Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XLK	22246	2021-12-01	2020-06-28	3.3	3.63	—	3.5	0.033	0.79	0.0	0.10	20.17	0.00	2.216	5.71	0.41	0.9	99.1	0.0	-2.26	0.78	0.84	2.91	3.5	0.005	0.65	0.0	0.04	20.64	0.00	1.959	12.00	0.00	0.8	99.2	0.0	-1.40	0.34	0.79	0.86	2.82	5456	536	6	46	4	0	0	logfile
✔	7N73	24218	2021-12-01	2021-06-09	2.9	3.46	2.99	3.3	0.006	0.76	0.0	0.06	13.02	0.00	1.850	7.76	0.00	2.6	97.4	0.0	1.31	0.71	0.85	2.86	3.3	0.002	0.55	0.0	0.04	14.24	0.00	1.996	5.87	0.60	2.3	97.7	0.0	1.78	0.34	0.69	0.85	2.41	7866	1036	1	0	6	3	0	logfile
✔	6WBX	21600	2021-12-01	2020-03-27	3.5	3.82	3.55	3.7	0.012	1.07	0.0	0.06	13.53	0.01	2.190	4.07	0.11	7.9	92.0	0.1	-5.51	0.77	0.86	3.70	3.7	0.012	1.24	1.0	0.05	14.10	0.01	2.163	8.02	0.11	6.4	93.6	0.1	-2.90	0.34	0.73	0.85	3.06	9170	1264	1	0	2	0	0	logfile
✔	7BC7	12141	2021-12-01	2020-12-18	3.3	3.46	3.24	3.4	0.008	0.90	0.0	0.05	14.63	0.01	2.110	12.42	0.23	9.4	90.5	0.2	-1.48	0.58	0.84	2.41	3.4	0.003	0.68	0.0	0.04	15.92	0.00	2.185	9.35	0.69	4.8	95.2	0.0	-0.04	0.34	0.58	0.85	2.51	4209	549	3	0	1	0	0	logfile
✔	6TQF	10550	2021-12-02	2019-12-16	3.5	3.81	—	3.7	0.009	0.98	0.0	0.06	15.82	0.01	2.092	3.00	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.003	0.66	0.0	0.04	15.73	0.00	1.982	2.72	0.00	2.9	97.1	0.0	-3.40	0.34	0.74	0.90	2.48	10426	1268	4	0	14	0	0	logfile
✔	7RTW	24691	2021-12-01	2021-08-15	3.23	3.74	—	3.7	0.003	0.57	0.0	0.04	15.11	0.00	2.213	9.12	0.00	3.9	96.1	0.0	2.01	0.60	0.70	0.84	3.7	0.009	1.04	0.0	0.04	17.43	0.00	2.277	8.24	0.68	3.8	96.2	0.0	2.37	0.35	0.61	0.73	0.70	5644	701	8	0	17	0	0	logfile
✔	7DDo	30655	2021-12-01	2020-10-29	3.4	3.24	—	3.2	0.002	0.53	0.0	0.04	14.10	0.00	2.062	7.30	0.00	2.5	97.5	0.0	-1.39	0.73	0.79	2.11	3.2	0.003	0.60	0.0	0.04	15.87	0.00	2.026	10.39	0.43	2.7	97.3	0.0	1.01	0.35	0.74	0.81	2.23	6468	791	4	0	5	0	0	logfile
✔	6XYP	10651	2021-12-01	2020-01-30	3.29	3.37	3.03	3.4	0.008	0.64	0.0	0.05	13.98	0.00	2.151	8.09	0.00	2.8	97.2	0.0	-5.04	0.47	0.83	4.49	3.4	0.006	0.62	0.0	0.05	15.80	0.00	2.188	4.84	0.20	2.4	97.6	0.0	-3.45	0.35	0.48	0.85	5.05	4955	725	10	0	0	0	0	logfile
✔	7S8L	24896	2021-12-01	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	2.0	0.003	0.62	0.0	0.04	15.55	0.01	2.252	3.20	1.34	3.5	96.5	0.0	1.25	0.35	0.84	0.84	3.95	8177	1096	6	0	0	0	0	logfile
✔	6ZXA	11516	2021-12-01	2020-07-29	2.38	2.34	—	2.3	0.019	3.63	0.0	0.07	20.59	0.01	2.324	10.63	5.21	12.8	87.2	0.0	-1.00	0.75	0.90	5.13	2.3	0.018	2.56	0.0	0.06	20.71	0.01	2.154	13.10	2.53	11.5	88.5	0.0	0.83	0.35	0.75	0.88	4.32	8442	791	28	0	35	0	0	logfile
✔	7V87	31792	2021-12-01	2021-08-22	3.3	3.93	—	3.6	0.003	0.59	0.0	0.04	14.38	0.00	2.167	6.50	0.00	5.4	94.6	0.0	-0.21	0.79	0.84	2.44	3.6	0.006	0.68	0.0	0.04	16.07	0.00	2.014	8.67	0.71	6.4	93.6	0.0	-0.20	0.35	0.80	0.88	2.32	6617	797	6	0	12	0	0	logfile
✔	6XMP	22260	2021-12-01	2020-06-30	3.5	4.29	3.63	4.0	0.005	0.54	0.0	0.04	13.08	0.00	2.192	6.56	0.00	2.9	97.1	0.0	-1.66	0.72	0.84	1.55	4.0	0.003	0.53	0.0	0.04	14.38	0.00	2.153	6.67	0.11	3.3	96.7	0.0	1.03	0.35	0.71	0.86	1.45	8545	1086	1	0	12	0	0	logfile
✔	6TNG	10532	2021-12-01	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.006	1.02	0.0	0.00	7.42	0.01	2.133	21.25	0.00	25.4	74.3	0.3	-3.93	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	7MJN	23879	2021-12-01	2021-04-20	3.29	4.21	—	3.7	0.004	0.83	0.0	0.05	13.35	0.01	2.295	3.30	0.00	2.4	97.6	0.0	-1.29	0.88	0.85	2.95	3.8	0.003	0.63	0.0	0.04	14.69	0.00	2.221	9.81	0.57	2.3	97.6	0.1	1.21	0.36	0.88	0.85	2.59	6526	797	4	0	5	0	0	logfile
✔	7KC2	22805	2021-12-02	2020-10-04	2.67	3.44	—	3.4	0.092	1.91	0.0	0.05	14.87	0.00	1.445	9.20	0.00	5.2	94.8	0.0	-2.73	0.76	0.82	3.71	3.4	0.004	0.60	0.0	0.05	15.52	0.00	2.220	9.15	1.92	4.1	95.9	0.0	-1.79	0.36	0.57	0.72	3.02	10192	1388	12	0	12	4	0	logfile
✔	6XEU	22150	2021-12-02	2020-06-13	3.2	3.84	—	3.7	0.008	0.82	4.0	0.06	15.45	0.01	2.387	2.63	2.83	11.3	88.7	0.0	-2.88	0.76	0.88	3.94	3.7	0.002	0.58	0.0	0.04	15.83	0.00	2.299	2.78	0.35	4.7	95.3	0.0	0.13	0.36	0.78	0.90	3.04	10544	1312	8	0	16	0	0	logfile
✔	7V84	31789	2021-12-01	2021-08-22	3.0	3.81	—	3.5	0.002	0.49	0.0	0.04	15.06	0.00	2.199	5.87	0.00	4.3	95.7	0.0	-0.37	0.82	0.87	2.88	3.5	0.003	0.59	0.0	0.05	16.32	0.00	2.178	7.41	0.57	4.7	95.3	0.0	-0.04	0.36	0.78	0.84	2.95	6636	797	9	0	13	0	0	logfile
✔	7N7P	24230	2021-12-01	2021-06-10	3.24	2.66	—	3.2	0.058	2.03	0.0	0.04	19.97	0.00	1.647	7.96	0.35	1.6	98.4	0.0	1.62	0.58	0.83	2.19	3.0	0.003	0.57	0.0	0.03	17.79	0.00	2.123	11.32	0.00	2.0	98.0	0.0	3.61	0.36	0.59	0.85	1.72	5400	626	4	0	2	0	0	logfile
✔	7RTN	24684	2021-12-01	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.03	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.002	0.56	0.0	0.04	16.51	0.00	2.269	7.42	0.00	4.3	95.7	0.0	1.39	0.36	0.31	0.78	2.76	6018	810	3	0	0	0	0	logfile
✔	7RXC	24728	2021-12-01	2021-08-22	3.2	2.84	—	3.2	0.006	0.77	0.0	0.13	14.32	0.01	2.089	9.52	0.00	2.3	97.7	0.0	1.18	0.66	0.79	2.95	3.2	0.003	0.58	0.0	0.04	15.90	0.01	2.182	8.72	0.40	2.9	97.1	0.0	1.04	0.36	0.65	0.82	2.42	9360	1178	7	0	6	0	0	logfile

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