Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6C3o	7338	2021-09-06	2018-01-10	3.9	3.58	—	3.6	0.006	0.92	0.0	0.05	10.43	0.00	1.661	15.20	0.32	7.4	92.6	0.0	-3.06	0.40	0.56	1.23	3.5	0.006	0.88	0.0	0.05	15.83	0.01	1.958	16.43	0.98	5.9	94.1	0.0	-0.18	3.06	0.65	0.73	1.42	49055	6472	16	0	23	0	0	logfile
✔	6M99	9050	2021-09-07	2018-08-23	3.4	3.37	—	3.3	0.007	0.97	0.0	0.06	10.05	0.01	2.186	6.86	0.38	5.8	94.2	0.0	-4.38	0.27	0.84	3.06	3.3	0.004	0.78	0.0	0.05	15.18	0.01	2.043	13.92	0.78	5.6	94.4	0.0	-0.50	0.73	0.28	0.86	2.31	101389	13152	14	0	2	0	0	logfile
✔	6G8Z	4362	2021-09-03	2018-04-10	3.66	3.88	3.72	3.8	0.005	0.77	0.0	0.04	8.70	0.00	2.362	0.22	0.00	3.8	96.2	0.0	-0.63	0.66	0.79	4.14	3.8	0.005	0.62	0.0	0.04	13.49	0.00	2.169	5.80	0.23	3.5	96.5	0.0	2.24	1.28	0.72	0.86	2.76	15966	1908	6	0	0	0	0	logfile
✘	5XNM	6742	2021-09-06	2017-05-23	3.2	3.28	—	3.3	0.010	1.40	0.0	0.07	15.91	0.02	1.205	9.85	0.03	2.3	97.7	0.0	-2.60	0.71	0.82	3.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92842	8712	90	0	486	0	0	logfile
✔	6E2R	8969	2021-09-05	2018-07-12	2.8	2.92	—	2.9	0.016	0.92	0.0	0.06	14.23	0.01	2.216	2.61	4.65	3.3	96.7	0.0	-3.68	0.72	0.85	5.02	2.9	0.003	0.62	0.0	0.04	14.99	0.00	2.115	3.40	1.09	2.5	97.5	0.0	-1.33	1.30	0.74	0.87	5.04	183180	11340	60	0	0	0	90180	logfile
✔	6o1V	0606	2021-09-03	2019-02-21	3.2	3.50	—	3.6	0.016	1.83	0.0	0.21	13.60	0.01	1.933	6.26	0.48	4.7	95.3	0.0	-2.71	0.46	0.70	3.04	3.6	0.003	0.71	0.0	0.07	16.34	0.00	1.988	7.94	0.19	2.1	97.9	0.0	0.73	0.77	0.60	0.83	2.58	9711	1179	3	0	28	0	0	logfile
✔	6CRQ	7568	2021-09-04	2018-03-19	4.2	3.69	4.20	4.1	0.014	1.45	1.0	0.08	11.39	0.01	1.839	7.14	1.06	2.3	97.7	0.0	1.77	0.68	0.76	—	3.6	0.008	0.93	1.0	0.05	13.58	0.01	2.047	13.86	0.00	7.2	92.8	0.0	-0.68	1.78	0.68	0.78	—	20271	2391	18	0	105	0	0	logfile
✔	6L7o	0849	2021-09-05	2019-11-02	3.2	3.37	—	3.5	0.076	1.23	0.0	1.05	14.00	0.00	1.354	23.56	0.00	5.3	94.7	0.0	-2.60	0.57	0.70	0.86	3.4	0.009	1.81	0.0	0.28	16.34	0.01	2.089	26.31	0.44	6.5	93.5	0.0	0.51	0.79	0.66	0.83	1.58	35037	4120	34	0	83	0	0	logfile
✔	6C14	7328	2021-09-03	2018-01-03	4.5	4.15	—	4.0	0.005	1.04	0.0	0.06	9.46	0.01	2.263	5.29	0.27	6.8	93.2	0.0	-4.44	0.55	0.70	—	4.0	0.005	0.82	0.0	0.05	12.11	0.01	2.092	22.47	0.27	5.2	94.8	0.0	-1.88	2.66	0.57	0.72	—	6746	860	4	0	0	0	0	logfile
✔	6CNN	7538	2021-09-03	2018-03-08	3.5	3.63	—	3.6	0.007	0.97	0.0	0.05	10.30	0.01	2.016	1.24	0.00	4.0	96.0	0.0	-4.29	0.66	0.83	2.52	3.6	0.005	0.65	0.0	0.04	15.33	0.00	2.147	5.33	0.33	2.9	97.1	0.0	1.92	0.75	0.67	0.84	1.86	15740	2024	16	0	28	0	0	logfile
✔	6o5B	0626	2021-09-03	2019-03-01	3.6	3.80	—	3.8	0.007	1.13	0.0	0.06	11.13	0.01	2.307	4.39	0.41	6.1	93.9	0.0	-4.21	0.63	0.79	2.85	3.7	0.006	0.80	0.0	0.05	15.08	0.01	2.166	9.45	0.62	6.8	93.2	0.0	-0.39	0.84	0.64	0.81	1.80	13169	1620	13	0	1	0	0	logfile
✔	6DRK	8901	2021-09-05	2018-06-12	3.8	4.29	—	4.2	0.010	1.18	4.0	0.07	9.74	0.01	2.150	5.77	0.36	5.9	94.1	0.0	-3.07	0.64	0.74	1.96	4.2	0.004	0.69	0.0	0.04	13.46	0.00	2.233	5.41	1.02	6.7	93.3	0.0	0.56	1.47	0.66	0.78	0.93	33120	5060	4	0	0	0	0	logfile
✔	5Z1W	6877	2021-09-03	2017-12-28	3.38	3.50	—	3.5	0.011	0.92	0.0	0.06	9.89	0.01	2.239	10.43	0.00	4.7	95.3	0.0	-3.34	0.65	0.84	4.86	3.5	0.003	0.61	0.0	0.04	14.47	0.00	2.119	6.98	0.28	2.7	97.3	0.0	1.65	0.74	0.68	0.86	3.14	13824	1716	8	0	12	0	0	logfile
✔	6S6V	10107	2021-09-03	2019-07-03	3.5	3.70	—	3.5	0.009	0.91	0.0	0.06	15.37	0.01	1.827	6.23	0.24	7.8	92.2	0.0	-3.61	0.86	0.86	2.78	3.5	0.002	0.56	0.0	0.04	16.09	0.00	1.816	8.22	0.24	4.4	95.6	0.0	-0.04	0.47	0.86	0.86	2.79	11820	1498	8	0	8	0	0	logfile
✔	6RJ9	4900	2021-09-03	2019-04-26	3.2	3.37	—	3.3	0.006	0.78	0.0	0.05	15.21	0.01	2.292	2.59	0.28	6.7	93.3	0.0	-3.87	0.67	0.86	2.60	3.3	0.003	0.57	0.0	0.04	16.27	0.00	2.220	5.27	0.09	3.8	96.2	0.0	-0.23	0.40	0.68	0.87	1.87	11874	1202	5	97	0	0	0	logfile
✔	6DRJ	7999	2021-09-05	2018-06-12	3.3	3.80	—	3.7	0.009	1.15	8.0	0.07	10.86	0.01	2.093	5.46	0.14	4.4	95.6	0.0	-3.18	0.67	0.79	1.95	3.7	0.004	0.63	0.0	0.04	14.13	0.00	2.151	4.86	0.49	3.6	96.4	0.0	0.10	1.24	0.70	0.83	1.74	35516	5064	8	0	8	0	0	logfile
✔	6oXL	20220	2021-09-03	2019-05-13	3.5	3.82	3.60	3.7	0.010	1.08	0.0	0.06	9.46	0.01	2.236	6.62	0.06	5.6	94.4	0.0	-5.46	0.81	0.84	3.05	3.7	0.006	0.85	0.0	0.04	13.56	0.00	2.170	9.86	0.13	3.2	96.8	0.0	-0.40	1.36	0.80	0.81	1.60	14413	1808	6	0	7	0	0	logfile
✔	6T72	10389	2021-09-04	2019-10-21	3.7	3.79	—	3.8	0.013	1.64	0.0	0.11	14.69	0.02	2.167	4.27	0.00	2.1	97.9	0.0	-2.53	0.76	0.87	2.40	3.7	0.004	0.60	0.0	0.04	15.01	0.00	2.077	3.64	0.26	3.2	96.8	0.0	1.38	1.25	0.78	0.88	1.84	26278	3388	14	0	210	0	0	logfile
✔	6RiU	4898	2021-09-02	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.66	0.0	0.03	16.44	0.00	2.076	12.47	0.66	3.9	96.1	0.0	-0.19	1.47	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	6VFX	21194	2021-09-05	2020-01-06	2.9	3.10	—	3.1	0.003	0.60	0.0	0.04	10.55	0.00	2.112	2.07	0.10	3.6	96.4	0.0	-1.34	0.59	0.59	2.34	3.1	0.004	0.63	0.0	0.04	16.90	0.00	1.840	8.42	2.16	4.2	95.8	0.0	0.08	1.61	0.70	0.80	2.35	73348	4682	27	0	18	0	36896	logfile

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