Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oQY	13034	2023-11-19	2021-06-04	2.61	2.96	2.55	2.9	0.020	0.88	0.0	0.20	13.68	0.00	1.842	4.99	0.00	2.9	97.1	0.0	-0.33	0.67	0.82	3.68	2.9	0.005	0.81	0.0	0.05	16.31	0.00	1.531	4.92	1.06	3.0	97.0	0.0	-0.38	0.30	0.66	0.84	3.47	28032	3535	20	0	10	0	0	logfile
✔	8A2U	15107	2023-11-16	2022-06-06	2.21	2.31	2.16	2.3	0.004	0.63	0.0	0.04	13.27	0.00	2.173	2.75	0.65	2.5	97.5	0.0	-1.41	0.72	0.86	6.31	2.3	0.002	0.59	0.0	0.04	16.64	0.00	2.155	3.93	0.52	1.3	98.7	0.0	1.13	1.06	0.73	0.88	6.00	15022	1830	15	0	15	512	0	logfile
✔	7LG5	23311	2023-11-19	2021-01-19	2.63	3.69	2.85	3.3	0.018	1.83	4.0	0.10	10.29	0.01	1.766	1.08	0.00	3.9	96.1	0.0	-0.64	0.90	0.88	3.10	3.3	0.006	0.71	0.0	0.05	12.41	0.00	1.913	5.58	0.81	5.3	94.7	0.0	-0.22	0.69	0.88	0.88	3.04	26888	3484	8	0	20	0	0	logfile
✔	7oK0	12960	2023-11-19	2021-05-17	2.9	3.35	2.78	3.2	0.021	0.93	0.0	0.22	12.91	0.00	2.038	5.46	0.00	3.7	96.3	0.0	0.12	0.78	0.85	3.19	3.2	0.006	0.81	0.0	0.05	15.28	0.00	1.778	6.64	1.17	4.5	95.5	0.0	0.01	0.31	0.78	0.87	3.09	25636	3234	18	0	8	0	0	logfile
✔	7D60	30586	2023-11-19	2020-09-28	2.61	2.73	—	2.7	0.006	0.89	0.0	0.05	16.89	0.01	2.395	1.56	0.00	2.1	97.9	0.0	-6.95	0.70	0.83	2.76	2.7	0.002	0.60	0.0	0.04	17.99	0.00	2.197	3.56	2.04	2.2	97.8	0.0	1.03	0.53	0.69	0.84	2.00	26664	3168	22	0	55	0	0	logfile
✔	8CX1	27033	2023-11-16	2022-05-19	3.3	4.00	3.27	2.9	0.004	0.65	0.0	0.04	14.56	0.00	2.244	4.34	0.06	2.7	97.3	0.0	0.14	0.79	0.65	2.34	3.0	0.006	0.73	0.0	0.04	16.15	0.00	2.054	15.37	0.44	4.2	95.8	0.0	0.55	2.80	0.87	0.82	1.92	15184	1781	16	16	6	0	0	logfile
✔	7oCi	12808	2023-11-16	2021-04-27	3.46	3.63	—	3.6	0.006	1.26	0.0	0.59	14.98	0.01	2.155	6.07	0.00	2.8	97.2	0.0	-2.61	0.65	0.87	3.56	3.6	0.003	1.17	0.0	0.10	15.43	0.00	2.083	4.82	0.57	2.9	97.1	0.0	-0.78	0.36	0.64	0.89	3.18	17077	2071	18	0	46	0	0	logfile
✔	8EiZ	28167	2023-11-19	2022-09-15	3.13	3.35	3.19	3.3	0.007	0.77	0.0	0.05	15.79	0.01	1.963	8.74	0.00	4.2	95.8	0.0	-0.51	0.68	0.82	3.46	3.3	0.003	0.51	0.0	0.04	16.23	0.00	1.964	6.23	0.34	3.7	96.3	0.0	-0.22	0.45	0.70	0.84	3.65	26100	1575	20	0	20	10	12825	logfile
✔	8DM1	27523	2023-11-18	2022-07-08	3.04	3.80	3.09	3.5	0.005	0.84	0.0	0.06	13.27	0.01	2.305	3.36	0.54	1.7	98.3	0.0	0.41	0.78	0.75	1.04	3.5	0.003	0.60	0.0	0.04	15.17	0.00	2.192	9.40	0.25	2.0	98.0	0.0	0.86	1.29	0.82	0.84	2.24	22276	2751	24	0	55	0	0	logfile
✔	7TFH	25872	2023-11-18	2022-01-06	3.09	2.46	—	3.2	0.003	0.56	0.0	0.04	15.93	0.00	2.066	7.61	0.04	2.9	97.1	0.0	0.09	0.82	0.79	2.41	3.2	0.003	0.54	0.0	0.04	17.35	0.00	1.967	8.84	0.12	3.0	97.0	0.0	0.61	1.69	0.84	0.84	2.21	22831	2717	17	63	9	0	0	logfile
✔	8DM6	27528	2023-11-14	2022-07-08	2.77	3.36	2.83	3.3	0.006	0.94	0.0	0.06	14.09	0.01	2.282	3.28	0.57	1.6	98.4	0.0	-0.08	0.77	0.83	2.73	3.2	0.004	0.68	0.0	0.04	16.78	0.00	2.208	9.05	1.72	2.3	97.7	0.0	1.39	1.60	0.76	0.83	2.82	6559	796	4	0	7	0	0	logfile
✘	7MJM	23878	2023-11-21	2021-04-20	2.83	3.74	—	3.0	0.004	0.78	0.0	0.05	13.63	0.01	2.285	2.96	0.00	2.7	97.3	0.0	-0.95	0.83	0.79	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35096	4312	28	0	68	0	0	logfile
✔	8A2T	15106	2023-11-16	2022-06-06	2.24	2.35	2.17	2.3	0.004	0.56	0.0	0.04	13.20	0.00	1.880	2.50	0.32	1.9	98.1	0.0	-1.62	0.71	0.87	5.89	2.3	0.003	0.61	0.0	0.04	16.32	0.00	1.898	3.79	0.52	1.1	98.9	0.0	1.10	0.81	0.74	0.90	5.29	15046	1830	15	0	10	556	0	logfile
✔	7MXE	24072	2023-11-19	2021-05-19	3.7	3.77	1.71	3.7	0.005	0.77	0.0	0.05	11.42	0.00	1.698	4.31	0.35	3.4	96.6	0.0	-3.38	0.73	0.85	2.71	3.7	0.004	0.69	0.0	0.05	14.56	0.00	2.125	5.25	0.40	6.0	94.0	0.0	-1.34	0.61	0.76	0.90	2.76	22149	2632	51	0	128	0	0	logfile
✔	7E9P	31035	2023-11-13	2021-03-04	3.69	4.11	—	4.0	0.005	0.78	0.0	0.05	13.87	0.00	2.218	11.34	0.00	7.5	92.5	0.0	-2.51	0.74	0.81	2.88	4.0	0.003	0.68	0.0	0.04	15.16	0.00	2.116	11.97	0.92	5.6	94.4	0.0	-1.69	1.19	0.74	0.81	2.35	4898	639	4	0	1	0	0	logfile
✔	6YLX	10841	2023-11-16	2020-04-07	3.9	3.78	3.86	3.8	0.019	1.57	1.0	0.08	17.82	0.01	1.989	6.50	0.65	3.4	96.6	0.0	-3.91	0.81	0.81	1.40	3.7	0.004	0.76	0.0	0.04	17.43	0.01	2.077	18.35	0.75	8.3	91.6	0.1	-1.54	0.68	0.82	0.83	1.16	118882	7493	47	2757	0	0	0	logfile
✘	6SWE	10324	2023-11-18	2019-09-20	3.1	3.79	3.08	3.3	0.012	0.98	0.0	0.05	16.06	0.02	1.948	7.44	1.17	12.0	88.0	0.0	-4.83	0.87	0.84	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22737	1523	21	486	9	18	0	logfile
✔	8E4C	27888	2023-11-13	2022-08-18	4.0	3.22	3.15	3.1	0.005	0.84	2.0	0.07	16.48	0.01	2.251	7.49	1.84	6.1	93.9	0.0	-0.24	0.48	0.49	—	3.1	0.004	0.80	0.0	0.05	17.38	0.01	2.102	17.02	1.27	6.6	93.4	0.0	-0.69	1.33	0.48	0.49	—	6398	805	6	0	5	0	0	logfile
✘	7MBV	23748	2023-11-20	2021-04-01	2.8	3.34	—	3.0	0.003	0.59	0.0	0.04	12.63	0.01	2.280	6.88	0.00	2.3	97.7	0.0	1.48	0.77	0.82	3.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30804	3984	8	0	24	0	0	logfile
✔	6Uo9	20823	2023-11-14	2019-10-14	4.8	5.30	—	4.9	0.006	1.38	1.0	0.07	13.53	0.01	2.227	6.41	1.07	8.0	92.0	0.0	-3.80	0.81	0.80	—	4.9	0.003	0.76	0.0	0.04	13.05	0.00	2.201	12.12	0.00	6.6	93.4	0.0	-0.21	1.36	0.81	0.81	—	9915	1365	9	0	14	0	0	logfile

• ← previous
• Page 2 of 528
• next →