.34	0.02	1.816	16.56	0.20	8.3	90.9	0.7	-2.82	1.96	0.62	0.80	1.42	125665	6450	45	3482	0	0	0	logfile
✔	7N88	24233	2022-07-03	2021-06-14	3.7	3.90	—	3.9	0.008	1.04	0.0	0.05	15.40	0.01	1.680	28.96	0.81	21.4	78.3	0.2	-6.39	0.74	0.73	1.71	3.9	0.005	0.87	1.0	0.04	16.65	0.01	1.934	16.43	0.41	13.2	86.8	0.1	-3.51	0.56	0.72	0.70	1.39	9402	1220	2	0	4	0	0	logfile
✔	6H3i	0133	2022-07-04	2018-07-18	3.5	3.59	—	3.5	0.009	0.92	0.0	0.05	10.08	0.01	2.012	39.59	0.40	21.4	78.4	0.2	-5.64	0.78	0.86	4.47	3.5	0.010	0.93	1.0	0.04	13.26	0.00	2.010	52.82	0.00	21.1	78.8	0.1	-4.42	2.52	0.78	0.87	3.45	20599	2597	3	0	0	0	53	logfile
✔	7AST	11904	2022-07-06	2020-10-28	4.0	3.84	—	3.5	0.016	1.10	1.0	0.06	15.36	0.01	1.913	32.75	0.00	20.8	78.6	0.6	-4.78	0.61	0.46	—	3.6	0.018	1.20	1.0	0.05	17.51	0.01	1.897	36.36	0.05	18.8	80.8	0.5	-4.06	2.28	0.64	0.50	—	34518	4365	17	0	36	0	0	logfile
✘	7SHE	25125	2022-07-03	2021-10-08	3.4	2.32	—	3.3	0.057	1.69	0.0	0.34	15.66	0.01	1.188	28.97	0.11	18.8	78.7	2.5	-5.87	0.72	0.73	1.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9130	1084	4	0	24	0	0	logfile
✔	6SHS	10204	2022-07-03	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.003	0.65	0.0	0.05	12.94	0.00	2.245	6.84	0.00	16.4	83.6	0.0	-5.45	1.71	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✔	7V1N	31628	2022-07-04	2021-08-05	3.2	3.33	—	3.2	0.013	1.21	4.0	0.07	19.76	0.01	1.973	28.55	16.75	20.1	78.9	1.0	-5.88	0.65	0.73	1.68	3.3	0.009	1.00	0.0	0.05	18.24	0.01	1.844	16.83	0.24	12.5	87.3	0.2	-3.56	0.59	0.64	0.73	1.81	19156	2403	2	0	0	0	0	logfile
✔	7N64	24193	2022-07-03	2021-06-07	4.2	3.94	—	3.9	0.009	1.04	0.0	0.06	15.15	0.01	2.157	36.93	1.78	20.8	78.9	0.3	-3.80	0.65	0.71	—	3.9	0.004	0.82	0.0	0.05	13.98	0.01	2.012	20.56	0.00	12.3	87.6	0.1	-2.80	0.99	0.63	0.69	—	7189	906	7	0	7	0	0	logfile
✔	7LV0	23528	2022-07-08	2021-02-23	3.2	3.59	—	3.2	0.012	1.25	0.0	0.10	15.70	0.02	1.414	29.37	3.83	19.0	79.0	2.0	-4.79	0.81	0.82	1.87	3.2	0.005	0.76	0.0	0.04	16.60	0.01	2.037	18.36	0.86	14.0	85.9	0.1	-2.91	0.48	0.81	0.83	1.13	147330	5851	60	4734	0	0	0	logfile
✔	5W1R	8751	2022-07-05	2017-06-04	4.4	4.48	—	4.4	0.006	1.21	2.0	0.06	14.97	0.01	1.238	42.76	1.30	15.6	79.1	5.4	-5.31	0.66	0.69	—	4.4	0.003	0.89	0.0	0.04	13.31	0.01	2.078	13.63	0.00	10.0	89.2	0.7	-1.80	1.16	0.66	0.68	—	25559	3563	1	0	0	0	0	logfile
✔	5Li4	4052	2022-07-04	2016-07-14	4.2	5.13	—	4.0	0.053	3.06	114.0	0.34	14.44	0.02	0.111	93.15	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.02	0.0	0.05	13.71	0.01	2.118	26.70	0.00	14.0	85.0	1.0	-3.83	4.19	0.34	0.57	—	20070	2562	6	0	0	0	0	logfile
✘	5ZLU	6934	2022-07-10	2018-03-29	3.6	3.66	—	3.6	0.007	1.26	2.0	0.07	18.62	0.01	0.401	13.59	2.52	18.9	79.1	1.9	-5.90	0.78	0.77	1.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	150313	6529	60	4596	4	0	0	logfile
✔	7ASE	11893	2022-07-06	2020-10-27	3.33	3.38	—	3.3	0.019	2.20	149.0	0.14	16.87	0.02	0.502	9.41	3.37	14.2	79.1	6.8	-4.38	0.46	0.57	1.25	3.3	0.008	1.02	9.0	0.04	16.79	0.01	1.944	12.60	0.44	11.6	87.3	1.2	-1.66	1.44	0.53	0.70	1.33	136847	11195	54	2225	3	0	0	logfile
✔	7o7S	12755	2022-07-07	2021-04-13	4.3	4.69	—	4.4	0.009	1.27	7.0	0.07	16.68	0.02	1.857	21.70	1.09	20.1	79.2	0.7	-5.96	0.75	0.58	—	4.4	0.004	0.89	0.0	0.05	14.82	0.01	2.100	23.91	0.02	13.2	86.7	0.1	-3.84	2.51	0.76	0.60	—	41466	5236	17	0	44	0	0	logfile
✔	5Y81	6816	2022-07-06	2017-08-18	4.7	4.77	—	4.6	0.012	1.24	3.0	0.06	11.53	0.01	1.581	41.26	14.19	15.5	79.2	5.3	-5.73	0.66	0.69	—	4.6	0.005	0.88	0.0	0.04	9.92	0.00	2.027	11.21	0.10	10.0	89.0	1.0	0.55	0.83	0.70	0.73	—	25723	4095	8	0	360	0	0	logfile
✔	6JXA	9892	2022-07-04	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.80	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.003	0.90	0.0	0.04	11.46	0.01	2.176	16.41	0.00	15.9	81.4	2.7	-1.63	0.95	0.65	0.61	—	14100	2244	1	0	0	0	0	logfile

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