Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KAi	22771	2021-12-02	2020-10-01	3.2	3.86	3.25	3.5	0.003	0.53	0.0	0.04	12.28	0.00	2.229	4.23	0.00	3.6	96.4	0.0	-1.28	0.67	0.85	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10718	1343	7	0	56	0	0	logfile
✔	6LYY	30019	2021-12-01	2020-02-16	3.2	3.40	—	3.9	0.013	1.39	9.0	0.10	13.52	0.01	2.152	14.46	0.90	8.3	91.7	0.0	-3.75	0.38	0.51	1.45	3.7	0.004	0.76	0.0	0.04	15.92	0.01	2.235	9.81	1.20	4.7	95.3	0.0	0.24	1.24	0.46	0.66	1.88	4104	597	3	0	1	0	0	logfile
✔	7KAK	22773	2021-12-02	2020-10-01	3.9	4.59	4.06	4.2	0.003	0.54	0.0	0.04	11.57	0.00	2.246	6.34	0.00	2.9	97.1	0.0	-1.34	0.66	0.83	1.49	4.2	0.004	0.70	0.0	0.04	14.15	0.00	2.215	11.64	0.28	3.6	96.4	0.0	1.69	0.64	0.66	0.84	1.72	10437	1371	6	0	0	0	0	logfile
✔	7CWo	30485	2021-12-01	2020-08-29	3.9	4.25	—	4.1	0.007	1.04	0.0	0.06	9.37	0.01	2.262	9.56	0.28	8.4	91.6	0.0	-3.72	0.58	0.75	2.31	4.1	0.007	0.94	0.0	0.05	14.05	0.01	2.145	16.93	0.57	6.2	93.8	0.0	-2.40	1.73	0.58	0.74	1.45	3254	422	3	0	0	0	0	logfile
✘	7CZ5	30505	2021-12-01	2020-09-07	2.6	2.89	—	2.9	0.004	0.69	0.0	0.05	13.20	0.00	2.186	6.27	0.00	3.3	96.7	0.0	-2.04	0.60	0.80	4.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8336	1046	11	0	3	3	0	logfile
✔	7A6U	11674	2021-12-01	2020-08-26	3.62	3.94	3.83	3.9	0.006	0.88	0.0	0.05	14.62	0.01	2.283	2.81	0.76	2.7	97.3	0.0	-3.37	0.72	0.85	2.18	3.9	0.004	0.71	0.0	0.04	16.16	0.01	2.043	9.53	0.19	2.7	97.3	0.0	1.77	0.97	0.72	0.85	2.09	10140	1328	8	0	4	0	0	logfile
✔	6Z3Z	11067	2021-12-01	2020-05-22	3.19	3.90	—	3.6	0.003	0.62	0.0	0.04	13.78	0.00	2.198	8.80	0.31	6.4	93.6	0.0	-0.26	0.62	0.69	0.75	3.7	0.010	1.06	0.0	0.04	15.74	0.01	2.225	15.97	0.46	7.7	92.3	0.0	0.03	0.66	0.63	0.72	0.90	6115	769	2	0	0	0	0	logfile
✔	7KAT	22783	2021-12-02	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.85	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.002	0.57	0.0	0.04	12.07	0.00	2.070	9.26	0.00	2.1	97.9	0.0	2.26	1.32	0.65	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	6Z3Y	11066	2021-12-01	2020-05-22	3.51	3.78	3.53	3.6	0.002	0.52	0.0	0.04	11.75	0.00	2.269	9.16	1.68	5.6	94.4	0.0	0.09	0.59	0.70	0.69	3.6	0.004	0.89	0.0	0.05	15.16	0.01	2.094	17.35	0.61	8.7	91.3	0.0	-0.83	0.71	0.59	0.71	1.14	6131	771	2	0	0	0	0	logfile
✔	7KAR	22781	2021-12-02	2020-10-01	4.0	4.56	4.12	4.3	0.003	0.59	0.0	0.04	12.73	0.00	2.224	7.84	0.00	2.8	97.2	0.0	-1.41	0.66	0.83	—	4.3	0.003	0.65	0.0	0.04	14.59	0.00	2.156	9.64	0.09	2.2	97.8	0.0	1.79	0.53	0.67	0.84	—	10435	1341	6	0	0	0	0	logfile
✔	6XSS	22305	2021-12-01	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.015	1.65	1.0	0.04	17.18	0.01	2.065	21.16	0.36	1.6	98.4	0.0	2.61	1.33	0.75	0.80	0.22	8048	1040	4	0	0	0	0	logfile
✔	6XZQ	10665	2021-12-01	2020-02-05	3.6	4.18	3.53	3.7	0.005	0.64	0.0	0.04	15.64	0.01	1.924	5.93	1.26	5.0	95.0	0.0	-2.44	0.89	0.80	1.95	3.8	0.003	0.59	0.0	0.04	15.95	0.00	1.932	9.38	0.23	5.1	94.9	0.0	-0.42	0.77	0.90	0.82	1.84	56888	3492	8	19	0	0	28480	logfile
✔	7KAP	22779	2021-12-02	2020-10-01	4.1	4.58	4.09	4.2	0.003	0.55	0.0	0.04	11.24	0.00	2.205	7.95	0.00	2.3	97.7	0.0	-1.05	0.62	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10715	1342	7	0	56	0	0	logfile
✔	6WFQ	21652	2021-12-01	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.9	0.004	0.91	0.0	0.05	19.24	0.01	2.157	23.46	0.27	6.5	93.5	0.0	-0.40	1.01	0.85	0.81	0.54	4164	447	4	30	0	0	0	logfile
✔	7KAo	22778	2021-12-02	2020-10-01	4.0	4.59	4.08	4.2	0.003	0.53	0.0	0.04	11.87	0.00	2.202	7.70	0.00	2.3	97.7	0.0	-1.25	0.65	0.84	—	4.2	0.007	0.80	0.0	0.04	14.15	0.00	2.105	14.51	0.45	3.8	96.2	0.0	1.16	1.25	0.66	0.85	—	10502	1349	6	0	0	0	0	logfile
✔	6ZXA	11516	2021-12-01	2020-07-29	2.38	2.34	—	2.3	0.019	3.63	0.0	0.07	20.59	0.01	2.324	10.63	5.21	12.8	87.2	0.0	-1.00	0.75	0.90	5.13	2.3	0.018	2.56	0.0	0.06	20.71	0.01	2.154	13.10	2.53	11.5	88.5	0.0	0.83	0.35	0.75	0.88	4.32	8442	791	28	0	35	0	0	logfile
✔	7KAU	22784	2021-12-02	2020-10-01	4.0	4.56	4.11	4.3	0.003	0.56	0.0	0.04	12.12	0.00	2.251	6.32	0.00	3.2	96.8	0.0	-0.93	0.64	0.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10711	1340	7	0	56	0	0	logfile
✔	7JGF	22325	2021-12-01	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.51	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.48	0.0	0.04	13.28	0.00	2.151	52.23	0.41	5.2	94.8	0.0	1.10	0.63	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	7L0S	23102	2021-12-01	2020-12-12	4.5	4.35	4.13	4.2	0.008	1.34	2.0	0.08	13.52	0.01	2.107	9.65	1.39	6.0	94.0	0.0	-3.19	0.61	0.63	—	4.2	0.004	0.78	0.0	0.04	13.21	0.00	2.147	19.30	0.00	3.8	96.2	0.0	-0.05	3.56	0.64	0.74	—	7906	1001	5	0	0	0	0	logfile
✔	6X14	21988	2021-12-01	2020-05-18	3.71	3.82	—	3.8	0.008	1.10	0.0	0.05	16.45	0.01	2.282	6.68	0.00	3.2	96.8	0.0	-4.81	0.62	0.83	1.45	3.9	0.007	0.86	0.0	0.04	16.77	0.00	2.188	7.97	0.00	3.0	97.0	0.0	0.10	1.15	0.61	0.83	1.32	9486	1239	6	0	9	0	0	logfile

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