Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Uo9	20823	2022-05-13	2019-10-14	4.8	5.30	—	4.9	0.006	1.36	1.0	0.07	13.42	0.01	2.227	6.52	1.07	8.0	92.0	0.0	-3.80	0.81	0.80	—	4.8	0.003	0.74	0.0	0.05	13.06	0.00	2.210	11.31	0.00	6.5	93.5	0.0	-0.29	0.62	0.81	0.81	—	9915	1365	9	0	14	0	0	logfile
✔	6WLB	21820	2022-05-16	2020-04-19	3.5	3.89	—	3.8	0.004	0.56	0.0	0.06	13.08	0.00	2.123	6.89	0.16	4.2	95.8	0.0	1.33	0.66	0.78	1.05	3.8	0.003	0.57	0.0	0.06	14.48	0.01	2.021	7.18	0.21	5.5	94.5	0.0	1.30	1.20	0.64	0.79	1.68	34441	2160	6	0	15	0	16960	logfile
✔	6Uo8	20822	2022-05-13	2019-10-14	3.63	3.97	—	3.8	0.004	0.73	0.0	0.05	13.47	0.01	2.290	4.07	0.00	7.8	92.2	0.0	-3.75	0.76	0.83	2.87	3.8	0.004	0.68	0.0	0.05	15.37	0.00	2.208	8.32	0.27	7.3	92.7	0.0	-0.93	1.26	0.77	0.83	2.85	10958	1385	7	0	15	0	0	logfile
✔	6SKi	10225	2022-05-12	2019-08-15	2.6	2.97	2.57	2.9	0.004	0.72	0.0	0.04	16.20	0.00	2.210	8.64	1.29	1.6	98.4	0.0	-0.80	0.63	0.83	4.83	2.9	0.003	0.55	0.0	0.04	16.67	0.00	2.267	7.50	1.94	3.1	96.9	0.0	0.90	0.51	0.63	0.84	4.48	4434	569	2	0	0	0	0	logfile
✔	6LMT	0919	2022-05-14	2019-12-26	2.66	2.77	2.50	2.7	0.012	1.14	0.0	0.06	11.63	0.01	2.409	4.14	0.00	2.4	97.6	0.0	-4.48	0.52	0.75	5.03	2.7	0.003	0.67	0.0	0.04	16.17	0.00	2.262	10.09	1.45	1.6	98.4	0.0	2.29	0.56	0.70	0.88	3.49	17552	2032	16	0	32	0	0	logfile
✔	6KQo	0754	2022-05-13	2019-08-18	2.52	3.75	—	3.2	0.019	1.14	0.0	0.07	15.24	0.00	1.883	10.69	0.03	9.4	90.6	0.0	-5.07	0.87	0.85	3.52	3.3	0.005	0.77	1.0	0.12	15.95	0.00	1.796	9.28	0.84	3.7	96.3	0.0	0.25	1.66	0.85	0.85	3.16	63373	3936	24	0	48	0	31225	logfile
✔	6TU3	10586	2022-05-18	2020-01-02	2.7	2.82	2.74	2.8	0.006	0.81	0.0	0.05	16.10	0.01	1.264	9.35	8.29	5.8	94.2	0.0	-2.57	0.76	0.83	2.83	2.8	0.006	0.78	0.0	0.05	17.67	0.01	2.068	7.13	5.59	4.9	95.1	0.0	-0.38	0.57	0.77	0.85	2.79	47002	6158	28	0	0	0	0	logfile
✔	6ZoW	11328	2022-05-15	2020-07-07	3.0	3.81	3.10	3.4	0.006	0.71	0.0	0.05	13.52	0.01	1.991	12.34	0.52	2.9	97.1	0.0	-0.91	0.79	0.75	2.92	3.4	0.008	0.95	0.0	0.05	14.94	0.00	1.581	13.35	1.79	3.8	96.2	0.0	-0.11	0.50	0.85	0.86	2.32	23534	2862	35	0	92	4	0	logfile
✔	6WNR	21855	2022-05-17	2020-04-23	3.3	3.61	—	3.4	0.005	0.96	1.0	0.06	14.34	0.01	1.869	2.24	1.44	2.8	97.2	0.0	-1.29	0.77	0.85	2.75	3.4	0.003	0.72	0.0	0.04	15.71	0.00	1.932	9.30	0.16	3.1	96.9	0.0	0.76	0.79	0.79	0.88	2.10	36934	4851	28	0	12	0	0	logfile
✔	6PQV	20454	2022-05-17	2019-07-10	3.3	3.54	—	3.4	0.009	0.93	1.0	0.05	14.70	0.00	1.757	4.51	2.58	3.6	96.3	0.0	-2.75	0.75	0.86	3.27	3.4	0.003	0.69	0.0	0.04	15.86	0.00	1.963	8.90	0.39	2.4	97.6	0.0	0.52	1.29	0.77	0.88	2.55	36971	4851	28	0	12	0	0	logfile
✔	6oQR	20167	2022-05-17	2019-04-29	3.1	3.49	—	3.3	0.010	0.90	3.0	0.05	14.75	0.00	1.753	4.66	2.50	3.5	96.5	0.0	-2.47	0.77	0.86	3.56	3.3	0.003	0.69	0.0	0.04	15.90	0.00	1.967	8.61	0.23	2.9	97.1	0.0	0.53	1.27	0.79	0.89	2.47	36951	4849	28	0	12	0	0	logfile
✔	6oQV	20171	2022-05-17	2019-04-29	3.3	3.60	—	3.4	0.010	0.94	1.0	0.05	14.75	0.00	1.740	5.27	2.95	4.1	95.9	0.0	-2.77	0.76	0.85	3.07	3.4	0.003	0.69	0.0	0.04	15.69	0.00	1.933	8.23	0.23	2.7	97.3	0.0	0.90	1.99	0.79	0.88	2.33	36971	4851	28	0	12	0	0	logfile
✔	6WNQ	21854	2022-05-17	2020-04-23	3.4	3.73	—	3.5	0.012	1.16	2.0	0.06	14.48	0.01	1.781	3.91	2.16	3.0	97.0	0.0	-1.62	0.76	0.85	2.50	3.5	0.004	0.71	0.0	0.04	15.97	0.00	1.879	10.02	0.21	3.1	96.9	0.0	0.89	1.72	0.77	0.87	1.97	37024	4857	28	0	12	0	0	logfile
✔	6oQU	20170	2022-05-17	2019-04-29	3.2	3.50	—	3.3	0.009	0.93	2.0	0.05	14.95	0.00	1.718	4.70	2.92	3.5	96.5	0.0	-2.70	0.75	0.86	3.08	3.3	0.005	0.72	0.0	0.04	15.80	0.01	1.860	8.70	0.39	2.8	97.2	0.0	0.51	0.66	0.78	0.89	2.35	36971	4851	28	0	12	0	0	logfile
✔	6VKT	21229	2022-05-15	2020-01-22	2.72	3.21	—	3.1	0.006	0.80	0.0	0.17	13.65	0.01	1.442	19.82	0.00	2.6	97.4	0.0	-1.19	0.73	0.83	2.87	3.1	0.003	0.71	0.0	0.07	15.33	0.00	1.993	5.71	1.72	3.0	97.0	0.0	1.61	0.55	0.69	0.83	2.57	24331	3122	6	0	24	0	0	logfile
✔	6oQS	20168	2022-05-17	2019-04-29	3.3	3.55	—	3.4	0.008	0.85	0.0	0.05	14.37	0.00	1.849	5.70	1.80	2.5	97.5	0.0	-2.20	0.76	0.86	3.40	3.4	0.003	0.67	0.0	0.04	15.90	0.00	1.977	8.82	0.23	2.5	97.5	0.0	0.61	1.67	0.78	0.89	2.45	36971	4851	28	0	12	0	0	logfile
✔	6oQT	20169	2022-05-17	2019-04-29	3.1	3.48	—	3.3	0.008	0.86	1.0	0.05	14.36	0.00	1.781	3.86	1.96	2.9	97.1	0.0	-2.11	0.78	0.88	3.44	3.3	0.003	0.64	0.0	0.04	15.72	0.00	1.967	7.01	0.34	2.4	97.6	0.0	0.89	1.24	0.79	0.89	2.51	36971	4851	28	0	12	0	0	logfile
✔	6KQK	0753	2022-05-13	2019-08-18	2.17	3.14	—	2.8	0.018	1.15	12.0	0.06	15.47	0.00	1.876	11.30	0.00	7.4	92.6	0.0	-4.38	0.82	0.84	4.45	2.8	0.004	0.73	4.0	0.12	16.21	0.00	1.757	9.64	0.72	4.4	95.6	0.0	0.10	0.80	0.82	0.86	4.10	63373	3936	24	0	48	0	31225	logfile
✔	6SK0	10219	2022-05-12	2019-08-14	2.3	2.30	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.005	0.72	0.0	0.05	17.22	0.00	2.164	10.52	0.65	4.5	95.5	0.0	-1.28	1.50	0.80	0.90	6.82	5826	792	3	0	0	0	0	logfile
✔	6XCN	22128	2022-05-16	2020-06-08	3.66	3.89	—	3.7	0.011	0.90	0.0	0.05	14.05	0.00	2.117	15.11	1.08	10.2	89.8	0.0	-4.10	0.78	0.87	2.22	3.7	0.005	0.76	0.0	0.04	15.08	0.00	2.053	9.90	0.07	5.3	94.7	0.0	-1.13	0.99	0.77	0.86	1.63	28662	3636	27	0	60	0	0	logfile

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