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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oF2 | 20040 | 2024-03-15 | 2019-03-28 | 2.9 | 2.77 | — | 3.7 | 0.006 | 1.00 | 0.0 | 0.05 | 14.67 | 0.01 | 2.062 | 8.80 | 1.02 | 17.7 | 80.2 | 2.2 | -4.30 | 0.69 | 0.63 | 0.25 | 3.4 | 0.004 | 1.00 | 1.0 | 0.05 | 17.01 | 0.01 | 2.004 | 11.03 | 2.46 | 6.9 | 93.1 | 0.0 | 0.41 | 1.58 | 0.79 | 0.83 | 2.07 | 11062 | 1422 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 6GTD | 0062 | 2024-03-11 | 2018-06-18 | 4.24 | 4.28 | — | 3.9 | 0.009 | 1.26 | 0.0 | 0.08 | 23.09 | 0.01 | 2.138 | 13.01 | 0.00 | 19.8 | 80.2 | 0.0 | -5.72 | 0.78 | 0.65 | — | 3.9 | 0.009 | 1.12 | 0.0 | 0.08 | 22.54 | 0.01 | 1.891 | 37.73 | 0.00 | 26.1 | 73.8 | 0.1 | -3.90 | 0.98 | 0.79 | 0.68 | — | 6456 | 1269 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 6TNG | 10532 | 2024-03-11 | 2019-12-07 | 4.1 | 4.25 | 3.91 | 4.0 | 0.008 | 1.39 | 0.0 | 0.00 | 8.74 | 0.01 | 2.183 | 11.35 | 0.00 | 18.9 | 80.2 | 0.8 | -5.16 | 0.75 | 0.70 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.00 | 6.39 | 0.00 | 2.200 | 10.87 | 0.00 | 22.8 | 77.1 | 0.1 | -3.08 | 0.35 | 0.76 | 0.72 | — | 8240 | 2060 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5KPX | 8282 | 2024-03-02 | 2016-07-05 | 3.9 | 5.30 | 4.08 | 3.8 | 0.008 | 1.18 | 6.0 | 0.09 | 22.84 | 0.01 | 2.087 | 29.88 | 0.58 | 13.2 | 80.2 | 6.6 | -4.56 | 0.90 | 0.77 | 0.50 | 4.0 | 0.006 | 0.80 | 1.0 | 0.04 | 23.90 | 0.01 | 1.550 | 36.46 | 4.53 | 11.5 | 87.5 | 1.0 | -2.35 | 1.08 | 0.94 | 0.90 | 0.13 | 154603 | 6623 | 59 | 4812 | 0 | 0 | 0 | logfile |
✔ | 7JMN | 22397 | 2024-03-16 | 2020-08-02 | 3.58 | 3.99 | — | 3.8 | 0.004 | 0.83 | 0.0 | 0.05 | 14.64 | 0.01 | 2.115 | 11.08 | 0.07 | 19.3 | 80.2 | 0.6 | -5.81 | 0.79 | 0.78 | 1.61 | 3.8 | 0.003 | 0.80 | 0.0 | 0.04 | 16.43 | 0.01 | 2.164 | 10.14 | 3.84 | 16.3 | 83.4 | 0.2 | -3.65 | 1.22 | 0.78 | 0.77 | 1.14 | 13633 | 1756 | 5 | 0 | 52 | 0 | 0 | logfile |
✔ | 6RAX | 4786 | 2024-03-24 | 2019-04-08 | 3.99 | 4.07 | 3.97 | 4.1 | 0.011 | 1.46 | 27.0 | 0.13 | 18.19 | 0.01 | 1.308 | 23.93 | 6.70 | 19.2 | 80.3 | 0.5 | -5.61 | 0.55 | 0.58 | 0.25 | 4.0 | 0.005 | 0.90 | 1.0 | 0.05 | 18.58 | 0.01 | 1.957 | 18.48 | 4.22 | 12.8 | 87.2 | 0.0 | -3.18 | 1.44 | 0.57 | 0.55 | 0.29 | 40970 | 5062 | 19 | 29 | 6 | 0 | 0 | logfile |
✔ | 5KPV | 8280 | 2024-03-02 | 2016-07-05 | 4.1 | 5.32 | 4.22 | 4.1 | 0.008 | 1.18 | 5.0 | 0.09 | 22.93 | 0.01 | 2.074 | 34.60 | 0.66 | 13.5 | 80.3 | 6.2 | -4.67 | 0.90 | 0.78 | — | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 23.46 | 0.01 | 2.026 | 29.54 | 0.00 | 10.9 | 88.2 | 0.9 | -1.99 | 1.78 | 0.94 | 0.90 | — | 154603 | 6623 | 59 | 4812 | 0 | 0 | 0 | logfile |
✔ | 7X7N | 33042 | 2024-03-20 | 2022-03-10 | 4.47 | 4.03 | 4.49 | 4.2 | 0.013 | 1.05 | 0.0 | 0.06 | 15.66 | 0.01 | 1.956 | 29.11 | 0.52 | 19.6 | 80.3 | 0.1 | -5.63 | 0.73 | 0.77 | — | 4.1 | 0.003 | 0.75 | 0.0 | 0.05 | 13.97 | 0.00 | 1.260 | 13.74 | 0.00 | 9.1 | 90.9 | 0.0 | -2.48 | 0.74 | 0.72 | 0.76 | — | 26493 | 3314 | 12 | 0 | 45 | 0 | 0 | logfile |
✔ | 8i7J | 35216 | 2024-03-16 | 2023-01-31 | 4.6 | 4.67 | 4.57 | 4.1 | 0.006 | 0.99 | 0.0 | 0.05 | 25.02 | 0.01 | 1.679 | 40.27 | 0.05 | 19.3 | 80.4 | 0.3 | -3.88 | 0.78 | 0.71 | — | 4.1 | 0.003 | 0.71 | 0.0 | 0.04 | 23.92 | 0.00 | 1.768 | 22.33 | 0.02 | 13.1 | 86.7 | 0.2 | -2.23 | 1.72 | 0.81 | 0.73 | — | 76299 | 4874 | 39 | 1780 | 5 | 0 | 0 | logfile |
✔ | 6CND | 7532 | 2024-03-25 | 2018-03-08 | 4.8 | 4.76 | — | 4.5 | 0.006 | 1.14 | 3.0 | 0.06 | 14.38 | 0.01 | 2.023 | 38.71 | 0.72 | 18.0 | 80.4 | 1.6 | -5.18 | 0.75 | 0.67 | — | 4.5 | 0.003 | 0.83 | 0.0 | 0.05 | 15.26 | 0.00 | 2.097 | 19.30 | 0.04 | 11.4 | 87.7 | 0.9 | -2.13 | 0.86 | 0.84 | 0.79 | — | 47836 | 5695 | 27 | 112 | 69 | 0 | 0 | logfile |
✔ | 6B19 | 7031 | 2024-03-10 | 2017-09-18 | 4.5 | 4.61 | — | 4.4 | 0.023 | 1.38 | 0.0 | 0.05 | 15.60 | 0.01 | 2.201 | 16.18 | 0.00 | 19.4 | 80.5 | 0.1 | -5.73 | 0.74 | 0.63 | — | 4.4 | 0.003 | 0.84 | 0.0 | 0.04 | 17.80 | 0.00 | 1.954 | 30.13 | 0.00 | 24.3 | 75.7 | 0.0 | -4.85 | 1.30 | 0.77 | 0.69 | — | 5699 | 907 | 4 | 38 | 0 | 0 | 409 | logfile |
✔ | 6CNF | 7533 | 2024-03-25 | 2018-03-08 | 4.5 | 4.70 | — | 4.4 | 0.006 | 1.16 | 9.0 | 0.06 | 14.03 | 0.01 | 1.905 | 40.19 | 0.74 | 17.9 | 80.5 | 1.6 | -5.23 | 0.74 | 0.65 | — | 4.4 | 0.004 | 0.87 | 0.0 | 0.05 | 15.29 | 0.01 | 2.044 | 24.57 | 0.00 | 12.7 | 86.3 | 1.0 | -2.70 | 1.47 | 0.85 | 0.81 | — | 47675 | 5695 | 27 | 104 | 69 | 0 | 0 | logfile |
✔ | 7SZ4 | 25560 | 2024-03-25 | 2021-11-25 | 4.8 | 7.97 | 4.67 | 3.9 | 0.003 | 0.79 | 0.0 | 0.05 | 14.41 | 0.01 | 2.097 | 25.58 | 0.02 | 18.8 | 80.5 | 0.7 | -3.20 | 0.89 | 0.78 | — | 4.1 | 0.004 | 0.83 | 0.0 | 0.05 | 14.66 | 0.01 | 2.095 | 35.03 | 0.00 | 20.3 | 79.0 | 0.7 | -3.12 | 0.50 | 0.89 | 0.79 | — | 48242 | 5973 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WHX | 21679 | 2024-03-19 | 2020-04-08 | 4.09 | 4.50 | — | 4.4 | 0.007 | 0.87 | 0.0 | 0.05 | 14.91 | 0.01 | 2.048 | 18.82 | 0.13 | 19.4 | 80.6 | 0.0 | -5.50 | 0.59 | 0.70 | — | 4.4 | 0.004 | 0.71 | 0.0 | 0.05 | 13.54 | 0.00 | 2.094 | 11.82 | 0.00 | 10.8 | 89.2 | 0.0 | -2.25 | 0.54 | 0.62 | 0.75 | — | 22925 | 3154 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7BZW | 30261 | 2024-03-14 | 2020-04-28 | 4.6 | 7.66 | 4.73 | 6.0 | 0.003 | 0.82 | 0.0 | 0.05 | 15.82 | 0.01 | 2.176 | 28.88 | 0.00 | 19.4 | 80.6 | 0.0 | -5.59 | 0.85 | 0.67 | — | 6.5 | 0.004 | 0.82 | 0.0 | 0.05 | 15.33 | 0.01 | 2.096 | 25.68 | 0.00 | 15.2 | 84.8 | 0.0 | -3.70 | 1.72 | 0.94 | 0.87 | — | 9756 | 1212 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FG3 | 31577 | 2024-03-14 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.29 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.004 | 0.90 | 0.0 | 0.05 | 16.67 | 0.01 | 2.017 | 24.21 | 3.48 | 15.3 | 84.1 | 0.6 | -3.68 | 0.72 | 0.23 | 0.46 | 0.35 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9R | 6271 | 2024-03-21 | 2015-02-17 | 3.9 | 3.83 | — | 3.8 | 0.006 | 0.89 | 0.0 | 0.04 | 9.86 | 0.00 | 2.112 | 3.86 | 0.89 | 14.5 | 80.8 | 4.7 | -5.43 | 0.59 | 0.82 | 2.58 | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 15.88 | 0.00 | 2.030 | 14.51 | 6.10 | 9.6 | 89.4 | 1.0 | -2.04 | 1.32 | 0.63 | 0.83 | 2.06 | 103824 | 13788 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 6SW9 | 10320 | 2024-03-15 | 2019-09-20 | 4.2 | 5.88 | 4.46 | 3.0 | 0.014 | 1.26 | 0.0 | 0.06 | 23.52 | 0.02 | 1.769 | 31.76 | 0.80 | 19.0 | 80.8 | 0.2 | -5.60 | 0.85 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70661 | 4508 | 47 | 1593 | 41 | 42 | 0 | logfile |
✔ | 7FES | 31562 | 2024-03-22 | 2021-07-21 | 3.4 | 3.53 | — | 4.2 | 0.011 | 1.21 | 5.0 | 0.10 | 15.70 | 0.01 | 1.102 | 14.90 | 2.30 | 17.7 | 80.8 | 1.5 | -5.10 | 0.70 | 0.79 | 1.36 | 3.4 | 0.004 | 0.77 | 5.0 | 0.09 | 17.33 | 0.00 | 2.053 | 13.84 | 2.97 | 13.4 | 86.5 | 0.2 | -2.92 | 2.43 | 0.71 | 0.81 | 1.40 | 33873 | 2198 | 14 | 0 | 0 | 0 | 17095 | logfile |
✔ | 6RAW | 4785 | 2024-03-24 | 2019-04-08 | 3.7 | 3.80 | 3.66 | 4.1 | 0.007 | 1.29 | 19.0 | 0.13 | 18.38 | 0.01 | 1.198 | 17.63 | 6.37 | 18.9 | 80.8 | 0.3 | -5.55 | 0.47 | 0.49 | 0.14 | 3.8 | 0.004 | 0.84 | 0.0 | 0.04 | 18.72 | 0.01 | 2.095 | 15.88 | 4.54 | 12.3 | 87.7 | 0.0 | -3.13 | 4.00 | 0.58 | 0.63 | 0.43 | 39710 | 4877 | 18 | 39 | 6 | 0 | 0 | logfile |