Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UM0	24763	2023-04-26	2022-04-05	3.8	4.24	3.93	4.1	0.005	0.51	0.0	0.04	14.42	0.00	2.224	7.24	0.12	2.8	97.2	0.0	-0.49	0.84	0.84	1.50	4.0	0.002	0.50	0.0	0.04	15.24	0.00	2.202	6.60	0.24	2.8	97.2	0.0	-0.22	0.36	0.84	0.84	1.64	21760	2647	7	1	3	0	0	logfile
✔	8F7W	28911	2023-04-21	2022-11-20	3.19	3.44	3.14	3.4	0.004	0.80	0.0	0.06	8.06	0.01	2.282	3.96	0.10	1.9	98.1	0.0	-1.80	0.58	0.75	1.92	3.4	0.003	0.58	0.0	0.04	13.69	0.00	2.162	8.41	0.00	2.1	97.9	0.0	0.69	1.23	0.60	0.81	2.39	9087	1145	7	0	5	0	0	logfile
✔	6ZKT	11261	2023-04-23	2020-06-30	2.8	2.58	—	2.8	0.008	1.00	0.0	1.03	11.56	0.01	2.200	4.93	0.07	3.9	96.1	0.0	-2.94	0.57	0.81	4.03	2.8	0.009	1.61	0.0	0.31	16.51	0.00	2.075	11.62	2.18	3.6	96.4	0.0	0.31	1.63	0.59	0.83	3.13	66294	8070	67	0	36	0	0	logfile
✔	8A03	15046	2023-04-20	2022-05-26	3.2	3.30	3.21	3.3	0.002	0.44	0.0	0.04	14.18	0.00	2.399	3.41	0.00	2.4	97.6	0.0	0.63	0.51	0.84	2.31	3.3	0.002	0.50	0.0	0.05	16.53	0.00	2.187	4.93	0.32	3.0	97.0	0.0	-0.16	0.40	0.50	0.86	2.60	5511	717	3	0	0	0	0	logfile
✔	8A02	15045	2023-04-20	2022-05-26	3.2	3.27	3.19	3.3	0.003	0.47	0.0	0.05	14.61	0.00	2.264	4.31	0.00	2.0	98.0	0.0	0.16	0.53	0.84	2.28	3.3	0.004	0.53	0.0	0.05	17.20	0.00	2.228	5.11	0.32	2.3	97.6	0.1	-0.29	0.27	0.52	0.86	2.36	5511	717	3	0	0	0	0	logfile
✔	6LYY	30019	2023-04-20	2020-02-16	3.2	3.40	—	3.9	0.010	1.16	9.0	0.10	13.41	0.01	2.152	14.46	0.90	8.3	91.7	0.0	-3.75	0.38	0.51	1.45	3.7	0.003	0.73	0.0	0.04	15.57	0.00	2.234	10.71	1.20	4.9	95.1	0.0	0.23	1.65	0.46	0.67	1.62	4104	597	3	0	1	0	0	logfile
✔	7XZ6	33526	2023-04-24	2022-06-02	2.8	2.66	2.73	2.8	0.003	0.57	0.0	0.14	12.69	0.00	2.078	5.47	0.00	1.3	98.7	0.0	1.92	0.60	0.75	2.90	2.7	0.003	0.53	0.0	0.04	16.08	0.00	1.961	6.38	1.68	2.9	97.1	0.0	0.54	1.62	0.61	0.81	3.18	16458	1052	5	0	1	1	8192	logfile
✔	7SJ4	25153	2023-04-20	2021-10-15	2.86	3.15	—	3.2	0.002	0.43	0.0	0.04	9.56	0.00	2.278	3.47	0.93	1.3	98.7	0.0	0.95	0.62	0.72	3.73	3.2	0.003	0.60	0.0	0.04	14.86	0.00	2.263	6.56	1.86	1.9	98.1	0.0	1.57	3.30	0.59	0.71	2.52	3909	481	4	0	0	24	0	logfile
✔	7T6S	25726	2023-04-21	2021-12-14	3.0	2.75	—	3.0	0.013	1.29	3.0	0.10	13.45	0.01	2.223	9.06	0.10	2.2	97.8	0.0	-0.64	0.60	0.81	3.66	3.0	0.003	0.59	0.0	0.04	15.64	0.00	2.146	9.40	2.27	2.3	97.7	0.0	-0.12	1.59	0.61	0.83	3.03	8906	1136	5	0	1	0	0	logfile
✔	8A04	15047	2023-04-20	2022-05-26	3.2	3.28	3.22	3.3	0.004	0.60	0.0	0.05	14.53	0.00	2.113	4.31	0.00	1.5	98.5	0.0	-0.52	0.52	0.85	3.07	3.3	0.003	0.53	0.0	0.05	16.49	0.00	2.180	3.86	0.48	2.3	97.7	0.0	-0.38	0.30	0.50	0.86	3.08	5511	717	3	0	0	0	0	logfile
✔	6UAN	20708	2023-04-20	2019-09-11	3.9	4.03	—	3.9	0.007	0.95	0.0	0.06	16.09	0.01	2.256	7.56	1.03	8.1	91.9	0.0	-5.36	0.76	0.80	1.99	3.9	0.003	0.75	0.0	0.04	17.21	0.00	2.202	14.12	0.90	4.6	95.4	0.0	-1.75	1.24	0.76	0.78	1.36	7685	1007	4	0	0	0	0	logfile
✔	6L3H	0822	2023-04-22	2019-10-11	3.06	3.17	—	3.2	0.007	0.77	0.0	0.05	13.75	0.00	2.036	4.56	0.16	6.8	93.2	0.0	-4.60	0.71	0.88	2.96	3.2	0.002	0.57	0.0	0.04	15.07	0.00	2.120	4.85	0.41	5.1	94.9	0.0	-0.24	0.38	0.69	0.87	2.06	11966	1482	4	0	8	0	0	logfile
✔	7T6T	25727	2023-04-20	2021-12-14	3.2	2.74	—	3.3	0.011	1.55	0.0	0.10	13.22	0.01	2.223	13.63	1.16	2.0	98.0	0.0	0.19	0.68	0.80	2.07	3.3	0.003	0.72	0.0	0.04	16.62	0.00	2.163	13.22	0.39	2.4	97.6	0.0	-0.08	0.71	0.66	0.81	2.17	7164	908	5	0	2	0	0	logfile
✔	7NSG	12566	2023-04-21	2021-03-05	3.34	3.46	3.26	3.4	0.009	1.01	0.0	0.05	13.50	0.01	2.307	2.71	0.00	3.1	96.9	0.0	-3.82	0.65	0.84	2.86	3.5	0.003	0.56	0.0	0.04	14.39	0.00	2.181	5.71	0.00	1.7	98.3	0.0	1.87	3.46	0.62	0.83	1.98	10356	1290	6	0	24	0	0	logfile
✔	7C2E	30274	2023-04-21	2020-05-07	4.2	4.27	—	4.2	0.004	0.80	0.0	0.05	9.28	0.01	2.071	4.42	0.00	4.9	95.1	0.0	-3.36	0.63	0.67	—	4.2	0.003	0.74	0.0	0.04	12.86	0.00	2.134	17.28	0.00	6.4	93.6	0.0	-0.79	2.63	0.66	0.72	—	8828	1094	5	0	1	0	0	logfile
✔	6WM0	21846	2023-04-20	2020-04-20	3.52	3.75	—	3.7	0.003	0.59	0.0	0.04	14.11	0.00	2.281	6.43	0.00	2.6	97.4	0.0	-0.89	0.74	0.81	2.63	3.7	0.003	0.61	0.0	0.04	16.06	0.00	2.232	6.79	0.47	2.8	97.2	0.0	3.29	2.36	0.73	0.81	2.04	4105	510	3	0	5	0	0	logfile
✔	6NF4	9360	2023-04-20	2018-12-18	2.98	3.35	—	3.3	0.009	1.09	0.0	0.07	13.64	0.01	2.379	2.34	0.27	3.2	96.8	0.0	0.16	0.69	0.84	3.04	3.3	0.003	0.60	0.0	0.04	16.38	0.00	2.319	6.87	1.08	4.0	96.0	0.0	4.23	1.14	0.57	0.82	2.03	6960	842	4	0	8	0	0	logfile
✔	6ZKE	11246	2023-04-24	2020-06-30	2.6	2.73	—	2.6	0.008	1.02	0.0	1.03	11.88	0.01	2.257	5.00	0.07	3.4	96.6	0.0	-2.62	0.77	0.88	4.65	2.6	0.008	1.58	0.0	0.31	15.75	0.00	2.123	10.12	1.42	2.8	97.2	0.0	0.98	1.60	0.78	0.89	3.72	67450	8160	70	0	46	0	0	logfile
✔	5ZYA	6915	2023-04-24	2018-05-23	3.95	4.18	—	4.1	0.009	1.35	0.0	0.16	11.24	0.01	1.673	8.53	0.32	9.6	90.4	0.0	-4.57	0.67	0.52	0.10	4.0	0.004	0.93	0.0	0.06	15.44	0.00	2.070	18.03	0.70	7.4	92.6	0.0	-1.92	1.82	0.77	0.72	0.97	16957	2143	7	0	5	0	0	logfile
✔	6RVX	10016	2023-04-21	2019-06-03	3.61	3.75	3.53	3.8	0.006	0.99	0.0	0.05	14.07	0.01	2.261	5.00	0.29	8.0	92.0	0.0	-5.46	0.65	0.80	1.54	3.8	0.003	0.69	0.0	0.04	15.28	0.00	2.179	9.45	0.39	4.5	95.5	0.0	-0.63	1.14	0.63	0.79	0.97	9627	1290	3	0	0	0	0	logfile

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