Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X2C	22001	2022-07-05	2020-05-20	3.2	3.70	3.22	3.6	0.006	0.89	0.0	0.05	9.04	0.01	2.257	4.03	0.12	4.3	95.6	0.0	-3.93	0.76	0.77	3.04	3.6	0.006	0.86	0.0	0.04	12.25	0.01	2.181	9.88	0.08	3.8	96.2	0.0	-0.66	1.43	0.77	0.81	2.67	22827	2916	3	0	0	0	0	logfile
✔	7JPo	22417	2022-07-04	2020-08-09	3.2	2.55	—	3.2	0.007	1.09	0.0	0.06	15.53	0.01	2.073	2.48	0.00	3.0	97.0	0.0	-1.99	0.79	0.81	2.74	3.2	0.003	0.54	0.0	0.04	16.94	0.00	1.955	5.65	0.22	2.5	97.5	0.0	0.72	0.45	0.80	0.83	1.82	16087	1966	9	0	7	0	0	logfile
✔	7JK4	22361	2022-07-05	2020-07-27	3.4	3.91	3.47	3.6	0.006	0.95	0.0	0.05	17.55	0.01	2.102	4.64	0.32	4.1	95.9	0.0	-2.88	0.87	0.88	2.64	3.6	0.002	0.54	0.0	0.04	18.25	0.00	1.953	8.20	0.05	2.2	97.8	0.0	1.75	0.55	0.88	0.90	2.14	21717	2531	13	68	8	0	0	logfile
✔	7JPS	22421	2022-07-04	2020-08-09	4.4	5.22	—	3.8	0.006	1.19	1.0	0.06	16.52	0.01	2.102	4.40	0.00	3.1	96.9	0.0	-2.45	0.67	0.46	—	3.8	0.004	0.72	0.0	0.04	16.33	0.00	1.876	20.20	0.00	5.4	94.6	0.0	-0.52	1.56	0.84	0.72	—	16352	1932	11	26	7	0	0	logfile
✔	7JPR	22420	2022-07-04	2020-08-09	4.0	4.90	—	3.3	0.006	1.20	0.0	0.06	15.00	0.01	2.048	5.61	0.00	3.6	96.4	0.0	-2.74	0.82	0.68	—	3.6	0.003	0.72	0.0	0.04	16.55	0.00	1.924	17.21	0.21	3.2	96.8	0.0	0.50	0.91	0.86	0.76	—	16737	2045	8	0	6	0	0	logfile
✘	6L3V	0827	2022-07-04	2019-10-15	2.63	2.90	2.72	2.9	0.005	0.71	0.0	0.03	14.94	0.01	1.386	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19416	1206	12	0	6	0	9528	logfile
✔	6RJU	4906	2022-07-02	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	6Y97	10733	2022-07-03	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.28	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.004	0.76	0.0	0.04	13.35	0.00	2.096	18.78	0.00	6.8	93.2	0.0	0.33	1.52	0.72	0.72	—	4366	564	4	0	0	0	0	logfile
✔	6V7B	21094	2022-07-03	2019-12-08	3.4	3.51	—	3.4	0.008	0.84	0.0	0.05	16.15	0.01	2.234	4.03	0.11	3.1	96.9	0.0	-6.34	0.58	0.88	2.82	3.4	0.006	0.70	0.0	0.04	17.39	0.00	1.990	11.54	0.84	3.9	96.1	0.0	1.40	1.54	0.58	0.89	2.15	58277	5635	48	646	0	0	0	logfile
✔	6L54	0837	2022-07-05	2019-10-22	3.43	3.58	—	3.5	0.002	0.49	0.0	0.03	7.60	0.00	1.978	61.74	0.79	8.8	91.2	0.0	-3.87	0.77	0.72	1.74	3.5	0.011	0.97	0.0	0.04	14.18	0.01	1.792	71.56	0.25	12.8	87.2	0.0	-2.18	0.75	0.81	0.78	2.03	20387	2608	3	0	2	0	857	logfile
✔	7BT7	30171	2022-07-04	2020-03-31	3.8	3.86	—	3.8	0.004	0.66	0.0	0.05	13.36	0.00	1.970	12.49	8.39	7.7	92.3	0.0	-4.13	0.72	0.87	2.58	3.8	0.003	0.64	0.0	0.04	14.30	0.00	1.984	10.48	0.45	4.7	95.3	0.0	-1.10	2.42	0.72	0.86	1.96	14530	1850	10	0	10	0	0	logfile
✔	6LVC	0989	2022-07-04	2020-02-02	3.0	3.09	2.94	3.0	0.011	1.00	0.0	0.07	9.66	0.01	1.831	4.08	0.48	5.8	94.2	0.0	-2.79	0.80	0.89	5.99	3.1	0.004	0.61	0.0	0.05	14.65	0.00	1.983	6.67	1.91	4.6	95.4	0.0	-0.42	2.22	0.80	0.91	4.68	14138	1772	8	0	2	2	0	logfile
✔	6T0R	10357	2022-07-04	2019-10-03	2.82	2.90	2.91	2.9	0.005	0.66	0.0	0.05	13.99	0.01	2.279	4.12	4.99	3.5	96.5	0.0	-2.98	0.69	0.85	3.55	2.9	0.003	0.53	0.0	0.04	16.56	0.00	2.062	7.84	2.66	2.9	97.1	0.0	0.69	1.03	0.71	0.86	3.04	14120	1690	7	20	0	31	0	logfile
✔	6WBM	21593	2022-07-04	2020-03-26	2.86	3.86	—	3.4	0.007	0.82	0.0	0.05	17.58	0.00	2.192	15.42	0.80	5.6	94.4	0.0	-1.44	0.70	0.82	2.99	3.5	0.004	0.61	0.0	0.04	15.18	0.00	2.204	10.20	2.33	3.6	96.4	0.0	1.86	0.97	0.70	0.87	2.65	19201	2387	14	0	42	0	0	logfile
✘	6WEL	21651	2022-07-04	2020-04-02	2.5	2.95	—	2.9	0.011	1.09	0.0	0.06	16.05	0.01	1.172	8.44	3.02	3.9	96.1	0.0	-2.07	0.54	0.76	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17725	2052	8	0	37	0	0	logfile
✔	6T0S	10358	2022-07-04	2019-10-03	3.04	3.11	3.10	3.1	0.003	0.60	0.0	0.04	13.17	0.01	2.109	4.41	4.69	2.8	97.2	0.0	-3.21	0.68	0.86	3.59	3.1	0.003	0.55	0.0	0.04	15.00	0.00	1.894	9.54	0.26	2.4	97.6	0.0	0.48	0.53	0.70	0.88	3.48	14651	1700	6	43	2	0	0	logfile
✔	6VTT	21383	2022-07-04	2020-02-13	3.7	4.22	3.79	4.0	0.004	0.64	3.0	0.05	10.83	0.01	2.214	6.27	0.00	4.6	95.4	0.0	-4.61	0.82	0.82	2.05	4.0	0.005	0.65	0.0	0.05	13.53	0.00	2.182	10.19	0.35	7.8	92.2	0.0	-2.19	0.49	0.83	0.83	1.83	16607	1928	36	0	103	0	0	logfile
✔	6T0U	10359	2022-07-04	2019-10-03	3.12	3.20	3.13	3.2	0.005	0.68	0.0	0.05	14.30	0.01	2.273	3.99	5.25	3.4	96.6	0.0	-3.41	0.68	0.86	3.55	3.2	0.004	0.57	0.0	0.04	15.79	0.00	2.124	8.09	0.13	3.6	96.4	0.0	0.31	0.59	0.69	0.88	3.02	14176	1695	4	23	0	0	0	logfile
✘	6WEJ	21649	2022-07-04	2020-04-02	2.6	3.13	—	3.1	0.015	1.44	16.0	0.06	15.48	0.01	1.126	8.88	2.80	4.3	95.7	0.0	-2.04	0.62	0.80	3.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17665	2052	8	0	33	0	0	logfile
✘	6KQo	0754	2022-07-03	2019-08-18	2.52	3.75	—	3.2	0.019	1.15	0.0	0.07	14.44	0.00	1.259	10.69	0.03	9.4	90.6	0.0	-5.07	0.87	0.85	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63373	3936	24	0	48	0	31225	logfile

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