Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6L1U	0803	2021-12-02	2019-09-30	3.37	3.54	—	3.5	0.009	0.73	0.0	0.06	15.49	0.00	2.138	15.24	0.00	15.8	84.2	0.0	-6.06	0.47	0.83	2.58	3.4	0.007	0.77	0.0	0.05	16.68	0.00	2.152	13.15	1.08	17.3	82.7	0.0	-5.04	1.97	0.48	0.85	2.84	10515	1500	15	0	0	0	0	logfile
✔	6UKT	20812	2021-12-01	2019-10-05	3.87	4.71	—	4.3	0.007	1.02	0.0	0.06	16.90	0.01	2.247	10.29	0.46	15.8	84.2	0.0	-5.03	0.89	0.80	0.36	4.3	0.004	0.74	0.0	0.04	17.69	0.01	2.138	15.06	0.46	12.0	87.9	0.1	-2.44	0.56	0.90	0.84	0.57	8979	1204	6	0	0	0	0	logfile
✔	5LMU	4080	2021-12-01	2016-08-01	4.0	4.12	4.00	4.0	0.008	1.44	43.0	0.12	21.32	0.01	1.289	21.15	25.30	12.0	84.2	3.8	-2.57	0.73	0.79	—	4.0	0.008	0.89	1.0	0.04	17.65	0.01	1.707	26.90	0.61	7.0	92.4	0.6	-1.45	1.58	0.75	0.83	—	55195	2550	29	1612	82	0	0	logfile
✔	6UZ2	20950	2021-12-01	2019-11-14	4.2	4.39	—	4.3	0.009	1.13	0.0	0.05	13.78	0.01	2.197	30.96	2.00	15.5	84.3	0.2	-5.29	0.69	0.78	—	4.3	0.003	0.79	0.0	0.04	11.99	0.00	2.157	13.84	0.00	5.3	94.6	0.1	0.06	0.98	0.68	0.76	—	7392	1140	2	0	0	0	0	logfile
✔	5FN5	3240	2021-12-01	2015-11-10	4.3	4.62	—	4.3	0.012	1.85	28.0	0.11	18.82	0.01	2.074	13.59	14.00	11.4	84.3	4.3	-1.91	0.65	0.62	—	4.3	0.004	0.86	0.0	0.04	13.51	0.01	2.157	20.70	0.00	9.4	89.9	0.7	-0.92	1.05	0.70	0.79	—	9645	1227	4	0	0	0	0	logfile
✔	6XTB	10618	2021-12-01	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.004	1.06	0.0	0.05	7.90	0.00	2.205	9.62	0.00	22.1	77.9	0.0	-5.53	2.43	0.34	0.64	—	1161	235	1	0	0	0	0	logfile
✔	3JC2	3245	2021-12-01	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.017	1.85	1.0	0.04	17.47	0.01	2.061	19.15	0.00	7.9	91.3	0.9	-1.89	2.29	0.24	0.53	1.41	3911	482	4	0	32	0	0	logfile
✔	6CU7	7618	2021-12-01	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.3	0.004	0.67	0.0	0.05	14.08	0.00	2.215	16.55	0.71	13.1	86.9	0.0	-4.59	1.76	0.39	0.72	1.68	4140	600	10	0	0	0	0	logfile
✔	7BZY	30263	2021-12-01	2020-04-29	3.7	5.07	3.67	2.9	0.005	1.03	0.0	0.05	7.60	0.00	2.175	11.89	0.00	15.0	84.6	0.3	-5.26	0.62	0.47	—	3.4	0.003	0.80	0.0	0.05	5.52	0.00	2.116	12.77	0.00	14.4	85.6	0.0	-2.69	1.26	0.85	0.74	—	6169	1260	3	0	0	0	0	logfile
✔	5FN4	3239	2021-12-01	2015-11-10	4.0	4.24	—	4.2	0.010	1.71	17.0	0.10	18.07	0.01	2.131	10.17	10.51	12.0	84.8	3.2	-1.44	0.61	0.55	—	4.1	0.004	0.96	0.0	0.05	17.15	0.01	2.115	22.07	0.48	8.5	90.8	0.7	-0.61	1.72	0.69	0.79	—	9776	1250	5	0	0	0	0	logfile
✔	5LMT	4079	2021-12-01	2016-08-01	4.15	4.33	4.20	4.2	0.008	1.43	21.0	0.12	20.74	0.01	1.290	18.77	22.35	11.9	84.8	3.3	-2.73	0.77	0.76	—	4.1	0.006	0.82	0.0	0.04	16.60	0.01	1.824	28.21	0.00	8.9	90.8	0.3	-1.60	0.89	0.80	0.83	—	55776	2622	31	1612	88	0	0	logfile
✔	7N62	24192	2021-12-01	2021-06-07	4.0	3.42	—	3.9	0.006	0.81	0.0	0.05	13.91	0.01	2.203	21.11	0.00	14.9	85.1	0.0	-2.74	0.73	0.81	—	3.9	0.004	0.85	0.0	0.05	16.12	0.01	2.120	18.94	0.65	11.3	88.7	0.0	-2.24	0.50	0.71	0.79	—	5613	712	4	0	5	0	0	logfile
✔	5TTP	8467	2021-12-01	2016-11-04	4.8	4.88	—	4.5	0.006	1.36	0.0	0.06	11.70	0.01	2.038	24.92	0.00	14.1	85.2	0.7	-5.87	0.61	0.60	—	4.6	0.002	0.75	0.0	0.04	4.87	0.00	2.268	5.23	0.00	12.2	87.7	0.2	0.48	2.21	0.67	0.70	—	5616	1138	2	0	0	0	0	logfile
✔	6LRQ	0958	2021-12-01	2020-01-16	3.49	3.59	—	4.0	0.009	0.85	0.0	0.05	11.88	0.00	2.205	20.30	0.00	14.8	85.2	0.0	-4.51	0.46	0.71	1.87	4.1	0.006	0.85	0.0	0.05	14.46	0.00	2.147	19.93	0.74	12.8	87.2	0.0	-3.04	1.58	0.46	0.71	1.16	2628	378	6	0	0	0	0	logfile
✔	6J5U	0681	2021-12-01	2019-01-12	3.9	4.02	—	4.0	0.011	1.36	1.0	0.07	14.28	0.01	1.599	12.15	2.32	14.4	85.3	0.4	-5.13	0.78	0.77	1.14	4.0	0.004	0.92	0.0	0.05	16.31	0.01	2.108	23.39	0.58	12.0	88.0	0.0	-2.82	0.88	0.78	0.77	1.42	9288	1162	4	0	2	0	0	logfile
✔	5FN3	3238	2021-12-02	2015-11-10	4.1	4.53	—	4.1	0.011	1.81	26.0	0.10	18.64	0.01	1.021	20.42	11.34	10.7	85.3	4.0	-1.54	0.66	0.60	—	4.1	0.004	0.86	0.0	0.04	13.79	0.01	2.073	20.42	0.00	9.1	90.1	0.8	-0.53	2.22	0.71	0.79	—	10291	1318	5	0	0	0	0	logfile
✔	6N37	9339	2021-12-01	2018-11-14	3.8	3.51	—	4.2	0.009	1.42	0.0	0.06	16.98	0.01	2.399	13.15	0.00	14.7	85.3	0.0	-5.92	0.51	0.77	3.18	3.6	0.004	0.78	0.0	0.04	18.43	0.00	2.266	20.72	0.80	11.2	88.8	0.0	-5.14	0.89	0.52	0.77	2.42	2580	360	10	0	0	0	0	logfile
✔	6NPY	0476	2021-12-01	2019-01-18	3.8	4.03	—	3.8	0.006	1.16	0.0	0.06	16.44	0.01	2.244	8.58	0.84	14.6	85.3	0.1	-4.90	0.79	0.71	0.51	3.8	0.005	0.96	0.0	0.05	17.26	0.01	2.126	25.14	0.72	13.5	86.5	0.0	-2.55	1.81	0.79	0.72	0.29	7586	965	3	0	1	0	0	logfile
✔	6JBH	9790	2021-12-01	2019-01-25	3.94	4.06	—	4.0	0.007	1.23	0.0	0.07	12.50	0.03	2.260	5.98	0.53	14.3	85.5	0.2	-5.84	0.68	0.81	2.48	4.0	0.004	1.02	0.0	0.05	16.10	0.00	2.215	13.39	0.43	15.1	84.9	0.0	-2.27	1.66	0.68	0.81	1.96	8592	1062	4	0	0	0	0	logfile
✔	7LXB	23569	2021-12-01	2021-03-03	3.26	3.63	—	3.7	0.008	1.42	0.0	0.17	17.74	0.01	2.203	22.95	0.58	13.9	85.5	0.6	-2.03	0.76	0.73	1.37	3.7	0.003	0.75	0.0	0.05	18.41	0.00	2.157	15.71	0.40	8.7	91.2	0.1	-1.10	0.51	0.76	0.74	0.71	54280	6928	32	8	16	0	0	logfile

• ← previous
• Page 4 of 85
• next →