Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RiQ	4897	2021-04-03	2019-04-24	3.1	3.19	—	3.3	0.006	1.00	0.0	0.05	14.77	0.00	2.001	6.96	0.00	5.2	94.8	0.0	-4.36	0.63	0.78	2.59	3.2	0.004	0.67	0.0	0.05	14.36	0.00	2.009	9.52	0.00	4.6	95.4	0.0	-1.37	1.34	0.66	0.81	2.97	30327	3971	33	0	22	0	0	logfile
✔	6SD5	10149	2021-04-02	2019-07-26	3.1	3.26	3.11	3.2	0.006	0.71	0.0	0.04	15.04	0.00	2.321	8.86	1.39	8.3	91.7	0.0	-5.48	0.67	0.85	3.48	3.3	0.003	0.61	0.0	0.04	14.31	0.00	2.287	9.00	0.00	2.4	97.6	0.0	-1.31	1.98	0.68	0.85	3.88	14212	1936	22	0	0	0	0	logfile
✔	6LB0	0866	2021-04-04	2019-11-13	3.6	3.79	—	3.7	0.006	0.86	0.0	0.05	13.62	0.01	0.919	7.46	0.00	6.5	93.5	0.0	-3.90	0.74	0.89	4.20	3.7	0.004	0.62	0.0	0.04	12.41	0.00	2.072	6.99	0.00	6.4	93.6	0.0	-1.66	0.51	0.74	0.89	4.19	148140	19440	60	0	0	0	0	logfile
✔	6oDJ	20021	2021-04-03	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.6	0.012	1.74	0.0	0.06	7.96	0.00	2.119	11.87	0.00	0.0	0.0	0.0	—	0.66	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	6oEF	20020	2021-04-05	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.18	0.0	0.05	5.87	0.00	2.195	7.67	0.00	0.0	0.0	0.0	—	0.60	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	6TAP	10423	2021-04-25	2019-10-30	3.5	2.55	—	2.5	0.006	0.87	120.0	0.06	14.78	0.01	1.801	16.69	0.33	7.8	92.2	0.0	-1.90	0.75	0.75	2.23	2.4	0.002	0.57	0.0	0.04	14.79	0.00	2.116	2.95	0.02	4.2	95.8	0.0	1.01	0.82	0.79	0.78	2.62	337140	41160	300	0	60	0	0	logfile
✔	6oEG	20020	2021-04-02	2019-03-27	3.8	3.93	—	3.9	0.008	1.12	0.0	0.06	13.46	0.01	2.370	5.57	5.56	8.1	91.9	0.0	-4.92	0.42	0.78	3.01	3.9	0.003	0.69	0.0	0.04	14.09	0.00	2.174	8.70	0.00	8.2	91.8	0.0	-1.31	0.97	0.43	0.78	2.37	18564	2268	14	0	0	0	0	logfile
✔	6oDi	20020	2021-04-02	2019-03-26	3.8	3.96	—	3.9	0.008	0.98	0.0	0.07	14.95	0.01	2.406	7.56	4.19	9.8	90.2	0.0	-4.06	0.47	0.83	1.38	3.9	0.003	0.68	0.0	0.05	13.15	0.00	2.074	12.84	0.04	10.0	90.0	0.0	-2.30	0.80	0.48	0.83	1.94	20902	2772	14	0	0	0	0	logfile
✔	6DW1	8923	2021-04-01	2018-06-26	3.1	3.36	—	3.3	0.005	0.89	0.0	0.05	11.31	0.01	2.304	4.67	0.00	5.7	94.3	0.0	-3.70	0.68	0.82	4.57	3.3	0.003	0.64	0.0	0.04	13.46	0.00	2.141	9.11	0.00	5.5	94.5	0.0	-1.27	1.19	0.69	0.84	4.54	8595	1046	9	0	24	0	0	logfile
✔	6oEE	20020	2021-04-03	2019-03-27	3.8	3.96	—	3.8	0.008	1.19	0.0	0.06	17.19	0.01	2.159	9.17	3.57	14.9	85.1	0.0	-4.60	0.35	0.74	0.83	3.8	0.003	0.75	0.0	0.04	15.28	0.00	2.235	10.14	0.00	12.8	87.2	0.0	-1.10	1.03	0.35	0.74	0.73	28000	3402	14	0	0	0	0	logfile
✘	6KiG	9995	2021-04-02	2019-07-18	2.9	2.98	—	2.9	0.007	1.00	0.0	0.06	20.59	0.03	1.361	8.20	0.03	2.9	97.1	0.0	-2.57	0.69	0.74	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	143022	12888	108	0	846	54	0	logfile
✔	6HS7	0264	2021-04-05	2018-09-28	4.6	3.02	4.27	4.3	0.006	1.00	1.0	0.05	14.59	0.01	2.156	6.39	0.04	10.5	89.5	0.0	-5.02	0.77	0.69	—	4.3	0.003	0.73	0.0	0.04	14.10	0.00	2.092	11.23	0.04	8.4	91.6	0.0	-1.89	0.98	0.80	0.72	—	52890	6905	25	0	0	0	0	logfile
✘	6KiF	9994	2021-04-02	2019-07-18	3.3	3.42	—	3.3	0.008	1.06	0.0	0.06	20.19	0.03	1.354	9.03	0.03	2.9	97.1	0.0	-2.65	0.72	0.74	2.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	144312	13395	114	0	843	54	0	logfile
✔	6o81	0649	2021-04-04	2019-03-08	3.21	3.63	—	3.5	0.003	0.72	0.0	0.05	11.72	0.01	2.285	4.56	0.34	4.5	95.5	0.0	-4.06	0.69	0.65	0.06	3.5	0.010	0.88	0.0	0.05	12.35	0.00	2.107	11.77	0.00	7.7	92.3	0.0	-0.64	1.15	0.76	0.86	3.33	33693	4949	17	0	29	0	0	logfile
✔	6SSJ	10295	2021-04-03	2019-09-08	2.75	3.13	—	3.2	0.016	1.25	0.0	0.08	12.91	0.01	1.227	9.08	0.54	3.2	96.8	0.0	-4.66	0.49	0.47	-0.09	3.1	0.002	0.60	0.0	0.04	13.23	0.00	2.203	4.39	0.02	1.9	98.1	0.0	0.36	2.11	0.71	0.83	2.37	104100	13320	60	0	0	0	0	logfile
✔	6ACZ	9603	2021-04-14	2018-07-28	4.3	4.41	—	4.3	0.007	0.94	0.0	0.06	9.98	0.01	0.697	10.93	0.00	9.3	90.7	0.0	-4.44	0.71	0.89	—	4.3	0.003	0.64	0.0	0.04	12.88	0.00	2.134	7.76	0.00	6.9	93.1	0.0	-2.51	0.78	0.72	0.89	—	305640	39120	180	0	0	0	0	logfile
✔	6SAG	10130	2021-04-05	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.003	0.62	0.0	0.04	15.22	0.01	2.044	2.91	1.22	3.2	96.8	0.0	1.50	0.73	0.59	0.88	6.92	54080	6120	240	120	240	2840	0	logfile
✔	6P6F	20261	2021-04-06	2019-06-03	4.5	4.71	4.50	4.6	0.017	1.59	0.0	0.09	9.24	0.01	2.442	0.07	0.00	0.3	99.7	0.0	0.73	0.71	0.82	—	4.6	0.005	0.89	0.0	0.05	13.97	0.01	2.266	20.39	0.00	1.7	98.3	0.0	-0.40	1.34	0.73	0.80	—	159840	21060	120	0	0	0	0	logfile
✔	6UZ8	20953	2021-04-03	2019-11-14	2.84	3.21	—	3.1	0.052	1.87	4.0	0.34	14.13	0.02	2.298	2.20	0.17	4.3	95.7	0.0	-3.69	0.72	0.84	3.29	3.1	0.009	1.62	8.0	0.12	14.28	0.01	1.770	18.12	0.00	4.1	95.9	0.0	-2.28	0.37	0.77	0.87	3.21	23320	2936	8	0	16	0	0	logfile
✔	6V1S	21016	2021-04-02	2019-11-21	3.8	3.91	—	3.9	0.007	0.75	0.0	0.05	14.40	0.01	2.181	10.11	0.25	12.6	87.4	0.0	-5.42	0.74	0.86	2.93	3.9	0.005	0.68	0.0	0.05	14.24	0.00	2.002	9.12	0.05	8.9	91.1	0.0	-3.06	0.38	0.74	0.85	2.91	17964	2293	15	0	14	0	0	logfile

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