Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6H3i	0133	2021-09-04	2018-07-18	3.5	3.59	—	3.5	0.009	0.92	0.0	0.05	10.08	0.01	2.012	39.37	0.40	21.4	78.4	0.2	-5.64	0.78	0.86	4.47	3.5	0.003	0.60	0.0	0.04	13.43	0.00	1.998	49.45	0.18	17.1	82.8	0.1	-4.11	2.53	0.78	0.86	3.18	20599	2597	3	0	0	0	53	logfile
✔	7AST	11904	2021-09-05	2020-10-28	4.0	3.84	—	3.5	0.016	1.10	1.0	0.06	15.36	0.01	1.913	32.08	0.00	20.8	78.6	0.6	-4.78	0.61	0.46	—	3.6	0.018	1.25	1.0	0.05	17.81	0.01	1.899	34.37	0.40	19.4	80.2	0.4	-4.00	1.44	0.64	0.51	—	34518	4365	17	0	36	0	0	logfile
✔	6SHS	10204	2021-09-02	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	24.99	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.002	0.60	0.0	0.05	12.68	0.00	2.200	5.03	0.00	14.9	85.1	0.0	-5.02	1.72	0.72	0.70	—	7068	480	12	0	0	0	3408	logfile
✔	7N64	24193	2021-09-02	2021-06-07	4.2	3.94	—	3.9	0.009	1.05	0.0	0.06	15.15	0.01	2.157	36.15	1.78	20.8	78.9	0.3	-3.80	0.65	0.71	—	3.9	0.003	0.79	0.0	0.05	13.79	0.00	2.174	17.01	0.00	10.9	89.1	0.0	-2.66	1.01	0.63	0.68	—	7189	906	7	0	7	0	0	logfile
✔	7LV0	23528	2021-09-09	2021-02-23	3.2	3.59	—	3.2	0.012	1.25	0.0	0.10	15.70	0.02	1.414	28.73	3.83	19.0	79.0	2.0	-4.79	0.81	0.82	1.87	3.2	0.005	0.77	1.0	0.04	16.50	0.01	1.798	19.35	0.33	13.8	86.1	0.1	-2.86	0.48	0.81	0.83	1.20	147330	5851	60	4734	0	0	0	logfile
✔	5Li4	4052	2021-09-04	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	92.06	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.01	0.0	0.05	13.55	0.01	2.127	27.58	0.00	16.6	82.5	0.9	-3.40	4.65	0.35	0.60	—	20070	2562	6	0	0	0	0	logfile
✔	5W1R	8751	2021-09-04	2017-06-04	4.4	4.48	—	4.4	0.006	1.21	2.0	0.06	14.97	0.01	1.238	41.11	1.30	15.6	79.1	5.4	-5.31	0.66	0.69	—	4.4	0.003	0.89	0.0	0.04	13.17	0.01	2.133	10.84	0.00	8.9	90.3	0.7	-1.34	1.97	0.66	0.68	—	25559	3563	1	0	0	0	0	logfile
✔	7ASE	11893	2021-09-05	2020-10-27	3.33	3.38	—	3.3	0.019	2.20	149.0	0.14	16.87	0.02	0.502	9.23	3.37	14.2	79.1	6.8	-4.38	0.46	0.57	1.25	3.3	0.009	1.02	7.0	0.04	17.00	0.01	1.700	16.08	0.27	11.9	86.9	1.2	-1.81	1.52	0.56	0.77	1.31	136847	11195	54	2225	3	0	0	logfile
✔	5ZLU	6934	2021-09-11	2018-03-29	3.6	3.66	—	3.6	0.008	1.26	2.0	0.07	18.68	0.01	0.401	13.54	2.52	18.9	79.1	1.9	-5.90	0.78	0.77	1.74	3.6	0.006	0.93	2.0	0.05	18.64	0.01	1.790	13.01	0.91	19.7	79.6	0.8	-4.65	0.56	0.78	0.79	0.95	150313	6529	60	4596	4	0	0	logfile
✔	5Y81	6816	2021-09-05	2017-08-18	4.7	4.77	—	4.6	0.012	1.24	3.0	0.06	11.53	0.01	1.581	39.93	14.19	15.5	79.2	5.3	-5.73	0.66	0.69	—	4.6	0.003	0.72	0.0	0.04	9.77	0.00	2.173	9.69	0.19	8.6	90.4	1.0	1.23	0.96	0.70	0.73	—	25723	4095	8	0	360	0	0	logfile
✔	6JXA	9892	2021-09-03	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	28.59	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.1	0.005	1.04	0.0	0.05	11.50	0.01	2.125	24.11	0.00	18.4	78.8	2.9	-2.88	1.81	0.66	0.65	—	14100	2244	1	0	0	0	0	logfile
✔	6S13	10079	2021-09-16	2019-06-18	3.58	3.67	—	5.8	0.023	1.27	2.0	0.06	22.26	0.01	1.596	18.72	21.29	20.5	79.4	0.1	-5.98	0.56	0.28	0.14	3.6	0.012	0.87	2.0	0.04	21.78	0.01	1.315	28.12	1.37	18.9	81.1	0.0	-4.60	2.82	0.68	0.59	0.75	233957	5608	52	4559	0	0	93218	logfile
✔	7C1D	30269	2021-09-02	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	17.40	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	14.89	0.00	2.232	21.81	0.52	20.1	79.9	0.0	-4.46	2.84	0.42	0.76	2.27	2034	306	6	0	0	0	0	logfile
✔	3JD8	6640	2021-09-03	2016-05-01	4.43	4.58	—	4.4	0.018	1.55	5.0	0.24	16.78	0.02	1.335	75.85	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.004	0.94	0.0	0.08	11.97	0.00	2.037	20.31	0.00	8.0	90.9	1.1	-0.39	1.31	0.57	0.73	—	8050	1133	1	0	25	0	0	logfile
✔	5N6W	3595	2021-09-06	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.28	—	4.2	0.028	2.04	4.0	0.05	11.63	0.01	1.888	29.56	0.17	13.8	85.3	0.8	-4.48	1.56	0.69	0.66	—	40752	2512	16	0	0	0	20032	logfile
✔	6oSJ	20183	2021-09-02	2019-05-01	2.8	2.81	—	2.8	0.011	1.13	0.0	0.07	13.69	0.00	2.227	10.71	0.00	18.6	79.7	1.7	-4.71	0.50	0.78	4.82	2.8	0.005	0.81	0.0	0.06	16.78	0.00	2.211	9.56	5.81	19.0	81.0	0.0	-3.80	2.16	0.49	0.79	3.93	4210	610	10	0	0	0	0	logfile
✔	3JAJ	3037	2021-09-15	2015-06-16	3.75	3.82	3.77	3.8	0.013	1.90	339.0	0.13	23.43	0.02	0.312	55.05	20.83	14.7	79.8	5.5	-5.44	0.74	0.80	0.72	3.8	0.006	0.88	0.0	0.04	19.22	0.01	1.862	19.32	1.09	11.4	87.6	1.0	-2.30	1.70	0.77	0.84	1.12	228197	12521	100	5958	193	0	0	logfile
✔	7CAH	30331	2021-09-02	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.79	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.003	0.76	0.0	0.04	14.63	0.01	2.215	14.69	0.00	11.6	88.4	0.0	-3.43	0.60	0.70	0.64	2.05	2889	404	3	0	0	0	0	logfile
✘	6CET	7465	2021-09-03	2018-02-12	4.4	4.41	—	4.3	0.007	1.42	0.0	0.07	13.40	0.01	2.251	8.50	0.96	19.7	80.1	0.2	-5.52	0.67	0.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14012	1741	3	0	0	0	0	logfile
✔	7CGN	30358	2021-09-03	2020-07-01	4.3	4.32	—	4.2	0.006	1.22	0.0	0.05	19.50	0.01	1.836	55.57	19.62	14.3	80.1	5.6	-5.82	0.63	0.69	—	4.2	0.003	0.81	0.0	0.04	13.95	0.00	2.110	10.88	0.12	7.8	91.8	0.4	-1.14	1.69	0.68	0.77	—	15854	2092	14	0	2	0	0	logfile

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