Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6MZV	9308	2022-12-18	2018-11-05	3.4	3.57	—	3.5	0.006	0.73	0.0	0.05	8.48	0.01	2.343	7.32	0.34	3.4	96.6	0.0	-4.51	0.79	0.86	4.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32833	4523	42	0	0	0	0	logfile
✔	6RQL	4984	2022-12-22	2019-05-16	2.9	2.93	—	3.0	0.009	1.09	1.0	0.06	12.93	0.01	1.977	6.69	0.74	8.3	91.7	0.0	-4.74	0.60	0.67	2.47	2.9	0.003	0.65	0.0	0.04	17.08	0.00	2.121	10.07	3.10	5.8	94.2	0.0	-0.68	1.62	0.70	0.75	2.02	51626	6246	20	84	0	0	0	logfile
✔	6RiE	4890	2022-12-21	2019-04-23	3.1	3.16	2.97	3.1	0.006	0.76	0.0	0.05	15.00	0.01	2.067	4.46	0.07	4.2	95.8	0.0	-3.21	0.80	0.85	3.51	3.1	0.004	0.55	0.0	0.04	16.03	0.00	1.405	8.01	0.12	3.6	96.4	0.0	-0.19	0.38	0.82	0.87	3.19	36583	4418	17	41	7	0	0	logfile
✔	6U2K	20621	2022-12-11	2019-08-20	2.93	3.31	3.29	3.3	0.010	0.98	0.0	0.06	10.03	0.01	2.354	3.34	0.19	9.7	90.3	0.0	-4.70	0.70	0.83	4.65	3.3	0.004	0.70	0.0	0.04	15.05	0.00	2.275	6.57	2.12	8.2	91.8	0.0	-2.00	1.20	0.65	0.81	2.97	4719	604	3	0	4	0	0	logfile
✔	6SB3	10134	2022-12-15	2019-07-18	3.5	3.63	3.51	3.7	0.002	0.56	0.0	0.04	12.95	0.00	2.104	13.36	0.00	4.9	95.1	0.0	-2.84	0.68	0.71	1.27	3.7	0.005	0.71	0.0	0.05	16.11	0.01	2.025	19.45	0.76	8.0	92.0	0.0	-1.75	1.63	0.71	0.77	0.99	75712	9664	32	0	32	0	0	logfile
✔	6EZM	4160	2022-12-20	2017-11-15	3.2	3.09	—	3.1	0.010	1.28	0.0	0.06	10.27	0.01	1.913	8.89	0.10	10.0	90.0	0.0	-4.97	0.79	0.82	4.74	3.1	0.004	0.69	0.0	0.05	15.82	0.01	2.051	10.65	0.23	8.3	91.7	0.0	-1.00	1.99	0.81	0.86	3.43	38400	5088	38	0	72	0	0	logfile
✔	6SKY	10231	2022-12-14	2019-08-16	2.8	2.95	—	3.0	0.009	0.69	0.0	0.05	13.80	0.00	2.077	5.12	3.63	4.2	95.8	0.0	-2.12	0.75	0.85	2.69	3.0	0.003	0.52	0.0	0.04	16.48	0.00	2.102	5.19	2.81	2.1	97.9	0.0	1.58	2.20	0.73	0.85	2.38	22348	2824	4	0	4	0	0	logfile
✔	6N0F	9314	2022-12-21	2018-11-07	3.9	4.01	—	4.0	0.008	0.86	0.0	0.06	9.18	0.01	2.235	7.55	0.31	4.7	95.3	0.0	-3.98	0.79	0.84	2.69	3.9	0.004	0.73	0.0	0.04	15.17	0.00	2.104	16.27	0.59	2.9	97.1	0.0	-0.82	1.65	0.81	0.84	1.86	46218	6303	51	0	0	0	0	logfile
✘	6RBD	4792	2022-12-19	2019-04-10	3.47	3.74	3.51	2.5	0.006	0.97	0.0	0.05	16.65	0.01	2.223	6.37	0.28	5.3	94.6	0.0	-3.01	0.90	0.81	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	81048	5450	35	1777	0	0	0	logfile
✔	6iZR	9757	2022-12-16	2018-12-20	4.7	4.86	—	4.7	0.004	0.90	0.0	0.05	11.50	0.01	2.086	6.64	0.26	6.9	93.1	0.0	-4.07	0.68	0.78	—	4.7	0.004	0.86	0.0	0.05	12.98	0.00	2.077	22.21	0.00	6.6	93.4	0.0	-0.51	2.07	0.66	0.71	—	84360	10470	60	0	60	0	0	logfile
✘	6C0W	7326	2022-12-18	2018-01-02	4.0	4.10	3.87	4.0	0.006	0.81	0.0	0.05	27.80	0.01	2.107	4.30	0.00	4.9	95.1	0.0	-4.19	0.80	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13122	925	11	278	0	0	0	logfile
✔	6RRD	4987	2022-12-22	2019-05-17	3.1	3.17	—	3.1	0.008	1.09	0.0	0.06	12.67	0.01	2.072	6.23	0.40	8.1	91.8	0.0	-4.92	0.72	0.74	3.13	3.1	0.003	0.66	0.0	0.04	16.73	0.00	2.107	10.98	0.40	6.4	93.6	0.0	-1.33	1.68	0.75	0.79	2.07	51631	6179	21	99	1	0	0	logfile
✔	6P9X	20277	2022-12-11	2019-06-10	2.91	3.05	2.91	3.1	0.004	0.57	0.0	0.04	12.46	0.00	2.211	5.77	0.23	2.1	97.9	0.0	-3.97	0.64	0.82	4.18	3.1	0.002	0.55	0.0	0.04	15.58	0.00	2.223	7.50	1.94	2.7	97.3	0.0	0.74	0.47	0.66	0.84	3.28	8177	1015	9	0	0	17	0	logfile
✔	6ME0	9105	2022-12-14	2018-09-05	3.6	3.74	—	3.6	0.010	1.16	0.0	0.05	17.63	0.01	1.531	13.75	0.00	11.8	88.2	0.0	-5.11	0.89	0.81	2.89	3.6	0.005	0.67	0.0	0.03	17.39	0.00	1.842	19.43	0.28	13.2	86.8	0.0	-2.26	1.22	0.89	0.82	2.07	21539	414	4	845	33	0	0	logfile
✔	6QXM	4669	2022-12-19	2019-03-07	4.1	2.35	—	3.5	0.008	1.25	0.0	0.06	18.91	0.01	2.333	6.84	8.63	9.3	90.7	0.0	-4.78	0.68	0.67	—	2.5	0.003	0.69	0.0	0.04	15.70	0.00	2.096	11.00	0.10	5.4	94.6	0.0	-1.31	1.63	0.66	0.65	—	37164	4704	12	0	0	0	0	logfile
✔	6UES	20755	2022-12-11	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6DDD	7867	2022-12-15	2018-05-10	3.1	3.19	—	3.1	0.008	0.85	0.0	0.05	16.16	0.01	1.998	16.52	0.05	10.6	89.4	0.0	-4.62	0.78	0.84	3.48	3.1	0.004	0.61	0.0	0.04	16.05	0.00	2.087	8.75	0.70	8.0	92.0	0.0	-2.13	2.16	0.79	0.86	2.91	79118	2568	28	2750	1	0	0	logfile
✔	6GEJ	4395	2022-12-21	2018-04-26	3.6	3.77	—	3.7	0.003	0.62	0.0	0.04	18.57	0.00	1.491	9.17	3.93	4.6	95.4	0.0	-2.70	0.82	0.77	0.98	3.7	0.004	0.68	0.0	0.04	20.51	0.00	0.867	10.76	0.38	4.4	95.6	0.0	-0.05	0.83	0.83	0.80	0.97	43702	4683	29	308	151	0	0	logfile
✔	6T61	10381	2022-12-16	2019-10-17	3.7	3.68	—	3.6	0.006	0.93	0.0	0.05	15.61	0.01	0.321	8.35	0.00	8.1	91.9	0.0	-3.35	0.50	0.77	1.47	3.6	0.003	0.76	0.0	0.04	17.80	0.00	2.091	12.21	0.48	6.0	94.0	0.0	0.82	1.64	0.51	0.78	0.72	30978	3906	18	0	0	0	0	logfile
✔	6CU8	7619	2022-12-11	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.79	0.0	0.06	12.89	0.00	2.161	16.36	0.65	15.9	84.1	0.0	-3.37	1.79	0.42	0.73	2.58	2880	410	10	0	0	0	0	logfile

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