Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JZH	22531	2022-07-04	2020-09-02	3.59	3.46	—	3.5	0.006	0.96	4.0	0.06	20.55	0.01	2.095	16.88	16.34	8.7	91.3	0.0	-3.42	0.56	0.73	1.23	3.6	0.009	1.07	0.0	0.04	19.38	0.01	1.637	11.76	0.14	4.4	95.6	0.0	-0.30	1.63	0.59	0.73	1.10	20328	2562	6	0	0	0	0	logfile
✔	7JZ3	22529	2022-07-03	2020-09-01	2.56	2.99	—	3.0	0.003	0.62	0.0	0.05	13.64	0.00	2.211	10.63	1.09	5.8	94.2	0.0	-2.54	0.51	0.62	2.00	2.9	0.008	0.98	0.0	0.05	16.95	0.01	2.004	19.02	6.55	9.6	90.4	0.0	-2.34	1.64	0.47	0.65	1.40	8142	1038	3	0	0	0	0	logfile
✔	7BBH	12130	2022-07-05	2020-12-17	2.9	3.12	3.00	3.1	0.005	0.71	0.0	0.05	12.20	0.01	2.270	3.32	0.86	3.9	96.1	0.0	-0.97	0.78	0.83	3.43	3.1	0.003	0.60	0.0	0.04	15.37	0.00	2.164	3.67	1.69	3.5	96.5	0.0	-0.08	4.35	0.78	0.84	3.00	25827	3189	18	0	69	0	0	logfile
✔	6WVT	21925	2022-07-05	2020-05-06	3.56	3.74	—	3.7	0.007	0.96	0.0	0.05	17.66	0.01	2.106	6.53	5.29	3.8	96.2	0.0	-3.51	0.73	0.83	2.25	3.7	0.003	0.68	0.0	0.04	17.47	0.00	1.997	10.73	0.73	3.4	96.6	0.0	0.02	1.14	0.73	0.84	2.02	25248	3240	18	0	12	0	0	logfile
✔	6RBG	4798	2022-07-04	2019-04-10	3.0	3.55	—	3.4	0.004	0.89	0.0	0.05	14.50	0.00	2.407	3.44	0.38	2.0	98.0	0.0	-6.39	0.67	0.80	3.37	3.4	0.002	0.63	0.0	0.04	17.29	0.00	2.160	4.94	1.24	1.3	98.7	0.0	0.69	0.57	0.70	0.83	2.57	19336	2464	8	0	0	0	0	logfile
✔	7KDP	22828	2022-07-04	2020-10-09	3.6	3.84	—	3.8	0.004	0.72	0.0	0.05	13.97	0.00	2.184	12.06	0.12	13.8	86.2	0.0	-2.89	0.71	0.81	2.28	3.8	0.004	0.73	0.0	0.05	15.79	0.01	2.142	8.56	0.59	13.0	87.0	0.0	-2.35	3.11	0.71	0.81	2.03	15844	1914	6	0	34	0	0	logfile
✔	6ZY9	11555	2022-07-04	2020-07-30	3.3	3.42	—	3.5	0.004	0.81	0.0	0.05	12.79	0.01	2.174	2.48	0.25	4.7	95.3	0.0	-5.76	0.62	0.71	1.14	3.4	0.006	0.88	0.0	0.04	15.32	0.01	2.039	6.85	0.13	4.3	95.7	0.0	-1.34	0.68	0.65	0.80	1.00	14973	1985	14	0	4	0	0	logfile
✔	6ZY3	11548	2022-07-04	2020-07-30	3.3	3.38	—	3.4	0.003	0.70	0.0	0.04	12.97	0.00	2.332	3.18	0.18	4.8	95.2	0.0	-5.92	0.66	0.74	1.69	3.3	0.006	0.83	0.0	0.04	15.06	0.00	1.607	6.92	0.06	5.0	95.0	0.0	-1.47	0.62	0.70	0.82	1.78	15770	2071	12	0	1	0	0	logfile
✘	6XFA	22168	2022-07-06	2020-06-15	3.6	3.70	—	3.6	0.006	0.66	0.0	0.05	14.34	0.00	2.205	6.16	0.57	8.0	92.0	0.0	-3.71	0.81	0.85	2.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31730	4060	20	0	20	0	0	logfile
✔	6LYG	30016	2022-07-04	2020-02-14	3.1	3.32	—	3.3	0.003	0.57	0.0	0.04	14.35	0.00	2.299	8.29	0.00	1.7	98.3	0.0	-0.02	0.54	0.76	2.03	3.3	0.005	0.62	0.0	0.04	16.20	0.01	2.232	5.30	0.00	1.3	98.7	0.0	3.20	0.78	0.65	0.86	1.86	14688	1856	16	0	8	0	0	logfile
✔	6Z85	11114	2022-07-07	2020-06-02	2.9	3.09	—	3.1	0.009	1.05	0.0	0.06	9.34	0.01	2.301	3.75	0.49	3.1	96.9	0.0	-4.47	0.62	0.69	2.50	3.1	0.004	0.65	0.0	0.04	14.78	0.00	2.264	8.42	1.94	2.1	97.9	0.0	0.86	0.56	0.60	0.73	2.09	18880	2360	30	0	20	0	0	logfile
✔	7K3A	22654	2022-07-05	2020-09-10	4.2	4.49	—	4.2	0.004	0.73	0.0	0.05	12.62	0.00	2.053	13.29	0.17	5.1	94.9	0.0	-0.62	0.85	0.73	—	4.2	0.004	0.70	0.0	0.05	12.72	0.00	2.148	19.29	0.00	5.1	94.9	0.0	-0.69	2.08	0.91	0.83	—	21426	2691	27	0	54	0	0	logfile
✔	7AHo	11789	2022-07-03	2020-09-25	4.18	3.69	—	3.9	0.006	0.92	0.0	0.06	15.60	0.01	2.254	7.03	0.21	4.6	95.4	0.0	-5.45	0.72	0.77	—	3.9	0.008	0.97	0.0	0.05	15.25	0.01	1.968	15.62	0.07	4.5	95.5	0.0	-2.21	0.77	0.72	0.77	—	13521	1748	9	0	3	0	0	logfile
✔	7DK6	30704	2022-07-06	2020-11-23	4.3	3.67	—	3.5	0.003	0.54	0.0	0.04	7.79	0.00	2.096	1.26	0.06	3.0	97.0	0.0	-3.17	0.59	0.45	—	3.5	0.005	0.88	1.0	0.05	12.18	0.01	2.051	17.99	0.00	6.1	93.9	0.0	-1.33	1.81	0.73	0.64	—	31448	4042	7	0	0	0	0	logfile
✔	7CZB	30508	2022-07-03	2020-09-07	3.8	4.14	—	4.1	0.005	1.12	0.0	0.06	15.72	0.01	2.360	4.78	0.47	12.5	87.5	0.0	-4.95	0.56	0.80	2.30	4.1	0.003	0.91	0.0	0.05	17.03	0.00	2.245	11.15	0.94	10.8	89.2	0.0	-1.60	1.39	0.56	0.80	1.78	6304	776	4	0	0	0	0	logfile
✔	6PXD	20518	2022-07-04	2019-07-25	2.9	2.99	—	3.3	0.007	1.04	0.0	0.06	10.49	0.01	2.154	11.39	1.32	4.7	95.3	0.0	-3.03	0.64	0.82	4.45	3.2	0.012	1.26	4.0	0.05	14.56	0.01	1.948	11.65	1.92	3.7	96.3	0.0	-0.84	0.61	0.66	0.84	4.38	13899	1700	13	0	13	1	0	logfile
✔	6XJB	22205	2022-07-03	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.15	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.005	0.69	0.0	0.04	15.37	0.00	2.075	14.28	0.46	8.2	91.8	0.0	-1.64	1.83	0.88	0.86	2.01	10070	1277	1	0	0	0	0	logfile
✔	7K5K	22682	2022-07-05	2020-09-17	2.66	2.76	2.81	2.7	0.007	0.69	0.0	0.05	15.27	0.00	1.722	7.12	4.06	10.2	89.7	0.0	-3.21	0.79	0.85	4.74	2.7	0.003	0.56	0.0	0.04	15.70	0.00	2.037	7.10	2.62	6.8	93.2	0.0	-0.80	0.33	0.80	0.86	3.95	24224	3270	12	0	18	0	0	logfile
✔	6YKR	10830	2022-07-03	2020-04-06	3.0	3.10	2.86	3.1	0.004	0.84	0.0	0.05	9.41	0.01	2.314	2.33	0.00	2.6	97.4	0.0	-6.35	0.66	0.85	5.11	3.1	0.003	0.67	0.0	0.04	16.26	0.00	2.265	7.76	0.93	2.4	97.6	0.0	1.12	0.80	0.69	0.88	3.46	10189	1326	9	0	0	6	0	logfile
✔	7AQC	11862	2022-07-06	2020-10-21	2.99	2.20	—	2.5	0.004	0.83	0.0	0.05	16.62	0.01	1.862	5.15	0.13	5.4	94.6	0.0	-1.91	0.83	0.80	2.39	2.5	0.006	0.75	0.0	0.04	17.25	0.01	1.801	9.40	2.16	6.0	94.0	0.0	-0.68	0.48	0.85	0.83	2.79	95378	3752	34	3077	0	0	0	logfile

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