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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7BZW | 30261 | 2023-02-19 | 2020-04-28 | 4.6 | 7.66 | 4.73 | 6.0 | 0.003 | 0.82 | 0.0 | 0.05 | 15.82 | 0.01 | 2.176 | 28.88 | 0.00 | 19.4 | 80.6 | 0.0 | -5.59 | 0.85 | 0.67 | — | 6.5 | 0.003 | 0.82 | 0.0 | 0.05 | 14.65 | 0.01 | 1.905 | 21.10 | 0.00 | 20.5 | 79.5 | 0.0 | -2.68 | 1.83 | 0.93 | 0.86 | — | 9756 | 1212 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EZo | 4162 | 2023-02-22 | 2017-11-16 | 4.1 | 4.20 | 4.05 | 4.2 | 0.008 | 1.36 | 4.0 | 0.09 | 10.29 | 0.01 | 1.569 | 8.78 | 3.41 | 18.5 | 80.8 | 0.8 | -5.42 | 0.78 | 0.79 | — | 4.1 | 0.003 | 0.72 | 0.0 | 0.05 | 8.91 | 0.00 | 2.157 | 4.12 | 0.00 | 10.6 | 89.4 | 0.1 | -2.71 | 0.49 | 0.77 | 0.76 | — | 18758 | 3367 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 7FG3 | 31577 | 2023-02-18 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.23 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.004 | 0.92 | 0.0 | 0.05 | 16.64 | 0.01 | 2.088 | 24.71 | 0.10 | 15.3 | 84.1 | 0.5 | -3.68 | 0.78 | 0.23 | 0.45 | 0.35 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6SW9 | 10320 | 2023-02-27 | 2019-09-20 | 4.2 | 5.88 | 4.46 | 3.0 | 0.016 | 1.26 | 0.0 | 0.06 | 18.23 | 0.04 | 1.769 | 31.75 | 0.80 | 19.0 | 80.8 | 0.2 | -5.60 | 0.85 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70661 | 4508 | 47 | 1593 | 41 | 42 | 0 | logfile |
✔ | 6RTB | 4996 | 2023-02-17 | 2019-05-22 | 3.46 | 3.57 | — | 3.5 | 0.009 | 1.23 | 0.0 | 0.07 | 15.08 | 0.01 | 2.122 | 6.27 | 2.61 | 18.9 | 80.9 | 0.2 | -4.64 | 0.62 | 0.79 | 4.22 | 3.5 | 0.004 | 0.76 | 0.0 | 0.05 | 15.59 | 0.00 | 2.167 | 12.95 | 1.53 | 17.5 | 82.5 | 0.0 | -4.08 | 0.60 | 0.62 | 0.80 | 3.79 | 4681 | 699 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 7DGZ | 30676 | 2023-02-23 | 2020-11-12 | 3.8 | 4.12 | — | 4.0 | 0.008 | 1.42 | 3.0 | 0.07 | 12.24 | 0.01 | 1.238 | 9.03 | 1.31 | 17.6 | 80.9 | 1.5 | -6.15 | 0.80 | 0.71 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60921 | 7992 | 61 | 0 | 21 | 0 | 0 | logfile |
✔ | 6NY1 | 8994 | 2023-02-19 | 2019-02-10 | 4.2 | 4.56 | — | 4.3 | 0.007 | 1.11 | 0.0 | 0.06 | 21.20 | 0.01 | 2.099 | 9.52 | 0.33 | 18.6 | 81.0 | 0.4 | -4.84 | 0.80 | 0.80 | — | 4.4 | 0.003 | 0.72 | 0.0 | 0.04 | 20.36 | 0.00 | 2.150 | 15.09 | 0.00 | 16.3 | 83.6 | 0.1 | -2.23 | 0.59 | 0.79 | 0.78 | — | 9911 | 783 | 4 | 154 | 121 | 0 | 0 | logfile |
✔ | 6B40 | 7046 | 2023-02-21 | 2017-09-25 | 4.3 | 4.48 | — | 4.4 | 0.007 | 1.13 | 0.0 | 0.06 | 16.61 | 0.01 | 2.269 | 8.08 | 0.00 | 18.8 | 81.0 | 0.2 | -5.22 | 0.76 | 0.70 | — | 4.4 | 0.003 | 0.79 | 0.0 | 0.04 | 17.69 | 0.01 | 2.079 | 18.20 | 0.00 | 16.2 | 83.8 | 0.0 | -3.25 | 2.12 | 0.80 | 0.77 | — | 16202 | 1800 | 12 | 100 | 42 | 0 | 0 | logfile |
✔ | 7X26 | 32959 | 2023-02-17 | 2022-02-25 | 3.685 | 3.39 | — | 3.9 | 0.011 | 1.46 | 1.0 | 0.09 | 14.53 | 0.01 | 2.186 | 10.90 | 9.27 | 16.2 | 81.1 | 2.7 | -3.21 | 0.68 | 0.74 | 2.38 | 3.9 | 0.003 | 0.79 | 0.0 | 0.05 | 15.97 | 0.00 | 2.117 | 12.79 | 0.73 | 9.4 | 90.2 | 0.3 | -2.46 | 1.28 | 0.71 | 0.77 | 2.09 | 4828 | 641 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5MKE | 3523 | 2023-02-22 | 2016-12-04 | 4.3 | 4.44 | — | 4.3 | 0.009 | 1.23 | 8.0 | 0.07 | 13.62 | 0.01 | 1.806 | 56.89 | 0.82 | 18.5 | 81.1 | 0.5 | -5.74 | 0.63 | 0.63 | — | 4.4 | 0.003 | 0.90 | 0.0 | 0.05 | 14.55 | 0.00 | 2.085 | 23.61 | 0.06 | 8.9 | 91.1 | 0.0 | -3.06 | 0.93 | 0.64 | 0.68 | — | 16426 | 1908 | 11 | 0 | 34 | 0 | 0 | logfile |
✔ | 6BX3 | 7303 | 2023-02-19 | 2017-12-16 | 4.3 | 4.71 | — | 4.4 | 0.007 | 1.49 | 0.0 | 0.08 | 12.65 | 0.01 | 1.094 | 24.88 | 0.97 | 18.8 | 81.2 | 0.1 | -5.00 | 0.74 | 0.72 | — | 4.4 | 0.004 | 0.86 | 0.0 | 0.05 | 13.11 | 0.00 | 2.070 | 24.58 | 0.00 | 17.2 | 82.7 | 0.1 | -3.48 | 1.39 | 0.74 | 0.72 | — | 10456 | 1413 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PiF | 20349 | 2023-02-26 | 2019-06-26 | 3.4 | 3.57 | 3.44 | 3.5 | 0.014 | 1.74 | 2.0 | 0.09 | 16.21 | 0.00 | 1.256 | 6.99 | 2.17 | 14.8 | 81.3 | 3.9 | -4.83 | 0.64 | 0.76 | 2.73 | 3.5 | 0.003 | 0.84 | 1.0 | 0.04 | 16.97 | 0.00 | 2.121 | 11.67 | 0.49 | 15.1 | 84.4 | 0.5 | -2.75 | 1.58 | 0.72 | 0.85 | 2.23 | 28954 | 3448 | 11 | 60 | 0 | 0 | 0 | logfile |
✔ | 6GJ1 | 0009 | 2023-02-20 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.90 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.003 | 0.88 | 0.0 | 0.05 | 12.54 | 0.01 | 2.080 | 22.51 | 0.00 | 16.1 | 83.8 | 0.1 | -3.64 | 1.21 | 0.85 | 0.77 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KVE | 23048 | 2023-02-20 | 2020-11-27 | 3.3 | 3.69 | 3.38 | 3.6 | 0.005 | 0.82 | 2.0 | 0.05 | 14.67 | 0.00 | 2.204 | 17.23 | 0.57 | 18.2 | 81.4 | 0.4 | -5.88 | 0.75 | 0.73 | 2.61 | 3.6 | 0.004 | 0.75 | 0.0 | 0.05 | 16.56 | 0.01 | 2.115 | 14.36 | 0.33 | 15.8 | 84.2 | 0.0 | -4.11 | 1.22 | 0.75 | 0.74 | 2.41 | 11142 | 1374 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WRG | 6679 | 2023-02-22 | 2016-12-01 | 4.3 | 4.45 | — | 4.3 | 0.007 | 1.37 | 0.0 | 0.07 | 12.06 | 0.01 | 2.191 | 9.91 | 0.53 | 18.0 | 81.4 | 0.7 | -5.05 | 0.66 | 0.69 | — | 4.3 | 0.003 | 1.08 | 0.0 | 0.05 | 12.10 | 0.00 | 2.000 | 18.84 | 0.00 | 16.9 | 83.0 | 0.1 | -3.25 | 1.51 | 0.67 | 0.75 | — | 16317 | 2208 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KVF | 23049 | 2023-02-20 | 2020-11-28 | 3.6 | 4.39 | 3.76 | 3.6 | 0.005 | 0.82 | 2.0 | 0.05 | 14.67 | 0.00 | 2.204 | 17.23 | 0.57 | 18.2 | 81.4 | 0.4 | -5.88 | 0.82 | 0.66 | 1.37 | 3.6 | 0.003 | 0.80 | 0.0 | 0.05 | 16.13 | 0.00 | 2.157 | 16.77 | 0.00 | 11.9 | 88.1 | 0.0 | -3.74 | 2.39 | 0.87 | 0.76 | 0.54 | 11142 | 1374 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XLP | 6731 | 2023-02-19 | 2017-05-11 | 4.2 | 4.23 | — | 4.2 | 0.009 | 1.36 | 0.0 | 0.06 | 14.75 | 0.01 | 2.194 | 12.48 | 0.57 | 18.2 | 81.4 | 0.5 | -5.53 | 0.62 | 0.58 | — | 4.1 | 0.003 | 0.91 | 0.0 | 0.04 | 15.84 | 0.01 | 1.956 | 18.56 | 0.11 | 15.4 | 84.4 | 0.2 | -3.85 | 2.41 | 0.65 | 0.63 | — | 9952 | 1343 | 6 | 24 | 0 | 0 | 0 | logfile |
✔ | 6PiG | 20350 | 2023-02-26 | 2019-06-26 | 3.5 | 3.54 | 3.59 | 3.5 | 0.014 | 1.75 | 1.0 | 0.09 | 16.07 | 0.00 | 2.173 | 1.98 | 1.58 | 15.2 | 81.4 | 3.5 | -4.85 | 0.60 | 0.76 | 2.54 | 3.5 | 0.005 | 0.87 | 0.0 | 0.05 | 17.22 | 0.01 | 2.097 | 12.08 | 0.49 | 17.1 | 82.3 | 0.6 | -3.03 | 0.58 | 0.66 | 0.80 | 2.35 | 28867 | 3439 | 11 | 60 | 0 | 0 | 0 | logfile |
✔ | 7V47 | 31702 | 2023-02-16 | 2021-08-12 | 2.8 | 2.80 | — | 3.0 | 0.007 | 0.78 | 0.0 | 0.06 | 12.91 | 0.00 | 2.567 | 6.32 | 0.00 | 18.6 | 81.4 | 0.0 | -5.86 | 0.44 | 0.80 | 6.31 | 2.9 | 0.005 | 0.72 | 0.0 | 0.06 | 17.25 | 0.00 | 2.432 | 8.29 | 3.25 | 20.3 | 79.7 | 0.0 | -4.30 | 0.33 | 0.44 | 0.80 | 6.27 | 2484 | 366 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TNF | 10531 | 2023-02-19 | 2019-12-07 | 3.8 | 2.90 | 3.67 | 2.7 | 0.032 | 1.64 | 0.0 | 0.32 | 19.07 | 0.01 | 2.236 | 8.40 | 0.00 | 17.8 | 81.5 | 0.7 | -5.32 | 0.60 | 0.56 | — | 2.6 | 0.005 | 1.03 | 0.0 | 0.08 | 13.61 | 0.01 | 2.106 | 13.33 | 0.00 | 19.1 | 80.8 | 0.1 | -3.46 | 0.54 | 0.65 | 0.64 | — | 9559 | 2206 | 5 | 0 | 66 | 0 | 0 | logfile |