Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7VZR	32229	2023-07-10	2021-11-16	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21354	2266	22	0	117	6	0	logfile
✔	8A2S	15105	2023-07-07	2022-06-06	2.22	2.37	2.18	2.3	0.009	0.68	0.0	0.05	14.10	0.01	1.758	3.33	0.64	1.9	98.1	0.0	-1.13	0.71	0.87	6.45	2.3	0.003	0.60	0.0	0.05	16.41	0.00	1.907	4.99	0.84	1.4	98.6	0.0	0.79	0.82	0.72	0.89	5.97	15141	1835	15	0	15	591	0	logfile
✔	8CZi	27098	2023-07-03	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.39	0.0	0.03	15.18	0.00	2.140	5.65	0.34	0.0	100.0	0.0	5.55	0.85	0.83	0.84	1.84	2550	339	6	0	0	0	0	logfile
✔	7XiB	33201	2023-07-04	2022-04-12	2.23	2.35	2.26	2.4	0.009	0.71	0.0	0.17	18.00	0.01	2.184	6.98	4.14	3.9	96.1	0.0	-1.86	0.65	0.81	5.40	2.4	0.003	0.72	0.0	0.07	18.45	0.00	2.209	6.46	2.71	3.4	96.6	0.0	0.04	0.43	0.65	0.82	4.56	7178	815	6	24	2	196	0	logfile
✔	7UKG	26580	2023-07-04	2022-04-01	2.24	2.56	2.27	2.5	0.006	0.58	0.0	0.04	13.16	0.00	2.208	6.08	0.00	1.8	98.2	0.0	2.95	0.68	0.88	4.70	2.5	0.003	0.48	0.0	0.04	13.81	0.00	2.354	5.86	0.22	1.8	98.2	0.0	3.84	0.22	0.70	0.90	4.29	8652	1128	10	0	4	0	0	logfile
✔	8A2T	15106	2023-07-07	2022-06-06	2.24	2.35	2.17	2.3	0.004	0.56	0.0	0.04	13.20	0.00	1.880	2.50	0.32	1.9	98.1	0.0	-1.62	0.71	0.87	5.89	2.3	0.003	0.61	0.0	0.04	16.32	0.00	1.898	3.79	0.52	1.1	98.9	0.0	1.10	0.81	0.74	0.90	5.29	15046	1830	15	0	10	556	0	logfile
✔	6M3X	30073	2023-07-06	2020-03-04	2.24	2.31	—	2.3	0.006	0.81	0.0	0.05	13.95	0.01	2.222	3.45	0.37	3.2	96.8	0.0	-2.65	0.78	0.90	7.35	2.3	0.003	0.61	0.0	0.05	16.91	0.00	2.259	5.96	0.73	2.9	97.1	0.0	0.36	0.42	0.78	0.91	6.73	62387	7440	72	0	24	2243	0	logfile
✔	7XXF	33501	2023-07-14	2022-05-30	2.24	2.16	2.23	2.2	0.023	2.96	0.0	0.05	21.41	0.02	2.014	7.34	1.31	2.8	97.2	0.0	1.59	0.77	0.88	5.31	2.2	0.003	1.46	0.0	0.04	18.67	0.00	1.986	7.47	1.02	2.8	97.2	0.0	2.26	0.89	0.77	0.90	4.60	29826	3004	120	0	98	538	0	logfile
✔	8DG9	27419	2023-07-07	2022-06-23	2.24	2.40	2.33	2.5	0.004	0.63	0.0	0.05	16.95	0.00	2.116	5.15	0.91	2.7	97.3	0.0	-0.16	0.69	0.83	4.59	2.5	0.003	0.84	0.0	0.05	16.88	0.00	2.141	5.44	1.77	2.9	97.1	0.0	0.26	1.11	0.68	0.84	4.52	15450	2007	12	0	6	0	0	logfile
✔	7QRU	14124	2023-07-08	2022-01-12	2.24	2.32	2.24	2.4	0.020	2.18	9.0	0.10	14.53	0.02	2.058	6.63	2.50	2.6	97.4	0.1	-1.62	0.79	0.91	4.88	2.4	0.004	0.60	0.0	0.04	15.74	0.00	2.169	5.83	1.43	0.9	99.1	0.0	2.24	1.15	0.79	0.90	4.06	16100	1957	18	0	3	360	0	logfile
✔	8EHG	28147	2023-07-05	2022-09-14	2.24	2.24	2.25	2.3	0.003	0.53	0.0	0.04	16.09	0.00	2.291	4.70	1.44	1.5	98.5	0.0	1.13	0.74	0.83	5.20	2.4	0.003	0.55	0.0	0.04	16.76	0.00	2.229	4.04	2.16	1.2	98.8	0.0	1.61	0.20	0.72	0.84	5.39	10472	1372	4	0	0	0	0	logfile
✔	7ZHG	14731	2023-07-06	2022-04-06	2.25	2.12	2.20	2.2	0.016	0.85	3.0	0.04	13.95	0.06	1.889	2.84	1.41	3.3	96.7	0.0	0.18	0.70	0.86	5.31	2.2	0.004	1.22	0.0	0.04	16.05	0.01	1.874	3.96	0.88	2.9	97.1	0.0	0.54	0.38	0.72	0.88	4.97	64278	3601	69	1533	96	2083	0	logfile
✘	7SA3	24943	2023-07-08	2021-09-22	2.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15960	1644	19	0	79	230	0	logfile
✔	7VFD	31949	2023-07-06	2021-09-13	2.25	2.33	2.21	2.3	0.004	0.53	0.0	0.05	12.47	0.00	2.204	3.62	0.60	3.7	96.3	0.0	-0.65	0.81	0.88	6.01	2.3	0.003	0.52	0.0	0.05	15.49	0.00	2.222	3.42	0.40	1.8	98.2	0.0	0.35	1.13	0.80	0.89	5.60	13262	1623	6	0	0	350	0	logfile
✔	7TEY	25855	2023-07-10	2022-01-06	2.25	2.88	—	2.7	0.005	0.82	0.0	0.06	13.17	0.01	2.293	3.31	0.00	2.0	98.0	0.0	0.06	0.77	0.83	3.44	2.7	0.003	0.56	0.0	0.05	15.18	0.00	2.191	6.18	1.10	2.0	98.0	0.0	0.73	1.16	0.76	0.84	3.57	21867	2703	24	0	56	0	0	logfile
✔	7TF3	25860	2023-07-10	2022-01-06	2.25	2.94	—	2.8	0.005	0.82	0.0	0.06	13.08	0.01	2.287	3.03	0.00	2.0	98.0	0.0	0.09	0.79	0.83	3.63	2.7	0.004	0.60	0.0	0.05	15.15	0.00	2.157	6.64	1.44	2.4	97.6	0.0	0.72	1.86	0.79	0.84	3.55	21873	2703	24	0	56	0	0	logfile
✔	8DLo	27508	2023-07-12	2022-07-08	2.25	2.89	2.48	2.7	0.005	0.78	0.0	0.06	13.82	0.01	2.276	3.05	0.00	2.6	97.4	0.0	-0.19	0.77	0.82	3.35	2.7	0.005	0.59	0.0	0.05	15.23	0.00	2.148	8.25	0.80	3.4	96.6	0.0	-0.03	0.39	0.76	0.83	2.95	25257	3120	24	0	60	0	0	logfile
✔	7Z1T	14452	2023-07-09	2022-02-25	2.26	2.85	2.32	2.6	0.003	0.55	0.0	0.03	15.04	0.00	2.163	9.13	0.00	1.1	98.9	0.0	3.21	0.75	0.87	2.74	2.6	0.003	0.50	0.0	0.03	15.84	0.00	2.216	5.48	3.28	1.5	98.5	0.0	3.72	1.29	0.67	0.92	3.41	18492	2268	12	0	0	0	0	logfile
✔	7ZZ0	15030	2023-07-03	2022-05-25	2.26	2.63	2.22	2.1	0.004	0.71	0.0	0.05	16.82	0.00	2.149	3.28	1.96	1.9	98.1	0.0	-0.34	0.92	0.91	4.41	2.1	0.003	0.53	0.0	0.04	16.72	0.00	2.106	5.73	1.96	1.5	98.5	0.0	1.21	0.19	0.92	0.91	4.56	4387	541	1	0	2	84	0	logfile
✘	8DBY	27317	2023-07-08	2022-06-15	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16794	1998	12	0	8	770	0	logfile

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