Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VDA	31912	2023-04-26	2021-09-06	2.26	2.04	2.42	2.1	0.003	0.53	0.0	0.04	17.67	0.00	2.142	7.99	2.20	2.6	97.4	0.0	1.67	0.66	0.82	4.06	2.0	0.002	0.54	0.0	0.04	18.07	0.00	2.051	8.99	2.60	2.1	97.9	0.0	1.12	0.41	0.66	0.84	4.19	23292	2976	6	0	0	0	0	logfile
✔	8E98	27959	2023-04-24	2022-08-26	3.75	4.03	3.75	3.8	0.011	1.09	1.0	0.05	14.34	0.01	2.155	6.38	0.15	7.9	92.1	0.0	-1.29	0.79	0.76	1.70	3.8	0.003	0.69	0.0	0.05	14.49	0.00	2.085	7.13	0.51	7.3	92.6	0.1	-0.72	0.47	0.80	0.78	1.51	17208	2583	11	0	18	0	0	logfile
✔	6D3R	7793	2023-04-20	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	9.07	0.01	2.385	0.57	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.5	0.003	0.65	0.0	0.04	11.96	0.00	2.185	7.56	0.00	3.4	96.6	0.0	1.90	1.20	0.68	0.78	—	7610	1127	1	0	2	0	0	logfile
✔	8G86	29837	2023-04-22	2023-02-17	2.3	2.24	2.41	2.5	0.003	0.50	0.0	0.03	27.67	0.00	2.275	6.71	0.95	0.9	99.1	0.0	1.60	0.69	0.83	5.02	2.4	0.005	0.63	0.0	0.04	29.42	0.00	2.112	7.41	2.06	1.5	98.5	0.0	2.50	0.92	0.70	0.85	4.86	11972	759	10	290	0	0	0	logfile
✔	7SYo	25535	2023-04-29	2021-11-25	4.6	3.80	4.55	3.8	0.003	0.85	0.0	0.04	16.03	0.01	2.226	5.43	0.05	5.1	94.9	0.0	-2.93	0.62	0.68	—	3.7	0.005	0.74	0.0	0.04	16.79	0.01	1.991	19.18	0.07	8.6	91.4	0.0	-1.77	0.64	0.63	0.70	—	78846	4891	38	1863	2	0	0	logfile
✔	7WiJ	32531	2023-04-22	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.53	0.0	0.03	15.57	0.00	2.262	4.68	0.00	0.8	99.2	0.0	3.40	0.26	0.71	0.87	1.79	12396	1602	6	0	0	0	0	logfile
✔	7SYG	25527	2023-04-29	2021-11-25	4.3	3.38	4.15	3.2	0.003	0.74	0.0	0.04	15.60	0.01	2.257	4.87	0.00	5.1	94.8	0.0	-2.54	0.65	0.65	—	3.2	0.004	0.70	0.0	0.04	16.38	0.01	2.052	16.41	0.02	7.9	92.1	0.0	-1.62	1.09	0.66	0.68	—	78773	4891	38	1859	2	0	0	logfile
✔	7SYH	25528	2023-04-29	2021-11-25	4.6	3.30	4.36	3.2	0.003	0.79	2.0	0.04	15.07	0.01	2.250	5.14	0.02	5.7	94.2	0.0	-2.97	0.62	0.60	—	3.2	0.005	0.82	0.0	0.04	16.44	0.01	2.035	20.26	0.05	9.4	90.5	0.0	-1.92	1.20	0.63	0.63	—	78761	4891	38	1859	2	0	0	logfile
✔	7T3o	25666	2023-04-20	2021-12-08	3.3	3.72	—	3.7	0.006	0.68	0.0	0.05	13.49	0.00	2.284	3.91	0.29	7.1	92.9	0.0	-3.36	0.49	0.86	1.84	3.7	0.003	0.66	0.0	0.04	16.17	0.00	2.229	6.17	0.00	3.6	96.4	0.0	0.21	0.58	0.48	0.84	1.64	3410	452	1	0	0	0	0	logfile
✔	7WSR	32765	2023-04-21	2022-02-01	2.9	3.08	2.90	3.1	0.004	0.65	0.0	0.04	9.92	0.00	2.244	4.74	0.83	1.8	98.2	0.0	1.52	0.62	0.82	2.75	3.1	0.003	0.62	0.0	0.04	14.70	0.00	2.209	8.53	1.66	2.4	97.6	0.0	2.18	0.97	0.61	0.84	2.40	9366	1200	4	0	4	0	0	logfile
✔	8CSP	26966	2023-04-26	2022-05-13	2.66	2.56	2.70	2.8	0.004	0.65	0.0	0.39	14.80	0.01	1.957	2.81	0.00	1.7	98.3	0.0	0.74	0.72	0.79	3.50	2.8	0.006	0.84	0.0	0.12	16.69	0.00	1.907	6.31	1.54	2.4	97.6	0.0	0.95	0.49	0.73	0.82	3.27	69302	6645	40	738	38	0	0	logfile
✔	7YoN	33984	2023-04-21	2022-08-01	2.95	2.24	—	3.0	0.003	0.50	0.0	0.04	13.65	0.00	2.155	3.67	0.00	2.7	97.3	0.0	0.20	0.78	0.83	3.97	3.0	0.003	0.57	0.0	0.04	15.70	0.00	2.192	4.38	1.79	2.2	97.8	0.0	1.36	0.37	0.78	0.86	3.10	9161	1166	8	0	0	2	0	logfile
✔	6WXL	21961	2023-04-24	2020-05-11	2.76	2.33	2.78	2.9	0.005	0.71	0.0	0.05	14.13	0.01	2.281	2.90	0.16	3.2	96.8	0.0	-3.74	0.63	0.77	3.57	2.9	0.002	0.55	0.0	0.04	16.83	0.00	2.130	6.10	1.53	2.4	97.6	0.0	-0.91	1.10	0.68	0.81	3.39	17016	2175	18	0	9	0	0	logfile
✔	8CSU	26971	2023-04-25	2022-05-13	3.03	2.74	3.02	2.9	0.004	0.64	1.0	0.39	15.54	0.00	1.964	2.56	0.02	1.5	98.5	0.0	1.16	0.69	0.77	2.72	2.8	0.005	0.80	0.0	0.12	16.42	0.00	1.905	6.72	0.17	2.3	97.7	0.0	1.33	0.42	0.70	0.80	2.45	68661	6119	40	882	38	0	0	logfile
✔	7SYJ	25530	2023-04-29	2021-11-25	4.8	3.85	4.49	3.7	0.003	0.79	0.0	0.04	15.07	0.01	2.240	5.37	0.02	6.1	93.9	0.0	-2.97	0.71	0.63	—	3.6	0.004	0.68	0.0	0.04	16.13	0.00	1.961	18.87	0.02	8.2	91.8	0.0	-1.69	1.32	0.74	0.69	—	78761	4891	38	1859	2	0	0	logfile
✔	7FDA	31538	2023-04-22	2021-07-16	4.2	3.94	—	3.5	0.003	0.56	0.0	0.04	11.99	0.00	1.871	8.71	0.00	5.8	94.2	0.0	-0.86	0.72	0.63	—	3.1	0.004	0.75	0.0	0.04	13.16	0.00	2.055	16.36	0.00	5.8	94.2	0.0	-0.77	1.81	0.77	0.78	—	64497	8295	31	0	0	0	0	logfile
✔	7FDB	31539	2023-04-22	2021-07-16	4.8	5.04	4.73	8.8	0.003	0.57	0.0	0.04	13.84	0.00	1.761	12.61	0.00	7.3	92.6	0.0	-0.78	0.66	0.32	—	4.7	0.004	0.88	0.0	0.05	13.87	0.01	2.001	29.12	0.03	7.7	92.3	0.0	-1.80	2.25	0.77	0.68	—	64497	8295	31	0	0	0	0	logfile
✔	7YQ3	34018	2023-04-23	2022-08-05	3.6	3.98	3.76	4.0	0.013	1.20	5.0	0.07	16.55	0.01	2.136	5.51	0.32	8.9	91.1	0.0	-4.22	0.63	0.67	1.96	4.0	0.003	0.77	0.0	0.04	17.47	0.00	2.169	8.68	0.32	8.9	91.1	0.0	-2.48	1.20	0.74	0.79	1.35	14412	1707	5	28	0	0	0	logfile
✔	8CSS	26969	2023-04-24	2022-05-13	2.36	2.40	2.38	2.4	0.004	0.64	0.0	0.39	14.44	0.01	1.953	2.42	0.02	1.4	98.6	0.0	1.44	0.72	0.79	3.45	2.4	0.004	0.78	0.0	0.12	16.15	0.00	1.971	5.69	1.20	1.5	98.5	0.0	1.75	0.46	0.73	0.82	3.22	67466	6062	44	847	46	104	0	logfile
✔	7XDB	33142	2023-04-29	2022-03-26	2.62	2.82	2.70	2.8	0.004	0.64	0.0	0.05	12.28	0.01	2.111	9.82	0.00	1.9	98.1	0.0	0.54	0.69	0.83	3.23	2.8	0.002	0.55	0.0	0.04	14.87	0.00	2.120	8.69	1.09	2.4	97.6	0.0	0.27	0.44	0.70	0.87	3.25	30189	3779	23	0	38	0	0	logfile

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