Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RAY	4787	2023-07-17	2019-04-08	4.28	4.39	4.31	4.4	0.013	1.77	39.0	0.16	18.46	0.02	1.031	19.77	7.45	17.4	81.8	0.8	-5.68	0.58	0.59	—	4.3	0.003	0.82	0.0	0.04	15.30	0.00	2.039	15.64	0.09	11.4	88.6	0.0	-3.15	1.15	0.61	0.58	—	39071	4887	18	13	6	0	0	logfile
✔	7WXi	32880	2023-07-04	2022-02-14	4.2	4.31	4.10	4.2	0.008	0.87	0.0	0.05	15.47	0.00	2.148	24.87	0.58	18.2	81.8	0.0	-4.77	0.78	0.81	—	4.2	0.003	0.74	0.0	0.04	13.94	0.00	2.179	14.04	0.00	8.3	91.7	0.0	-1.11	1.26	0.78	0.80	—	6522	862	4	0	0	0	0	logfile
✘	5GJR	9512	2023-07-17	2016-07-01	3.5	3.65	—	3.5	0.013	1.53	38.0	0.08	16.77	0.01	1.114	63.72	11.56	13.2	81.8	5.0	-4.66	0.71	0.77	1.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	142753	19945	76	0	12	0	0	logfile
✔	6WHU	21676	2023-07-11	2020-04-08	3.93	4.34	—	4.2	0.009	0.94	0.0	0.05	15.07	0.00	2.095	18.95	0.72	18.0	81.8	0.2	-4.87	0.69	0.75	1.46	4.2	0.004	0.76	0.0	0.05	16.15	0.00	2.133	11.93	0.68	11.5	88.5	0.0	-1.64	0.55	0.73	0.81	1.57	23368	3120	10	0	16	0	0	logfile
✔	5XLo	6729	2023-07-07	2017-05-11	3.8	3.91	—	3.9	0.009	1.37	0.0	0.06	14.03	0.01	2.050	13.55	0.29	17.3	81.9	0.8	-6.02	0.58	0.64	0.55	3.9	0.004	0.89	0.0	0.04	17.39	0.01	2.066	20.24	0.88	15.6	84.1	0.3	-4.03	1.62	0.62	0.67	0.65	15413	2073	9	38	0	0	0	logfile
✘	6oF3	20041	2023-07-06	2019-03-28	3.0	2.82	—	3.7	0.008	1.59	2.0	0.08	14.70	0.01	2.058	3.96	0.85	16.1	81.9	2.0	-4.36	0.70	0.65	0.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11096	1430	6	0	4	0	0	logfile
✔	5Lii	4053	2023-07-03	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.003	0.88	0.0	0.04	15.96	0.01	2.201	13.15	1.41	14.6	84.7	0.7	-4.22	0.87	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile
✔	5X0M	6698	2023-07-05	2017-01-21	3.8	3.85	—	3.9	0.009	1.41	2.0	0.06	21.10	0.01	1.915	54.20	11.48	12.9	81.9	5.2	-5.95	0.39	0.57	0.58	3.8	0.004	0.95	0.0	0.05	17.44	0.01	2.171	14.98	0.28	10.9	88.4	0.8	-1.15	1.82	0.53	0.75	1.40	10654	1323	8	0	20	0	0	logfile
✔	6F0X	4166	2023-07-10	2017-11-20	4.6	4.72	—	4.6	0.007	0.97	0.0	0.05	9.95	0.01	1.884	34.29	0.00	17.6	81.9	0.5	-5.29	0.76	0.77	—	4.6	0.005	0.86	0.0	0.05	13.16	0.01	2.069	26.97	0.09	10.0	89.7	0.3	-1.81	1.01	0.79	0.79	—	20450	2589	14	0	5	0	0	logfile
✔	7oLE	12979	2023-07-12	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	42.05	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.005	0.85	0.0	0.04	15.96	0.00	2.067	24.45	0.57	11.8	88.0	0.2	-2.00	1.97	0.76	0.74	0.66	26995	2899	14	0	1129	0	0	logfile
✔	5ND8	3624	2023-07-16	2017-03-07	3.7	3.81	—	3.7	0.009	1.03	1.0	0.05	14.85	0.01	1.019	7.55	0.73	17.3	82.1	0.6	-5.61	0.77	0.77	1.17	3.7	0.003	0.65	0.0	0.03	15.24	0.00	2.007	16.09	0.86	10.7	89.3	0.1	-2.72	1.30	0.80	0.82	1.16	141043	5462	52	4568	0	0	0	logfile
✔	5X6o	6708	2023-07-09	2017-02-22	3.9	4.03	—	3.9	0.007	1.01	4.0	0.06	11.26	0.00	1.863	21.05	1.64	15.8	82.1	2.2	-5.44	0.60	0.72	1.68	3.9	0.003	0.79	0.0	0.04	14.79	0.00	2.177	10.11	0.29	8.4	90.3	1.3	-0.74	0.82	0.62	0.76	0.97	19309	2701	2	0	0	0	0	logfile
✔	6UXV	20933	2023-07-08	2019-11-08	4.7	4.98	—	4.7	0.006	0.88	0.0	0.05	15.16	0.01	1.532	29.48	0.48	17.7	82.1	0.3	-5.06	0.80	0.81	—	4.7	0.003	0.77	0.0	0.04	14.49	0.00	2.098	16.85	0.06	11.6	88.2	0.1	-1.00	0.73	0.79	0.79	—	16649	1920	15	0	273	0	0	logfile
✔	7o7o	12751	2023-07-18	2021-04-13	4.8	5.79	—	6.6	0.011	1.24	5.0	0.06	15.67	0.02	1.564	17.48	0.43	17.4	82.1	0.5	-5.42	0.81	0.69	—	6.6	0.005	0.93	0.0	0.05	14.51	0.01	2.026	38.30	0.02	16.2	83.7	0.1	-3.78	0.83	0.81	0.71	—	42642	5376	20	0	52	0	0	logfile
✔	7AKV	11814	2023-07-04	2020-10-02	3.6	3.04	3.41	3.7	0.004	0.65	0.0	0.04	14.25	0.00	2.005	76.42	0.16	17.7	82.2	0.1	-4.19	0.81	0.82	2.44	3.7	0.002	0.55	0.0	0.04	16.00	0.00	2.063	70.95	0.47	12.5	87.4	0.1	-3.09	0.86	0.81	0.82	1.88	6201	799	2	0	0	0	245	logfile
✔	6SJ6	10212	2023-07-13	2019-08-12	3.23	3.28	—	3.2	0.010	1.05	0.0	0.06	17.17	0.01	1.886	4.33	0.14	17.7	82.2	0.2	-6.09	0.78	0.78	3.43	3.2	0.005	0.78	0.0	0.04	17.22	0.01	1.839	8.44	0.51	12.8	87.2	0.0	-3.73	2.00	0.80	0.80	2.36	78296	2611	27	2697	59	0	0	logfile
✘	6WHT	21675	2023-07-10	2020-04-08	4.39	5.00	—	4.6	0.006	0.85	0.0	0.05	12.85	0.01	1.983	23.64	0.63	17.3	82.3	0.3	-5.16	0.65	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20532	3082	10	0	8	0	0	logfile
✔	7E3C	30979	2023-07-03	2021-02-08	4.2	3.87	—	3.7	0.026	1.55	0.0	0.05	13.84	0.01	2.151	21.49	0.00	17.2	82.3	0.5	-3.63	0.79	0.79	—	3.7	0.004	0.75	0.0	0.05	13.96	0.00	2.140	14.75	0.00	12.6	87.4	0.0	-3.24	1.57	0.79	0.79	—	2937	405	4	0	1	0	0	logfile
✔	6SoF	10273	2023-07-14	2019-08-29	4.3	4.23	4.20	4.1	0.006	0.93	0.0	0.05	14.59	0.01	2.017	10.51	0.62	17.7	82.3	0.0	-5.47	0.82	0.72	—	4.1	0.003	0.67	0.0	0.04	13.36	0.00	1.934	15.84	0.00	15.3	84.7	0.0	-3.90	1.45	0.82	0.72	—	30333	1966	12	0	0	0	14564	logfile
✔	8E14	27823	2023-07-06	2022-08-09	3.36	4.87	3.36	3.5	0.007	1.12	1.0	0.08	24.71	0.01	2.182	16.48	0.41	17.7	82.3	0.0	-2.84	0.92	0.86	0.70	3.5	0.003	0.70	0.0	0.04	24.61	0.00	2.177	15.59	0.31	17.1	82.9	0.0	-2.52	0.32	0.92	0.86	0.85	12442	1161	16	160	2	0	0	logfile

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