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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6WUT | 21918 | 2022-12-11 | 2020-05-05 | 3.0 | 3.08 | — | 3.1 | 0.008 | 0.89 | 0.0 | 0.05 | 13.93 | 0.01 | 2.253 | 3.66 | 5.79 | 6.2 | 93.8 | 0.0 | -4.07 | 0.70 | 0.82 | 3.81 | 3.1 | 0.002 | 0.59 | 0.0 | 0.04 | 15.60 | 0.00 | 2.189 | 5.60 | 3.90 | 3.8 | 96.2 | 0.0 | 0.05 | 4.28 | 0.68 | 0.83 | 3.26 | 8218 | 1087 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LXD | 30005 | 2022-12-13 | 2020-02-10 | 3.9 | 3.67 | — | 3.5 | 0.002 | 0.55 | 0.0 | 0.04 | 13.46 | 0.00 | 2.239 | 15.47 | 0.70 | 9.3 | 90.7 | 0.0 | -3.27 | 0.87 | 0.79 | 0.87 | 3.5 | 0.003 | 0.76 | 0.0 | 0.04 | 15.19 | 0.00 | 2.137 | 17.74 | 0.12 | 9.0 | 91.0 | 0.0 | -1.58 | 0.67 | 0.88 | 0.79 | 0.94 | 9435 | 963 | 5 | 72 | 2 | 0 | 0 | logfile |
✔ | 6WVM | 21923 | 2022-12-15 | 2020-05-06 | 3.3 | 3.76 | 3.18 | 3.8 | 0.013 | 1.96 | 6.0 | 0.10 | 16.19 | 0.02 | 1.972 | 1.00 | 0.55 | 1.9 | 98.1 | 0.0 | -1.87 | 0.45 | 0.49 | 0.63 | 3.6 | 0.004 | 0.67 | 0.0 | 0.04 | 17.19 | 0.00 | 1.716 | 12.71 | 0.34 | 2.8 | 97.2 | 0.0 | -0.40 | 2.54 | 0.54 | 0.78 | 2.34 | 26744 | 1712 | 8 | 2 | 6 | 0 | 13046 | logfile |
✔ | 6WVL | 21922 | 2022-12-15 | 2020-05-06 | 3.2 | 3.69 | 3.05 | 3.8 | 0.013 | 1.98 | 5.0 | 0.10 | 16.20 | 0.02 | 1.944 | 0.89 | 0.41 | 1.8 | 98.2 | 0.0 | -1.96 | 0.44 | 0.48 | 0.43 | 3.6 | 0.004 | 0.65 | 0.0 | 0.04 | 17.09 | 0.00 | 1.790 | 12.16 | 0.34 | 2.5 | 97.5 | 0.0 | -0.04 | 2.51 | 0.51 | 0.77 | 2.46 | 26744 | 1712 | 8 | 2 | 6 | 0 | 13046 | logfile |
✔ | 6Y5H | 10697 | 2022-12-12 | 2020-02-25 | 3.0 | 3.10 | 3.04 | 3.1 | 0.002 | 0.56 | 0.0 | 0.07 | 14.94 | 0.01 | 2.238 | 3.19 | 0.70 | 4.1 | 95.9 | 0.0 | -2.50 | 0.53 | 0.56 | 0.43 | 3.1 | 0.003 | 0.55 | 0.0 | 0.04 | 17.13 | 0.00 | 2.171 | 4.21 | 3.59 | 1.7 | 98.3 | 0.0 | -0.28 | 1.11 | 0.74 | 0.86 | 3.44 | 11994 | 1470 | 18 | 0 | 33 | 0 | 0 | logfile |
✔ | 6Y5G | 10696 | 2022-12-12 | 2020-02-25 | 3.0 | 3.07 | 3.02 | 3.0 | 0.005 | 0.56 | 0.0 | 0.10 | 14.04 | 0.00 | 2.189 | 4.07 | 0.94 | 4.6 | 95.4 | 0.0 | -2.94 | 0.73 | 0.84 | 4.03 | 3.0 | 0.004 | 0.66 | 0.0 | 0.05 | 16.38 | 0.00 | 2.213 | 3.60 | 2.34 | 4.4 | 95.6 | 0.0 | -0.76 | 1.18 | 0.74 | 0.86 | 4.08 | 12036 | 1470 | 18 | 0 | 36 | 0 | 0 | logfile |
✔ | 7BZ2 | 30249 | 2022-12-11 | 2020-04-26 | 3.82 | 3.99 | — | 3.9 | 0.004 | 0.68 | 0.0 | 0.05 | 14.75 | 0.00 | 2.101 | 12.42 | 0.00 | 10.2 | 89.8 | 0.0 | -6.04 | 0.73 | 0.79 | 2.10 | 3.9 | 0.002 | 0.64 | 0.0 | 0.04 | 16.48 | 0.00 | 2.125 | 8.60 | 0.68 | 4.1 | 95.9 | 0.0 | -2.49 | 1.58 | 0.72 | 0.78 | 1.16 | 7393 | 978 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XYE | 10649 | 2022-12-12 | 2020-01-30 | 4.3 | 4.37 | 4.28 | 4.3 | 0.010 | 1.29 | 0.0 | 0.09 | 10.03 | 0.01 | 2.315 | 11.42 | 0.00 | 4.7 | 95.3 | 0.0 | -3.09 | 0.71 | 0.69 | — | 4.3 | 0.003 | 0.75 | 0.0 | 0.05 | 12.45 | 0.00 | 2.159 | 14.59 | 0.00 | 8.0 | 92.0 | 0.0 | -1.37 | 1.39 | 0.72 | 0.69 | — | 9834 | 1293 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SLU | 10240 | 2022-12-12 | 2019-08-20 | 4.7 | 4.88 | 4.61 | 4.8 | 0.004 | 0.64 | 0.0 | 0.04 | 9.23 | 0.00 | 1.454 | 9.92 | 0.18 | 1.3 | 98.7 | 0.0 | -1.03 | 0.69 | 0.77 | — | 4.7 | 0.004 | 0.87 | 0.0 | 0.05 | 13.27 | 0.01 | 2.140 | 20.43 | 0.00 | 3.9 | 96.1 | 0.0 | -0.08 | 1.29 | 0.73 | 0.81 | — | 10336 | 1320 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RFD | 4863 | 2022-12-13 | 2019-04-12 | 3.9 | 4.01 | — | 3.9 | 0.006 | 0.83 | 0.0 | 0.05 | 11.19 | 0.01 | 2.077 | 3.50 | 0.00 | 4.4 | 95.6 | 0.0 | -4.54 | 0.86 | 0.87 | 3.34 | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 15.16 | 0.00 | 1.948 | 11.98 | 0.26 | 3.7 | 96.3 | 0.0 | -0.21 | 2.13 | 0.86 | 0.87 | 2.76 | 14407 | 1821 | 9 | 2 | 4 | 0 | 0 | logfile |
✔ | 7C8D | 30305 | 2022-12-12 | 2020-05-29 | 3.0 | 2.79 | — | 2.8 | 0.003 | 0.53 | 0.0 | 0.04 | 17.37 | 0.00 | 1.998 | 9.11 | 6.05 | 3.6 | 96.4 | 0.0 | -2.80 | 0.71 | 0.76 | 3.07 | 2.8 | 0.002 | 0.67 | 0.0 | 0.04 | 17.96 | 0.00 | 2.097 | 10.56 | 3.98 | 4.8 | 95.2 | 0.0 | 0.05 | 1.10 | 0.72 | 0.78 | 2.36 | 6359 | 792 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6SKK | 10226 | 2022-12-12 | 2019-08-15 | 3.6 | 3.76 | 3.63 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 12.96 | 0.00 | 2.319 | 7.69 | 0.18 | 1.7 | 98.3 | 0.0 | -1.14 | 0.70 | 0.75 | 1.70 | 3.7 | 0.003 | 0.71 | 0.0 | 0.04 | 16.81 | 0.00 | 2.126 | 12.68 | 0.27 | 2.7 | 97.3 | 0.0 | 0.81 | 0.73 | 0.71 | 0.77 | 1.58 | 10328 | 1320 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LN8 | 0927 | 2022-12-11 | 2019-12-28 | 3.1 | 3.26 | 3.33 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 12.81 | 0.00 | 2.051 | 6.74 | 0.00 | 3.0 | 97.0 | 0.0 | -2.71 | 0.70 | 0.80 | 2.37 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 15.04 | 0.00 | 1.382 | 9.05 | 0.00 | 3.1 | 96.9 | 0.0 | 0.12 | 0.47 | 0.69 | 0.82 | 1.72 | 7739 | 1003 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6VRC | 21367 | 2022-12-12 | 2020-02-07 | 3.2 | 3.32 | — | 3.3 | 0.010 | 1.27 | 2.0 | 0.08 | 15.90 | 0.01 | 2.170 | 11.64 | 3.70 | 7.7 | 92.3 | 0.0 | -4.83 | 0.79 | 0.82 | 2.87 | 3.3 | 0.002 | 0.63 | 0.0 | 0.04 | 16.94 | 0.00 | 2.168 | 5.87 | 0.42 | 5.4 | 94.6 | 0.0 | -0.42 | 0.89 | 0.80 | 0.86 | 2.18 | 9429 | 1007 | 2 | 51 | 0 | 0 | 0 | logfile |
✔ | 6LLY | 0915 | 2022-12-11 | 2019-12-24 | 2.8 | 2.92 | 2.72 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 12.24 | 0.00 | 2.043 | 6.26 | 0.12 | 3.1 | 96.9 | 0.0 | -4.03 | 0.66 | 0.79 | 2.62 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 15.47 | 0.00 | 1.330 | 8.18 | 1.16 | 2.9 | 97.1 | 0.0 | 0.06 | 0.49 | 0.64 | 0.80 | 1.86 | 7774 | 1006 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 6UZV | 20963 | 2022-12-19 | 2019-11-15 | 3.1 | 3.13 | — | 3.2 | 0.010 | 1.18 | 0.0 | 0.06 | 20.36 | 0.04 | 1.217 | 11.55 | 0.89 | 4.2 | 95.8 | 0.0 | -1.85 | 0.71 | 0.84 | 3.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72606 | 6711 | 60 | 0 | 408 | 0 | 0 | logfile |
✔ | 6LN9 | 0928 | 2022-12-11 | 2019-12-28 | 3.4 | 3.61 | 3.06 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 12.32 | 0.00 | 2.075 | 7.70 | 0.00 | 4.1 | 95.9 | 0.0 | -3.36 | 0.63 | 0.73 | 1.41 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 14.86 | 0.00 | 1.358 | 10.76 | 0.24 | 4.5 | 95.5 | 0.0 | -0.23 | 0.53 | 0.62 | 0.75 | 1.21 | 7612 | 987 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6LN6 | 0925 | 2022-12-11 | 2019-12-28 | 2.9 | 3.03 | 2.87 | 3.0 | 0.005 | 0.64 | 0.0 | 0.04 | 11.98 | 0.00 | 2.035 | 6.60 | 0.00 | 2.0 | 98.0 | 0.0 | -3.94 | 0.65 | 0.82 | 3.55 | 3.0 | 0.005 | 0.62 | 0.0 | 0.05 | 15.68 | 0.00 | 2.030 | 7.36 | 1.62 | 2.2 | 97.8 | 0.0 | 0.18 | 1.33 | 0.66 | 0.84 | 3.42 | 7836 | 1010 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 6LN5 | 0924 | 2022-12-11 | 2019-12-28 | 2.8 | 2.93 | 2.78 | 2.9 | 0.005 | 0.63 | 0.0 | 0.04 | 12.32 | 0.00 | 2.027 | 5.39 | 0.12 | 2.0 | 98.0 | 0.0 | -4.16 | 0.68 | 0.83 | 3.56 | 2.9 | 0.003 | 0.54 | 0.0 | 0.04 | 16.36 | 0.00 | 2.241 | 5.96 | 1.85 | 1.4 | 98.6 | 0.0 | 0.67 | 1.33 | 0.68 | 0.85 | 2.78 | 7840 | 1011 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 6VJY | 21220 | 2022-12-11 | 2020-01-18 | 4.3 | 4.47 | — | 4.3 | 0.003 | 0.64 | 0.0 | 0.04 | 14.40 | 0.00 | 2.223 | 12.44 | 0.13 | 4.1 | 95.9 | 0.0 | -1.62 | 0.70 | 0.81 | — | 4.3 | 0.004 | 0.72 | 0.0 | 0.04 | 14.35 | 0.00 | 2.135 | 11.61 | 0.00 | 4.9 | 95.1 | 0.0 | 1.69 | 0.86 | 0.70 | 0.81 | — | 7266 | 883 | 2 | 0 | 0 | 0 | 0 | logfile |