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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8FJS | 29246 | 2024-03-19 | 2022-12-20 | 3.0 | 3.18 | 2.85 | 3.2 | 0.002 | 0.45 | 0.0 | 0.04 | 10.15 | 0.00 | 2.362 | 4.56 | 0.00 | 3.8 | 96.2 | 0.0 | 0.15 | 0.49 | 0.82 | 2.84 | 3.1 | 0.003 | 0.56 | 0.0 | 0.05 | 12.72 | 0.00 | 2.222 | 5.31 | 2.17 | 4.2 | 95.8 | 0.0 | 0.20 | 0.32 | 0.53 | 0.86 | 2.64 | 22550 | 3300 | 25 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oRD | 17120 | 2024-03-16 | 2023-04-13 | 3.9 | 4.04 | 3.89 | 4.1 | 0.005 | 0.92 | 0.0 | 0.05 | 17.82 | 0.01 | 2.109 | 19.32 | 0.58 | 2.3 | 97.7 | 0.0 | -0.41 | 0.55 | 0.81 | 1.69 | 4.0 | 0.003 | 0.78 | 0.0 | 0.05 | 18.04 | 0.00 | 2.148 | 17.25 | 4.18 | 2.5 | 97.5 | 0.0 | 0.00 | 0.45 | 0.56 | 0.82 | 1.57 | 14590 | 1850 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6K99 | 9947 | 2024-03-17 | 2019-06-14 | 4.1 | 6.62 | 4.25 | 6.7 | 0.003 | 0.72 | 0.0 | 0.04 | 12.51 | 0.00 | 2.388 | 7.15 | 1.46 | 7.6 | 92.4 | 0.0 | -2.97 | 0.73 | 0.83 | — | 6.9 | 0.003 | 0.90 | 0.0 | 0.05 | 13.09 | 0.00 | 2.099 | 16.02 | 0.00 | 6.3 | 93.7 | 0.0 | -2.15 | 1.80 | 0.73 | 0.87 | — | 8244 | 996 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UWS | 26841 | 2024-03-24 | 2022-05-03 | 3.47 | 3.83 | 3.35 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 15.94 | 0.00 | 2.196 | 11.83 | 0.12 | 6.3 | 93.7 | 0.0 | -1.19 | 0.62 | 0.79 | 1.77 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 17.67 | 0.00 | 2.090 | 13.80 | 2.02 | 6.4 | 93.6 | 0.0 | -0.81 | 0.41 | 0.63 | 0.81 | 1.63 | 39416 | 4766 | 20 | 68 | 0 | 0 | 0 | logfile |
✘ | 7PLU | 13502 | 2024-03-19 | 2021-09-01 | 3.2 | 3.11 | 3.17 | 3.0 | 0.005 | 0.85 | 4.0 | 0.05 | 14.78 | 0.01 | 1.314 | 5.25 | 0.04 | 0.1 | 99.9 | 0.0 | -1.57 | 0.89 | 0.82 | 3.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23288 | 2906 | 13 | 0 | 9 | 0 | 0 | logfile |
✔ | 6TGP | 10500 | 2024-03-10 | 2019-11-17 | 4.4 | 4.64 | — | 4.3 | 0.013 | 1.90 | 1.0 | 0.13 | 12.88 | 0.01 | 2.228 | 7.38 | 2.08 | 5.2 | 94.8 | 0.0 | -3.36 | 0.45 | 0.85 | — | 4.1 | 0.002 | 0.64 | 0.0 | 0.04 | 12.53 | 0.00 | 2.295 | 14.39 | 0.00 | 2.9 | 97.1 | 0.0 | 1.45 | 1.80 | 0.45 | 0.79 | — | 1344 | 176 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LPB | 0940 | 2024-03-17 | 2020-01-09 | 3.9 | 4.04 | 3.79 | 4.0 | 0.009 | 1.05 | 0.0 | 0.06 | 15.62 | 0.01 | 2.232 | 5.61 | 1.26 | 5.2 | 94.8 | 0.0 | -3.86 | 0.59 | 0.76 | 1.49 | 4.0 | 0.004 | 0.64 | 0.0 | 0.04 | 17.30 | 0.00 | 2.145 | 12.26 | 6.13 | 4.6 | 95.4 | 0.0 | -0.14 | 0.55 | 0.65 | 0.78 | 1.51 | 17634 | 2212 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HQY | 34954 | 2024-03-17 | 2022-12-14 | 3.05 | 3.63 | 2.80 | 2.2 | 0.011 | 1.01 | 0.0 | 0.06 | 27.35 | 0.01 | 2.238 | 4.33 | 0.14 | 5.8 | 94.2 | 0.0 | -3.02 | 0.92 | 0.86 | 2.67 | 2.2 | 0.004 | 0.66 | 0.0 | 0.04 | 27.53 | 0.00 | 2.136 | 12.10 | 2.54 | 4.7 | 95.3 | 0.0 | 1.75 | 1.26 | 0.93 | 0.88 | 2.38 | 12302 | 848 | 12 | 272 | 0 | 0 | 0 | logfile |
✔ | 6QJM | 4564 | 2024-03-10 | 2019-01-24 | 3.3 | 3.49 | 1.95 | 3.4 | 0.010 | 1.01 | 0.0 | 0.07 | 8.06 | 0.01 | 2.408 | 6.17 | 0.00 | 9.1 | 90.9 | 0.0 | -2.36 | 0.38 | 0.76 | 3.31 | 3.5 | 0.003 | 0.60 | 0.0 | 0.05 | 13.63 | 0.00 | 2.152 | 6.17 | 2.86 | 7.1 | 92.9 | 0.0 | -2.38 | 1.59 | 0.33 | 0.73 | 3.53 | 846 | 111 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TEA | 10478 | 2024-03-19 | 2019-11-11 | 3.89 | 4.22 | — | 4.0 | 0.008 | 1.34 | 0.0 | 0.08 | 12.64 | 0.01 | 2.273 | 14.75 | 0.00 | 11.9 | 88.1 | 0.0 | -4.86 | 0.89 | 0.84 | 1.48 | 3.9 | 0.004 | 0.96 | 0.0 | 0.05 | 16.81 | 0.00 | 2.097 | 30.04 | 9.55 | 8.6 | 91.4 | 0.0 | -2.90 | 1.45 | 0.91 | 0.86 | 1.26 | 23328 | 3120 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Wo0 | 32637 | 2024-03-15 | 2022-01-20 | 2.7 | 2.93 | 2.56 | 2.9 | 0.007 | 0.91 | 0.0 | 0.06 | 15.45 | 0.01 | 2.538 | 5.18 | 0.00 | 3.2 | 96.8 | 0.0 | -3.84 | 0.55 | 0.81 | 5.89 | 2.9 | 0.005 | 0.58 | 0.0 | 0.05 | 16.69 | 0.00 | 2.387 | 4.10 | 0.61 | 3.2 | 96.8 | 0.0 | -2.12 | 0.62 | 0.53 | 0.85 | 5.36 | 12964 | 910 | 14 | 0 | 0 | 0 | 6622 | logfile |
✔ | 6LN9 | 0928 | 2024-03-11 | 2019-12-28 | 3.4 | 3.61 | 3.06 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 12.32 | 0.00 | 2.075 | 7.70 | 0.00 | 4.1 | 95.9 | 0.0 | -3.36 | 0.63 | 0.73 | 1.41 | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 14.89 | 0.00 | 1.273 | 10.11 | 4.06 | 4.7 | 95.3 | 0.0 | -0.48 | 0.51 | 0.62 | 0.76 | 1.24 | 7612 | 987 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8P53 | 17445 | 2024-03-17 | 2023-05-23 | 2.7 | 2.29 | 2.79 | 2.0 | 0.004 | 0.65 | 0.0 | 0.04 | 13.22 | 0.00 | 1.943 | 8.14 | 0.11 | 3.2 | 96.8 | 0.0 | -0.24 | 0.79 | 0.81 | 3.54 | 2.0 | 0.003 | 0.59 | 0.0 | 0.04 | 16.56 | 0.00 | 1.974 | 8.57 | 2.28 | 3.2 | 96.8 | 0.0 | 0.17 | 1.03 | 0.80 | 0.82 | 3.25 | 16299 | 2071 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7VZF | 32227 | 2024-03-10 | 2021-11-16 | 2.95 | 2.71 | — | 3.0 | 0.009 | 1.06 | 0.0 | 0.06 | 16.23 | 0.01 | 1.971 | 38.45 | 0.00 | 26.5 | 73.5 | 0.0 | -5.56 | 0.30 | 0.43 | -0.13 | 2.8 | 0.004 | 0.92 | 0.0 | 0.05 | 18.65 | 0.00 | 2.097 | 12.69 | 6.03 | 18.5 | 81.5 | 0.0 | -4.26 | 1.85 | 0.37 | 0.63 | -0.15 | 2628 | 363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5W7G | 8780 | 2024-03-10 | 2017-06-19 | 4.5 | 4.20 | — | 4.2 | 0.015 | 1.17 | 0.0 | 0.07 | 16.66 | 0.01 | 2.165 | 7.63 | 0.45 | 1.2 | 98.8 | 0.0 | -0.31 | 0.50 | 0.47 | — | 4.2 | 0.006 | 1.01 | 0.0 | 0.05 | 16.45 | 0.01 | 2.151 | 41.83 | 0.00 | 6.8 | 93.2 | 0.0 | -1.00 | 1.86 | 0.55 | 0.59 | — | 53508 | 5397 | 44 | 504 | 0 | 0 | 0 | logfile |
✔ | 7YK8 | 33890 | 2024-03-10 | 2022-07-22 | 2.8 | 2.62 | 1.74 | 2.8 | 0.005 | 0.66 | 0.0 | 0.06 | 11.56 | 0.00 | 2.465 | 18.20 | 0.00 | 8.5 | 91.5 | 0.0 | -3.55 | 0.46 | 0.82 | 1.92 | 2.8 | 0.003 | 0.66 | 0.0 | 0.05 | 16.81 | 0.00 | 2.247 | 7.69 | 7.37 | 8.5 | 91.5 | 0.0 | -2.87 | 1.14 | 0.44 | 0.82 | 1.95 | 3108 | 450 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M99 | 23720 | 2024-03-17 | 2021-03-30 | 3.2 | 2.95 | 3.12 | 3.2 | 0.014 | 1.53 | 0.0 | 0.10 | 17.06 | 0.01 | 1.823 | 7.28 | 0.45 | 1.8 | 98.2 | 0.0 | -0.49 | 0.52 | 0.69 | 1.97 | 3.2 | 0.005 | 0.64 | 0.0 | 0.04 | 19.56 | 0.01 | 1.858 | 7.14 | 1.73 | 3.5 | 96.5 | 0.0 | 0.58 | 2.04 | 0.59 | 0.83 | 2.36 | 17613 | 2056 | 17 | 42 | 14 | 0 | 0 | logfile |
✔ | 8oo6 | 17005 | 2024-03-10 | 2023-04-04 | 4.3 | 4.37 | 4.20 | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 20.16 | 0.00 | 2.225 | 10.88 | 0.00 | 4.2 | 95.8 | 0.0 | -0.09 | 0.88 | 0.81 | — | 4.1 | 0.003 | 0.60 | 0.0 | 0.04 | 20.10 | 0.00 | 2.228 | 10.43 | 0.00 | 5.3 | 94.7 | 0.0 | 0.25 | 1.58 | 0.89 | 0.83 | — | 5890 | 604 | 5 | 54 | 1 | 0 | 0 | logfile |
✔ | 6PoM | 20416 | 2024-03-10 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 25.63 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.23 | 0.0 | 0.06 | 27.09 | 0.01 | 1.945 | 59.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.74 | 0.74 | 0.79 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 6SST | 10305 | 2024-03-10 | 2019-09-09 | 3.4 | 3.46 | — | 3.4 | 0.009 | 0.94 | 0.0 | 0.07 | 16.79 | 0.00 | 2.430 | 5.73 | 2.13 | 10.1 | 89.9 | 0.0 | -4.47 | 0.56 | 0.80 | 6.33 | 3.4 | 0.004 | 0.65 | 0.0 | 0.05 | 15.47 | 0.00 | 2.326 | 9.86 | 3.40 | 10.6 | 89.4 | 0.0 | -4.74 | 0.40 | 0.59 | 0.84 | 5.33 | 4900 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |