Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5Z1L	6876	2021-06-03	2017-12-26	4.0	3.76	—	4.0	0.004	0.99	0.0	0.07	9.07	0.01	2.380	2.79	0.65	12.5	87.5	0.0	-4.25	0.53	0.79	—	4.0	0.003	0.79	0.0	0.05	14.67	0.01	2.153	8.73	0.36	12.9	86.9	0.2	-2.54	0.67	0.54	0.80	—	25560	3582	18	0	0	0	0	logfile
✔	6V0B	20986	2021-06-02	2019-11-18	4.1	4.28	4.05	4.1	0.006	0.98	0.0	0.06	15.05	0.01	2.272	8.86	0.51	7.9	92.1	0.0	-4.96	0.82	0.74	—	4.1	0.004	0.73	0.0	0.05	13.79	0.00	2.091	19.98	0.00	9.3	90.7	0.0	-2.76	1.28	0.82	0.74	—	12485	1530	5	0	0	0	0	logfile
✔	5N9Y	3605	2021-06-02	2017-02-27	4.2	4.37	—	4.2	0.008	1.29	0.0	0.07	12.87	0.01	2.233	12.59	2.02	8.3	91.7	0.0	-5.18	0.79	0.82	—	4.2	0.004	0.91	0.0	0.05	13.13	0.01	2.113	20.74	0.00	5.8	94.2	0.0	-1.02	1.66	0.79	0.82	—	12835	1635	5	0	0	0	0	logfile
✔	6T25	10367	2021-06-02	2019-10-07	3.6	3.57	3.47	3.7	0.018	1.61	5.0	0.09	12.04	0.01	1.335	3.77	0.32	2.5	97.5	0.0	-0.96	0.67	0.81	3.25	3.6	0.003	0.69	5.0	0.04	15.53	0.00	2.021	8.23	0.26	2.1	97.9	0.0	0.78	2.65	0.68	0.83	2.18	14590	1835	15	0	20	0	0	logfile
✔	6T1Y	10363	2021-06-02	2019-10-07	3.3	3.22	3.26	3.3	0.018	1.62	5.0	0.08	12.34	0.01	1.332	2.54	0.32	5.2	94.8	0.0	-1.04	0.71	0.84	3.29	3.3	0.005	0.72	5.0	0.04	15.94	0.00	2.047	7.74	0.51	3.2	96.8	0.0	0.72	2.12	0.69	0.85	2.88	14915	1880	15	0	20	0	0	logfile
✔	6D05	7785	2021-06-03	2018-04-10	3.8	3.92	—	3.8	0.009	1.14	0.0	0.06	12.61	0.01	2.046	4.42	1.28	4.6	95.4	0.0	-3.29	0.86	0.82	1.80	3.8	0.004	0.66	0.0	0.04	14.66	0.00	1.879	8.86	0.16	4.5	95.5	0.0	0.57	2.81	0.88	0.85	1.68	28748	3572	10	0	26	0	0	logfile
✔	6D04	7784	2021-06-03	2018-04-10	3.74	3.86	—	3.8	0.008	1.08	2.0	0.06	11.62	0.01	2.001	4.27	1.21	4.6	95.4	0.0	-3.02	0.86	0.84	2.26	3.8	0.006	0.70	0.0	0.05	14.22	0.00	1.861	9.34	0.42	5.0	95.0	0.0	0.37	1.99	0.88	0.86	1.80	28748	3572	10	0	26	0	0	logfile
✔	6UP7	20836	2021-06-01	2019-10-16	4.2	4.33	—	4.2	0.008	1.08	0.0	0.06	10.29	0.01	2.216	9.58	0.00	13.2	86.8	0.0	-5.14	0.79	0.80	—	4.2	0.002	0.65	0.0	0.04	10.25	0.00	2.213	8.17	0.49	8.4	91.6	0.0	-0.98	1.24	0.78	0.78	—	4166	676	5	0	10	0	0	logfile
✔	6QYZ	4680	2021-06-01	2019-03-10	4.6	2.98	—	6.0	0.009	1.14	0.0	0.04	24.59	0.01	1.934	53.60	0.00	0.0	0.0	0.0	—	0.68	0.53	—	2.9	0.006	1.16	0.0	0.07	28.45	0.01	2.047	73.66	0.00	0.0	0.0	0.0	—	4.53	0.70	0.58	—	7300	0	5	345	0	0	0	logfile
✔	6XTB	10618	2021-06-01	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.19	0.0	0.05	9.82	0.01	2.083	13.22	0.00	33.8	66.2	0.0	-6.22	3.23	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	6DKF	7952	2021-06-02	2018-05-29	3.7	3.47	—	3.8	0.010	0.88	0.0	0.05	8.96	0.00	1.761	11.87	0.00	3.9	96.1	0.0	-5.10	0.73	0.76	2.82	3.7	0.003	0.72	0.0	0.04	16.78	0.00	2.105	13.09	0.89	2.8	97.2	0.0	0.39	2.33	0.73	0.79	1.65	17060	2314	14	0	0	0	0	logfile
✔	6VHL	21207	2021-06-01	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	13.68	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.8	0.004	0.76	0.0	0.04	16.72	0.00	2.284	7.88	0.75	11.3	88.7	0.0	-3.77	3.57	0.27	0.70	3.44	1190	158	4	0	0	0	0	logfile
✔	5oH0	3809	2021-06-01	2017-07-13	4.2	4.36	—	4.3	0.003	0.75	0.0	0.05	8.94	0.00	2.295	3.32	0.00	1.9	98.1	0.0	-3.74	0.64	0.84	—	4.2	0.004	0.57	0.0	0.04	11.06	0.00	2.197	6.26	0.00	6.0	94.0	0.0	-2.27	0.67	0.65	0.86	—	6588	942	6	0	0	0	0	logfile
✔	6T20	10364	2021-06-02	2019-10-07	3.7	3.40	3.60	3.6	0.019	1.70	5.0	0.09	12.08	0.01	1.317	5.75	0.00	4.4	95.6	0.0	-1.10	0.68	0.80	2.72	3.5	0.008	0.86	5.0	0.05	17.03	0.01	1.931	10.78	1.02	4.6	95.4	0.0	-0.13	2.40	0.69	0.82	2.03	14915	1880	15	0	20	0	0	logfile
✔	6DJP	7939	2021-06-01	2018-05-25	4.8	5.02	—	4.8	0.011	2.00	0.0	0.08	5.34	0.01	2.368	0.36	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.007	1.19	0.0	0.05	8.99	0.01	2.084	18.47	0.00	24.3	75.6	0.1	-4.33	1.36	0.82	0.77	—	7307	1393	8	0	23	0	0	logfile
✘	6T24	10366	2021-06-02	2019-10-07	3.7	3.44	3.63	3.6	0.019	1.73	0.0	0.09	12.41	0.01	1.162	2.67	0.00	0.5	99.5	0.0	0.74	0.68	0.80	2.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14910	1855	10	0	20	0	0	logfile
✔	6E3Y	8978	2021-06-01	2018-07-16	3.3	4.08	—	3.7	0.007	1.01	0.0	0.06	9.69	0.01	2.282	4.51	0.00	2.6	97.4	0.0	-3.02	0.78	0.81	2.06	3.6	0.003	0.73	0.0	0.04	14.23	0.01	2.138	11.43	0.20	2.6	97.4	0.0	0.28	1.38	0.80	0.84	1.74	9434	1194	7	0	1	0	0	logfile
✔	6PZ9	20528	2021-06-01	2019-07-31	3.65	3.90	—	3.9	0.009	1.21	0.0	0.07	12.25	0.01	2.205	3.43	0.00	6.9	93.1	0.0	-3.88	0.65	0.67	2.19	3.9	0.004	0.72	0.0	0.05	14.80	0.00	2.151	9.28	1.77	6.1	93.9	0.0	-0.21	1.56	0.69	0.72	0.55	7773	1196	3	0	2	0	0	logfile
✔	6oLK	20115	2021-06-03	2019-04-16	4.0	4.14	—	4.1	0.005	1.05	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.004	0.85	0.0	0.05	6.56	0.00	2.044	8.89	0.00	14.1	85.9	0.0	-1.97	1.52	0.63	0.60	—	10323	2094	6	0	0	0	0	logfile
✔	5GAQ	8015	2021-06-03	2016-01-05	3.1	3.36	—	3.2	0.006	1.01	0.0	0.08	11.97	0.00	2.289	1.94	0.80	7.3	92.7	0.0	-3.69	0.56	0.50	3.88	3.2	0.004	0.63	0.0	0.05	16.51	0.00	2.092	12.43	0.22	3.0	97.0	0.0	-1.69	2.18	0.80	0.85	3.59	20574	2592	9	0	0	0	0	logfile

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