Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QK3	14030	2023-11-13	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.72	0.0	0.05	16.27	0.00	2.309	2.92	0.64	2.8	97.2	0.0	-2.78	2.36	0.39	0.82	5.18	2742	183	3	0	0	0	1407	logfile
✔	5oDV	3785	2023-11-19	2017-07-06	4.0	4.43	4.14	4.4	0.008	0.80	0.0	0.05	10.27	0.01	1.941	6.34	0.00	13.2	86.8	0.0	-4.48	0.50	0.73	—	4.4	0.003	0.61	0.0	0.04	16.12	0.00	1.979	7.84	0.32	5.5	94.5	0.0	-1.95	1.13	0.53	0.81	—	82656	4968	48	120	0	0	40368	logfile
✔	7oZG	13123	2023-11-13	2021-06-28	3.3	3.21	2.71	3.6	0.023	1.83	0.0	0.10	12.75	0.01	2.254	17.09	0.00	8.7	91.3	0.0	-4.01	0.40	0.73	3.72	3.7	0.006	0.83	0.0	0.05	15.17	0.00	2.314	18.76	0.61	15.2	84.8	0.0	-4.68	3.41	0.35	0.68	5.07	4960	730	10	0	0	0	0	logfile
✔	7P6D	13226	2023-11-13	2021-07-15	3.3	3.43	3.17	3.5	0.003	0.66	0.0	0.05	11.41	0.00	2.575	2.25	0.00	2.7	97.3	0.0	-2.54	0.55	0.77	3.72	3.5	0.008	0.77	0.0	0.05	13.56	0.00	2.042	5.75	0.20	12.9	87.1	0.0	-3.20	2.43	0.48	0.83	4.66	4340	575	5	0	0	0	0	logfile
✔	7SAS	24955	2023-11-15	2021-09-23	3.7	3.32	—	4.1	0.005	0.87	0.0	0.07	12.81	0.01	2.166	18.82	0.00	12.0	88.0	0.0	-3.25	0.40	0.67	1.98	4.1	0.004	0.82	0.0	0.06	15.12	0.00	2.079	11.92	1.35	12.1	87.9	0.0	-3.56	0.74	0.44	0.75	3.53	11420	1350	20	0	40	0	0	logfile
✔	7oG6	12879	2023-11-13	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	17.33	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.60	0.0	0.04	16.45	0.00	2.215	10.56	0.00	6.6	93.4	0.0	-0.32	0.52	0.27	0.84	3.03	1602	199	2	5	0	0	0	logfile
✔	7Xo2	33334	2023-11-13	2022-04-30	3.0	2.83	2.60	2.9	0.001	0.38	0.0	0.05	18.12	0.00	2.586	6.10	0.00	5.0	95.0	0.0	-0.89	0.49	0.87	6.67	2.9	0.005	0.60	0.0	0.05	19.10	0.00	2.290	4.76	3.88	7.2	92.8	0.0	-1.69	2.16	0.49	0.88	6.49	2550	372	6	0	0	0	0	logfile
✔	8ADS	15369	2023-11-13	2022-07-11	3.05	2.91	2.80	3.2	0.004	0.49	0.0	0.06	13.38	0.00	2.218	11.86	0.00	1.4	98.6	0.0	-3.19	0.48	0.79	5.21	3.2	0.005	0.63	0.0	0.05	16.12	0.00	2.173	10.83	0.19	2.1	97.9	0.0	-3.69	0.54	0.49	0.82	5.70	5170	750	10	0	0	0	0	logfile
✔	7QVC	14174	2023-11-13	2022-01-21	2.64	2.62	2.62	2.6	0.012	2.09	10.0	0.12	15.49	0.01	2.525	0.00	0.53	5.8	94.2	0.0	-2.45	0.43	0.86	7.41	2.6	0.006	0.78	0.0	0.06	18.05	0.00	2.117	9.84	3.70	6.0	94.0	0.0	-2.38	2.44	0.42	0.90	5.84	3255	405	3	0	0	0	0	logfile
✔	8EDX	28042	2023-11-16	2022-09-06	2.81	2.99	2.70	2.9	0.006	0.60	0.0	0.05	15.44	0.00	2.378	5.42	0.71	4.7	95.3	0.0	-2.86	0.78	0.92	5.20	2.9	0.004	0.55	0.0	0.04	16.09	0.00	2.264	5.57	1.77	2.0	98.0	0.0	-0.55	0.33	0.79	0.92	5.12	16074	2088	6	0	0	0	0	logfile
✔	7Q8B	13863	2023-11-16	2021-11-11	3.3	3.20	3.22	3.2	0.004	0.50	0.0	0.05	10.85	0.00	2.012	3.76	0.00	2.7	97.3	0.0	1.33	0.70	0.86	4.06	3.1	0.004	0.56	0.0	0.05	15.00	0.00	2.070	6.14	0.19	2.5	97.5	0.0	0.74	0.48	0.71	0.89	3.78	14640	1850	10	0	15	0	0	logfile
✔	7P6E	13227	2023-11-14	2021-07-15	3.4	3.40	3.47	4.1	0.009	0.96	0.0	0.06	8.26	0.01	2.358	3.99	0.00	5.9	94.1	0.0	-4.80	0.54	0.80	4.38	4.1	0.005	0.72	0.0	0.05	13.11	0.00	2.134	11.17	0.21	8.3	91.7	0.0	-4.15	2.70	0.51	0.79	4.06	8090	1050	10	0	0	0	0	logfile
✔	8BGS	16035	2023-11-13	2022-10-28	3.16	3.15	2.98	3.3	0.009	1.64	0.0	0.10	13.08	0.01	2.368	1.46	0.00	6.8	93.2	0.0	-3.72	0.43	0.86	5.04	3.3	0.004	0.74	0.0	0.05	15.47	0.00	2.189	5.12	0.00	2.3	97.7	0.0	-2.80	1.70	0.36	0.81	3.29	4018	525	7	0	0	0	0	logfile
✔	7Q67	13854	2023-11-13	2021-11-05	3.37	3.41	2.44	3.4	0.020	2.21	0.0	0.14	14.47	0.01	2.280	12.16	8.00	16.1	83.9	0.0	-4.98	0.51	0.71	2.52	3.5	0.003	0.90	0.0	0.05	18.07	0.00	2.112	24.32	0.73	19.4	80.6	0.0	-4.92	2.31	0.45	0.69	0.92	2618	363	11	0	0	0	0	logfile
✔	8A7P	15223	2023-11-13	2022-06-21	3.4	3.32	3.49	3.5	0.002	0.54	0.0	0.04	10.48	0.01	2.313	6.43	1.83	4.7	95.3	0.0	-3.55	0.44	0.77	3.05	3.5	0.005	0.79	0.0	0.05	14.82	0.00	2.192	10.13	1.02	10.6	89.4	0.0	-3.96	0.80	0.45	0.81	3.02	4320	522	6	0	0	0	0	logfile
✔	7V49	31704	2023-11-13	2021-08-12	3.4	3.45	—	4.1	0.007	1.01	0.0	0.06	13.70	0.00	2.279	22.06	0.00	39.7	60.3	0.0	-7.67	0.33	0.73	5.03	4.1	0.003	0.73	0.0	0.05	14.81	0.00	2.500	7.22	0.00	13.2	86.8	0.0	-5.75	1.27	0.31	0.69	4.86	1221	180	3	0	0	0	0	logfile
✘	8A7T	15225	2023-11-13	2022-06-21	3.0	2.93	3.07	3.2	0.003	0.46	0.0	0.04	8.48	0.00	2.302	5.04	0.00	2.8	97.2	0.0	-4.48	0.39	0.85	4.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3702	444	6	0	0	0	0	logfile
✔	7oZH	13124	2023-11-13	2021-06-28	3.02	3.20	1.84	3.3	0.024	1.40	0.0	0.09	7.44	0.01	2.546	14.72	0.00	5.4	94.6	0.0	-2.78	0.33	0.60	4.68	3.2	0.004	0.69	0.0	0.05	15.03	0.00	2.382	17.11	2.05	8.2	91.8	0.0	-2.61	2.53	0.40	0.69	0.33	3890	580	10	0	0	0	0	logfile
✔	8AEX	15388	2023-11-13	2022-07-14	2.76	2.87	2.67	2.8	0.009	1.16	0.0	0.06	16.57	0.00	2.313	12.81	3.19	8.5	91.5	0.0	-3.01	0.49	0.85	5.31	2.8	0.004	0.79	0.0	0.05	17.93	0.00	2.305	10.42	4.47	8.2	91.8	0.0	-2.40	0.40	0.49	0.86	4.75	4665	680	10	0	0	0	0	logfile
✔	6N1H	8902	2023-11-15	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	32.07	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.003	0.74	0.0	0.04	17.47	0.00	2.143	11.92	2.70	7.2	92.8	0.0	1.00	4.76	0.63	0.84	1.82	10991	1328	16	0	0	0	0	logfile

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