Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WUT	21918	2022-12-11	2020-05-05	3.0	3.08	—	3.1	0.008	0.89	0.0	0.05	13.93	0.01	2.253	3.66	5.79	6.2	93.8	0.0	-4.07	0.70	0.82	3.81	3.1	0.002	0.59	0.0	0.04	15.60	0.00	2.189	5.60	3.90	3.8	96.2	0.0	0.05	4.28	0.68	0.83	3.26	8218	1087	3	0	0	0	0	logfile
✔	6LXD	30005	2022-12-13	2020-02-10	3.9	3.67	—	3.5	0.002	0.55	0.0	0.04	13.46	0.00	2.239	15.47	0.70	9.3	90.7	0.0	-3.27	0.87	0.79	0.87	3.5	0.003	0.76	0.0	0.04	15.19	0.00	2.137	17.74	0.12	9.0	91.0	0.0	-1.58	0.67	0.88	0.79	0.94	9435	963	5	72	2	0	0	logfile
✔	6WVM	21923	2022-12-15	2020-05-06	3.3	3.76	3.18	3.8	0.013	1.96	6.0	0.10	16.19	0.02	1.972	1.00	0.55	1.9	98.1	0.0	-1.87	0.45	0.49	0.63	3.6	0.004	0.67	0.0	0.04	17.19	0.00	1.716	12.71	0.34	2.8	97.2	0.0	-0.40	2.54	0.54	0.78	2.34	26744	1712	8	2	6	0	13046	logfile
✔	6WVL	21922	2022-12-15	2020-05-06	3.2	3.69	3.05	3.8	0.013	1.98	5.0	0.10	16.20	0.02	1.944	0.89	0.41	1.8	98.2	0.0	-1.96	0.44	0.48	0.43	3.6	0.004	0.65	0.0	0.04	17.09	0.00	1.790	12.16	0.34	2.5	97.5	0.0	-0.04	2.51	0.51	0.77	2.46	26744	1712	8	2	6	0	13046	logfile
✔	6Y5H	10697	2022-12-12	2020-02-25	3.0	3.10	3.04	3.1	0.002	0.56	0.0	0.07	14.94	0.01	2.238	3.19	0.70	4.1	95.9	0.0	-2.50	0.53	0.56	0.43	3.1	0.003	0.55	0.0	0.04	17.13	0.00	2.171	4.21	3.59	1.7	98.3	0.0	-0.28	1.11	0.74	0.86	3.44	11994	1470	18	0	33	0	0	logfile
✔	6Y5G	10696	2022-12-12	2020-02-25	3.0	3.07	3.02	3.0	0.005	0.56	0.0	0.10	14.04	0.00	2.189	4.07	0.94	4.6	95.4	0.0	-2.94	0.73	0.84	4.03	3.0	0.004	0.66	0.0	0.05	16.38	0.00	2.213	3.60	2.34	4.4	95.6	0.0	-0.76	1.18	0.74	0.86	4.08	12036	1470	18	0	36	0	0	logfile
✔	7BZ2	30249	2022-12-11	2020-04-26	3.82	3.99	—	3.9	0.004	0.68	0.0	0.05	14.75	0.00	2.101	12.42	0.00	10.2	89.8	0.0	-6.04	0.73	0.79	2.10	3.9	0.002	0.64	0.0	0.04	16.48	0.00	2.125	8.60	0.68	4.1	95.9	0.0	-2.49	1.58	0.72	0.78	1.16	7393	978	5	0	1	0	0	logfile
✔	6XYE	10649	2022-12-12	2020-01-30	4.3	4.37	4.28	4.3	0.010	1.29	0.0	0.09	10.03	0.01	2.315	11.42	0.00	4.7	95.3	0.0	-3.09	0.71	0.69	—	4.3	0.003	0.75	0.0	0.05	12.45	0.00	2.159	14.59	0.00	8.0	92.0	0.0	-1.37	1.39	0.72	0.69	—	9834	1293	6	0	0	0	0	logfile
✔	6SLU	10240	2022-12-12	2019-08-20	4.7	4.88	4.61	4.8	0.004	0.64	0.0	0.04	9.23	0.00	1.454	9.92	0.18	1.3	98.7	0.0	-1.03	0.69	0.77	—	4.7	0.004	0.87	0.0	0.05	13.27	0.01	2.140	20.43	0.00	3.9	96.1	0.0	-0.08	1.29	0.73	0.81	—	10336	1320	6	0	0	0	0	logfile
✔	6RFD	4863	2022-12-13	2019-04-12	3.9	4.01	—	3.9	0.006	0.83	0.0	0.05	11.19	0.01	2.077	3.50	0.00	4.4	95.6	0.0	-4.54	0.86	0.87	3.34	3.9	0.003	0.69	0.0	0.04	15.16	0.00	1.948	11.98	0.26	3.7	96.3	0.0	-0.21	2.13	0.86	0.87	2.76	14407	1821	9	2	4	0	0	logfile
✔	7C8D	30305	2022-12-12	2020-05-29	3.0	2.79	—	2.8	0.003	0.53	0.0	0.04	17.37	0.00	1.998	9.11	6.05	3.6	96.4	0.0	-2.80	0.71	0.76	3.07	2.8	0.002	0.67	0.0	0.04	17.96	0.00	2.097	10.56	3.98	4.8	95.2	0.0	0.05	1.10	0.72	0.78	2.36	6359	792	3	0	1	0	0	logfile
✔	6SKK	10226	2022-12-12	2019-08-15	3.6	3.76	3.63	3.7	0.003	0.60	0.0	0.04	12.96	0.00	2.319	7.69	0.18	1.7	98.3	0.0	-1.14	0.70	0.75	1.70	3.7	0.003	0.71	0.0	0.04	16.81	0.00	2.126	12.68	0.27	2.7	97.3	0.0	0.81	0.73	0.71	0.77	1.58	10328	1320	6	0	0	0	0	logfile
✔	6LN8	0927	2022-12-11	2019-12-28	3.1	3.26	3.33	3.3	0.003	0.56	0.0	0.04	12.81	0.00	2.051	6.74	0.00	3.0	97.0	0.0	-2.71	0.70	0.80	2.37	3.3	0.003	0.53	0.0	0.04	15.04	0.00	1.382	9.05	0.00	3.1	96.9	0.0	0.12	0.47	0.69	0.82	1.72	7739	1003	1	0	2	0	0	logfile
✔	6VRC	21367	2022-12-12	2020-02-07	3.2	3.32	—	3.3	0.010	1.27	2.0	0.08	15.90	0.01	2.170	11.64	3.70	7.7	92.3	0.0	-4.83	0.79	0.82	2.87	3.3	0.002	0.63	0.0	0.04	16.94	0.00	2.168	5.87	0.42	5.4	94.6	0.0	-0.42	0.89	0.80	0.86	2.18	9429	1007	2	51	0	0	0	logfile
✔	6LLY	0915	2022-12-11	2019-12-24	2.8	2.92	2.72	2.9	0.003	0.60	0.0	0.04	12.24	0.00	2.043	6.26	0.12	3.1	96.9	0.0	-4.03	0.66	0.79	2.62	2.9	0.003	0.57	0.0	0.04	15.47	0.00	1.330	8.18	1.16	2.9	97.1	0.0	0.06	0.49	0.64	0.80	1.86	7774	1006	1	0	2	0	0	logfile
✘	6UZV	20963	2022-12-19	2019-11-15	3.1	3.13	—	3.2	0.010	1.18	0.0	0.06	20.36	0.04	1.217	11.55	0.89	4.2	95.8	0.0	-1.85	0.71	0.84	3.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72606	6711	60	0	408	0	0	logfile
✔	6LN9	0928	2022-12-11	2019-12-28	3.4	3.61	3.06	3.6	0.003	0.54	0.0	0.04	12.32	0.00	2.075	7.70	0.00	4.1	95.9	0.0	-3.36	0.63	0.73	1.41	3.6	0.003	0.60	0.0	0.04	14.86	0.00	1.358	10.76	0.24	4.5	95.5	0.0	-0.23	0.53	0.62	0.75	1.21	7612	987	1	0	2	0	0	logfile
✔	6LN6	0925	2022-12-11	2019-12-28	2.9	3.03	2.87	3.0	0.005	0.64	0.0	0.04	11.98	0.00	2.035	6.60	0.00	2.0	98.0	0.0	-3.94	0.65	0.82	3.55	3.0	0.005	0.62	0.0	0.05	15.68	0.00	2.030	7.36	1.62	2.2	97.8	0.0	0.18	1.33	0.66	0.84	3.42	7836	1010	1	0	4	0	0	logfile
✔	6LN5	0924	2022-12-11	2019-12-28	2.8	2.93	2.78	2.9	0.005	0.63	0.0	0.04	12.32	0.00	2.027	5.39	0.12	2.0	98.0	0.0	-4.16	0.68	0.83	3.56	2.9	0.003	0.54	0.0	0.04	16.36	0.00	2.241	5.96	1.85	1.4	98.6	0.0	0.67	1.33	0.68	0.85	2.78	7840	1011	1	0	4	0	0	logfile
✔	6VJY	21220	2022-12-11	2020-01-18	4.3	4.47	—	4.3	0.003	0.64	0.0	0.04	14.40	0.00	2.223	12.44	0.13	4.1	95.9	0.0	-1.62	0.70	0.81	—	4.3	0.004	0.72	0.0	0.04	14.35	0.00	2.135	11.61	0.00	4.9	95.1	0.0	1.69	0.86	0.70	0.81	—	7266	883	2	0	0	0	0	logfile

• ← previous
• Page 2 of 443
• next →