Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BZW	30261	2023-02-19	2020-04-28	4.6	7.66	4.73	6.0	0.003	0.82	0.0	0.05	15.82	0.01	2.176	28.88	0.00	19.4	80.6	0.0	-5.59	0.85	0.67	—	6.5	0.003	0.82	0.0	0.05	14.65	0.01	1.905	21.10	0.00	20.5	79.5	0.0	-2.68	1.83	0.93	0.86	—	9756	1212	12	0	0	0	0	logfile
✔	6EZo	4162	2023-02-22	2017-11-16	4.1	4.20	4.05	4.2	0.008	1.36	4.0	0.09	10.29	0.01	1.569	8.78	3.41	18.5	80.8	0.8	-5.42	0.78	0.79	—	4.1	0.003	0.72	0.0	0.05	8.91	0.00	2.157	4.12	0.00	10.6	89.4	0.1	-2.71	0.49	0.77	0.76	—	18758	3367	11	0	1	0	0	logfile
✔	7FG3	31577	2023-02-18	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.23	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.92	0.0	0.05	16.64	0.01	2.088	24.71	0.10	15.3	84.1	0.5	-3.68	0.78	0.23	0.45	0.35	9054	1166	2	0	0	0	0	logfile
✘	6SW9	10320	2023-02-27	2019-09-20	4.2	5.88	4.46	3.0	0.016	1.26	0.0	0.06	18.23	0.04	1.769	31.75	0.80	19.0	80.8	0.2	-5.60	0.85	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70661	4508	47	1593	41	42	0	logfile
✔	6RTB	4996	2023-02-17	2019-05-22	3.46	3.57	—	3.5	0.009	1.23	0.0	0.07	15.08	0.01	2.122	6.27	2.61	18.9	80.9	0.2	-4.64	0.62	0.79	4.22	3.5	0.004	0.76	0.0	0.05	15.59	0.00	2.167	12.95	1.53	17.5	82.5	0.0	-4.08	0.60	0.62	0.80	3.79	4681	699	10	0	0	0	0	logfile
✘	7DGZ	30676	2023-02-23	2020-11-12	3.8	4.12	—	4.0	0.008	1.42	3.0	0.07	12.24	0.01	1.238	9.03	1.31	17.6	80.9	1.5	-6.15	0.80	0.71	1.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	60921	7992	61	0	21	0	0	logfile
✔	6NY1	8994	2023-02-19	2019-02-10	4.2	4.56	—	4.3	0.007	1.11	0.0	0.06	21.20	0.01	2.099	9.52	0.33	18.6	81.0	0.4	-4.84	0.80	0.80	—	4.4	0.003	0.72	0.0	0.04	20.36	0.00	2.150	15.09	0.00	16.3	83.6	0.1	-2.23	0.59	0.79	0.78	—	9911	783	4	154	121	0	0	logfile
✔	6B40	7046	2023-02-21	2017-09-25	4.3	4.48	—	4.4	0.007	1.13	0.0	0.06	16.61	0.01	2.269	8.08	0.00	18.8	81.0	0.2	-5.22	0.76	0.70	—	4.4	0.003	0.79	0.0	0.04	17.69	0.01	2.079	18.20	0.00	16.2	83.8	0.0	-3.25	2.12	0.80	0.77	—	16202	1800	12	100	42	0	0	logfile
✔	7X26	32959	2023-02-17	2022-02-25	3.685	3.39	—	3.9	0.011	1.46	1.0	0.09	14.53	0.01	2.186	10.90	9.27	16.2	81.1	2.7	-3.21	0.68	0.74	2.38	3.9	0.003	0.79	0.0	0.05	15.97	0.00	2.117	12.79	0.73	9.4	90.2	0.3	-2.46	1.28	0.71	0.77	2.09	4828	641	3	0	0	0	0	logfile
✔	5MKE	3523	2023-02-22	2016-12-04	4.3	4.44	—	4.3	0.009	1.23	8.0	0.07	13.62	0.01	1.806	56.89	0.82	18.5	81.1	0.5	-5.74	0.63	0.63	—	4.4	0.003	0.90	0.0	0.05	14.55	0.00	2.085	23.61	0.06	8.9	91.1	0.0	-3.06	0.93	0.64	0.68	—	16426	1908	11	0	34	0	0	logfile
✔	6BX3	7303	2023-02-19	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.88	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.004	0.86	0.0	0.05	13.11	0.00	2.070	24.58	0.00	17.2	82.7	0.1	-3.48	1.39	0.74	0.72	—	10456	1413	7	0	0	0	0	logfile
✔	6PiF	20349	2023-02-26	2019-06-26	3.4	3.57	3.44	3.5	0.014	1.74	2.0	0.09	16.21	0.00	1.256	6.99	2.17	14.8	81.3	3.9	-4.83	0.64	0.76	2.73	3.5	0.003	0.84	1.0	0.04	16.97	0.00	2.121	11.67	0.49	15.1	84.4	0.5	-2.75	1.58	0.72	0.85	2.23	28954	3448	11	60	0	0	0	logfile
✔	6GJ1	0009	2023-02-20	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.88	0.0	0.05	12.54	0.01	2.080	22.51	0.00	16.1	83.8	0.1	-3.64	1.21	0.85	0.77	—	13013	1638	4	0	0	0	0	logfile
✔	7KVE	23048	2023-02-20	2020-11-27	3.3	3.69	3.38	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.23	0.57	18.2	81.4	0.4	-5.88	0.75	0.73	2.61	3.6	0.004	0.75	0.0	0.05	16.56	0.01	2.115	14.36	0.33	15.8	84.2	0.0	-4.11	1.22	0.75	0.74	2.41	11142	1374	1	0	0	0	0	logfile
✔	5WRG	6679	2023-02-22	2016-12-01	4.3	4.45	—	4.3	0.007	1.37	0.0	0.07	12.06	0.01	2.191	9.91	0.53	18.0	81.4	0.7	-5.05	0.66	0.69	—	4.3	0.003	1.08	0.0	0.05	12.10	0.00	2.000	18.84	0.00	16.9	83.0	0.1	-3.25	1.51	0.67	0.75	—	16317	2208	3	0	0	0	0	logfile
✔	7KVF	23049	2023-02-20	2020-11-28	3.6	4.39	3.76	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.23	0.57	18.2	81.4	0.4	-5.88	0.82	0.66	1.37	3.6	0.003	0.80	0.0	0.05	16.13	0.00	2.157	16.77	0.00	11.9	88.1	0.0	-3.74	2.39	0.87	0.76	0.54	11142	1374	1	0	0	0	0	logfile
✔	5XLP	6731	2023-02-19	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	14.75	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.1	0.003	0.91	0.0	0.04	15.84	0.01	1.956	18.56	0.11	15.4	84.4	0.2	-3.85	2.41	0.65	0.63	—	9952	1343	6	24	0	0	0	logfile
✔	6PiG	20350	2023-02-26	2019-06-26	3.5	3.54	3.59	3.5	0.014	1.75	1.0	0.09	16.07	0.00	2.173	1.98	1.58	15.2	81.4	3.5	-4.85	0.60	0.76	2.54	3.5	0.005	0.87	0.0	0.05	17.22	0.01	2.097	12.08	0.49	17.1	82.3	0.6	-3.03	0.58	0.66	0.80	2.35	28867	3439	11	60	0	0	0	logfile
✔	7V47	31702	2023-02-16	2021-08-12	2.8	2.80	—	3.0	0.007	0.78	0.0	0.06	12.91	0.00	2.567	6.32	0.00	18.6	81.4	0.0	-5.86	0.44	0.80	6.31	2.9	0.005	0.72	0.0	0.06	17.25	0.00	2.432	8.29	3.25	20.3	79.7	0.0	-4.30	0.33	0.44	0.80	6.27	2484	366	6	0	0	0	0	logfile
✔	6TNF	10531	2023-02-19	2019-12-07	3.8	2.90	3.67	2.7	0.032	1.64	0.0	0.32	19.07	0.01	2.236	8.40	0.00	17.8	81.5	0.7	-5.32	0.60	0.56	—	2.6	0.005	1.03	0.0	0.08	13.61	0.01	2.106	13.33	0.00	19.1	80.8	0.1	-3.46	0.54	0.65	0.64	—	9559	2206	5	0	66	0	0	logfile

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