Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RCV	24407	2023-04-20	2021-07-08	2.01	1.78	—	1.9	0.024	2.38	0.0	0.11	20.31	0.01	1.915	13.94	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.007	0.98	0.0	0.06	19.24	0.01	1.984	13.17	1.79	3.0	97.0	0.0	0.41	0.91	0.81	0.84	5.30	54656	5544	114	0	228	1236	0	logfile
✘	8CRS	26957	2023-04-24	2022-05-11	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17888	1998	12	0	12	1692	0	logfile
✘	7F4V	31455	2023-04-24	2021-06-21	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67641	6336	78	0	453	402	0	logfile
✔	7o6P	12739	2023-04-20	2021-04-12	2.04	2.55	—	2.1	0.008	0.59	0.0	0.05	11.73	0.00	2.140	6.08	0.93	1.8	98.2	0.0	-0.54	0.90	0.88	5.90	2.1	0.002	0.47	0.0	0.04	13.52	0.00	2.251	5.96	0.00	2.0	98.0	0.0	2.22	0.39	0.90	0.92	5.36	8276	1022	8	0	0	268	0	logfile
✘	7oY2	13108	2023-04-20	2021-06-23	2.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7166	858	7	0	7	24	0	logfile
✔	8E2D	27832	2023-04-22	2022-08-15	2.07	2.27	2.16	2.3	0.003	0.56	0.0	0.04	15.75	0.00	1.968	6.49	0.85	2.0	98.0	0.0	1.44	0.63	0.82	4.02	2.3	0.003	0.53	0.0	0.04	15.83	0.00	1.974	6.71	1.02	2.3	97.7	0.0	1.97	0.39	0.64	0.83	3.91	62460	3936	2	0	0	0	31562	logfile
✔	8D1G	27129	2023-04-24	2022-05-27	2.07	2.29	2.10	2.3	0.006	0.69	0.0	0.04	19.81	0.00	2.207	13.54	0.66	1.2	98.8	0.0	1.81	0.74	0.85	5.81	2.3	0.006	0.68	0.0	0.05	17.43	0.01	2.142	7.81	0.52	1.3	98.7	0.0	1.57	0.91	0.71	0.86	5.67	16201	1735	15	0	61	620	0	logfile
✔	7KJR	22898	2023-04-20	2020-10-26	2.08	2.52	2.15	2.4	0.006	0.84	0.0	0.05	16.31	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.53	0.0	0.04	16.24	0.00	2.088	9.90	0.99	2.1	97.9	0.0	1.24	0.40	0.66	0.87	4.76	3840	448	8	0	2	122	0	logfile
✔	7RZQ	24774	2023-04-19	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.31	0.0	0.03	15.07	0.00	2.343	5.71	0.00	0.0	100.0	0.0	5.84	0.30	0.82	0.82	2.01	2421	322	6	0	0	0	0	logfile
✔	8BC3	15961	2023-04-24	2022-10-14	2.1	2.00	2.14	2.2	0.014	2.07	0.0	0.11	17.99	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.83	5.67	2.1	0.002	0.54	0.0	0.04	15.44	0.00	2.168	4.01	0.63	0.6	99.4	0.0	1.85	0.51	0.76	0.87	5.99	16880	2170	30	0	10	500	0	logfile
✔	7SCA	25031	2023-04-20	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.55	0.0	0.04	16.60	0.00	2.121	8.28	0.87	0.9	99.1	0.0	2.87	1.09	0.79	0.85	5.28	55437	6836	116	0	54	1325	0	logfile
✔	8DBK	27287	2023-04-23	2022-06-14	2.1	2.15	2.19	2.1	0.012	1.13	2.0	0.06	18.10	0.04	1.760	5.45	1.07	3.9	96.0	0.1	0.54	0.71	0.86	6.31	2.1	0.003	1.50	0.0	0.05	16.92	0.00	1.840	5.62	1.52	3.5	96.5	0.0	0.65	0.40	0.72	0.90	6.08	14612	1868	18	0	30	12	0	logfile
✔	7QET	13940	2023-04-25	2021-12-03	2.1	2.53	2.11	2.3	0.006	0.88	0.0	0.04	13.42	0.00	2.140	1.99	2.38	2.2	97.8	0.0	1.49	0.82	0.90	3.95	2.3	0.003	0.54	0.0	0.04	14.62	0.00	2.186	3.41	1.64	1.2	98.8	0.0	3.47	0.37	0.82	0.92	3.57	19205	2256	36	0	60	305	0	logfile
✔	7SC8	25029	2023-04-20	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	15.00	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.004	0.57	0.0	0.04	16.48	0.00	2.130	8.45	0.93	1.1	98.9	0.0	2.82	0.36	0.86	0.87	4.19	56784	6836	116	0	54	2672	0	logfile
✔	7QEW	13943	2023-04-21	2021-12-03	2.1	2.62	—	2.2	0.005	0.86	0.0	0.03	11.15	0.00	2.191	3.73	2.18	3.3	96.7	0.0	1.32	0.78	0.89	4.62	2.3	0.003	0.66	0.0	0.04	14.43	0.00	2.188	5.93	1.19	3.0	97.0	0.0	2.91	1.06	0.79	0.92	3.35	9702	1128	18	0	30	234	0	logfile
✔	6X19	21993	2023-04-22	2020-05-18	2.1	2.20	2.11	2.1	0.009	1.29	6.0	0.08	14.30	0.01	2.134	12.92	1.01	2.7	97.3	0.1	-1.61	0.73	0.84	4.93	2.2	0.003	0.75	0.0	0.04	16.80	0.00	2.132	6.29	1.47	2.0	98.0	0.0	1.19	1.01	0.72	0.88	4.53	10277	1258	9	0	1	136	0	logfile
✔	7PBW	13307	2023-04-21	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.76	0.0	0.04	14.47	0.01	2.150	7.99	0.00	0.0	100.0	0.0	4.46	0.28	0.77	0.90	7.32	9500	873	54	0	81	230	0	logfile
✔	8DBE	27281	2023-04-23	2022-06-14	2.1	2.18	2.26	2.2	0.014	0.99	0.0	0.05	17.66	0.05	1.867	9.20	3.05	4.1	95.9	0.0	0.97	0.73	0.90	6.43	2.2	0.003	1.76	0.0	0.05	17.32	0.00	1.850	6.81	1.87	2.7	97.3	0.0	0.27	0.34	0.74	0.91	6.36	14982	1896	18	0	30	42	0	logfile
✔	6LXV	30007	2023-04-20	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.07	0.01	2.196	2.01	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.002	0.57	0.0	0.04	16.46	0.00	2.149	4.16	0.92	2.3	97.7	0.0	1.03	0.92	0.79	0.91	6.13	54924	6448	24	0	16	2967	0	logfile
✔	7FEB	31551	2023-04-26	2021-07-19	2.11	2.54	—	2.6	0.004	0.65	0.0	0.05	15.91	0.01	2.211	11.24	0.30	1.5	98.5	0.0	0.07	0.75	0.82	3.11	2.6	0.004	0.65	0.0	0.05	16.54	0.01	2.050	9.13	2.83	1.5	98.5	0.0	0.44	1.95	0.75	0.85	3.22	24075	3024	9	0	0	0	0	logfile

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