Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T6E	25714	2023-11-13	2021-12-13	3.1	3.11	—	3.1	0.129	5.90	125.0	0.23	23.20	0.02	2.041	30.29	0.00	0.0	0.0	0.0	—	0.60	0.87	—	3.1	0.122	5.61	134.0	0.36	21.80	0.02	2.082	31.46	0.00	0.0	0.0	0.0	—	0.19	0.66	0.90	—	3480	0	60	0	300	0	0	logfile
✔	8DY9	27778	2023-11-15	2022-08-03	3.12	3.48	3.21	3.4	0.003	0.52	1.0	0.04	17.45	0.00	2.007	5.95	0.00	4.5	95.5	0.0	0.42	0.76	0.78	2.45	3.4	0.004	0.51	1.0	0.04	18.15	0.00	1.997	5.48	0.03	5.6	94.4	0.0	0.33	0.20	0.77	0.81	2.34	63435	3777	16	144	5	0	31140	logfile
✔	8D0B	27104	2023-11-20	2022-05-26	3.43	4.09	3.52	2.2	0.002	0.48	0.0	0.04	15.42	0.00	2.167	5.43	0.06	3.1	96.9	0.0	1.19	0.87	0.83	1.67	2.2	0.006	0.58	0.0	0.04	15.99	0.00	2.165	6.57	0.09	4.9	95.1	0.0	1.08	0.20	0.88	0.84	1.81	29367	3630	8	15	0	0	0	logfile
✔	7Y6P	33645	2023-11-20	2022-06-21	3.3	3.20	3.21	3.3	0.005	0.66	0.0	0.04	15.54	0.00	1.892	8.44	0.00	2.3	97.7	0.0	3.78	0.77	0.89	3.18	3.3	0.005	0.69	0.0	0.03	16.67	0.00	2.091	3.58	0.36	2.0	98.0	0.0	4.44	0.20	0.76	0.90	2.29	31428	3772	48	0	60	0	0	logfile
✔	8EPX	28534	2023-11-16	2022-10-06	3.15	3.30	3.06	3.2	0.004	0.58	0.0	0.04	24.02	0.00	1.297	7.63	4.99	5.1	94.9	0.0	-0.23	0.79	0.84	0.94	3.2	0.004	0.59	0.0	0.04	23.84	0.00	2.148	7.46	0.27	6.3	93.7	0.0	0.09	0.20	0.80	0.85	1.29	15457	1672	14	144	2	0	0	logfile
✔	8EHG	28147	2023-11-15	2022-09-14	2.24	2.24	2.25	2.3	0.003	0.53	0.0	0.04	16.09	0.00	2.291	4.70	1.44	1.5	98.5	0.0	1.13	0.74	0.83	5.20	2.4	0.003	0.55	0.0	0.04	16.76	0.00	2.229	4.04	2.16	1.2	98.8	0.0	1.61	0.20	0.72	0.84	5.39	10472	1372	4	0	0	0	0	logfile
✔	7MGM	23829	2023-11-18	2021-04-12	3.1	3.35	3.11	3.0	0.004	0.55	0.0	0.04	14.02	0.00	1.874	5.80	0.04	2.4	97.6	0.0	0.78	0.87	0.89	2.62	3.0	0.002	0.44	0.0	0.04	14.91	0.00	1.983	5.55	0.07	1.9	98.1	0.0	1.60	0.21	0.87	0.90	2.28	24079	2964	4	0	6	0	0	logfile
✔	8E49	27884	2023-11-15	2022-08-17	2.05	2.78	2.50	2.5	0.005	0.42	0.0	0.03	12.76	0.02	1.945	1.31	0.85	4.6	95.4	0.0	0.91	0.71	0.91	5.79	2.6	0.005	0.60	0.0	0.04	13.62	0.01	1.890	2.36	1.17	5.2	94.8	0.1	0.08	0.21	0.70	0.92	5.87	115871	1179	11	3016	1	0	41885	logfile
✔	7UVV	26817	2023-11-20	2022-05-02	2.5	2.67	—	2.6	0.006	0.65	0.0	0.04	15.55	0.02	1.993	5.08	2.55	2.6	97.2	0.1	0.74	0.91	0.91	3.70	2.6	0.007	0.71	0.0	0.04	15.61	0.01	2.042	4.77	3.87	3.3	96.6	0.1	0.59	0.21	0.92	0.93	3.55	138294	5500	56	4447	3	0	0	logfile
✔	7YNR	33969	2023-11-13	2022-07-31	2.9	2.79	1.55	3.2	0.003	0.46	0.0	0.05	10.05	0.00	2.424	7.49	0.00	1.7	98.3	0.0	-3.30	0.41	0.87	6.76	3.2	0.006	0.56	0.0	0.05	13.22	0.00	2.362	4.61	0.00	8.5	91.5	0.0	-2.06	0.21	0.42	0.88	6.14	2526	366	6	0	0	0	0	logfile
✔	8P6Y	17511	2023-11-13	2023-05-30	1.9	1.73	1.95	1.9	0.005	0.60	0.0	0.04	16.82	0.00	2.148	3.62	0.36	1.0	98.9	0.2	1.99	0.68	0.84	6.33	1.9	0.004	0.63	0.0	0.04	16.85	0.00	2.148	4.60	0.90	1.3	98.5	0.2	1.74	0.21	0.68	0.85	6.33	5266	630	7	0	3	158	0	logfile
✔	6YHS	10809	2023-11-20	2020-03-30	2.7	2.79	2.60	2.8	0.007	0.79	0.0	0.05	15.67	0.01	1.890	3.54	7.08	5.5	94.5	0.0	-2.86	0.79	0.88	3.87	2.8	0.005	0.68	0.0	0.04	15.53	0.01	1.866	3.68	4.33	4.6	95.3	0.0	-0.77	0.21	0.80	0.90	3.66	83514	3069	34	2800	161	0	0	logfile
✔	8E33	27855	2023-11-15	2022-08-16	2.23	2.91	2.58	2.7	0.006	0.50	0.0	0.04	13.08	0.02	1.965	2.00	0.53	4.6	95.4	0.0	0.48	0.70	0.90	5.42	2.7	0.005	0.59	0.0	0.04	13.81	0.01	1.953	3.42	1.06	5.9	94.0	0.1	0.08	0.21	0.69	0.89	5.43	115769	1179	11	3015	1	1	41830	logfile
✔	8GY2	34368	2023-11-14	2022-09-21	2.5	3.19	2.59	3.0	0.007	0.67	0.0	0.04	17.18	0.00	1.759	7.33	2.88	6.8	93.2	0.0	-0.26	0.80	0.89	4.02	3.0	0.003	0.63	0.0	0.04	17.16	0.00	2.167	6.30	2.68	6.2	93.8	0.0	-0.12	0.21	0.80	0.89	4.15	9943	1264	5	0	7	0	0	logfile
✔	8JAN	36130	2023-11-18	2023-05-06	3.3	3.48	3.09	3.4	0.003	0.53	0.0	0.04	12.83	0.00	2.199	4.25	0.00	4.2	95.8	0.0	-0.26	0.72	0.89	3.06	3.4	0.004	0.54	0.0	0.04	14.21	0.00	2.170	4.42	0.12	4.8	95.2	0.0	-0.47	0.21	0.73	0.91	2.83	75114	9834	30	0	0	0	0	logfile
✔	8CPW	16788	2023-11-21	2023-03-03	1.79	1.64	1.78	1.7	0.005	0.84	0.0	0.06	14.35	0.01	2.180	3.39	0.63	1.0	99.0	0.0	2.13	0.77	0.83	8.34	1.6	0.004	0.71	0.0	0.04	14.75	0.00	2.215	4.05	0.41	1.2	98.8	0.0	3.93	0.22	0.77	0.85	7.73	36004	4152	72	0	38	1886	0	logfile
✔	7NS3	12559	2023-11-16	2021-03-05	3.5	3.47	3.37	3.4	0.004	0.58	0.0	0.04	14.32	0.00	2.079	6.57	0.00	6.4	93.6	0.0	0.19	0.83	0.86	2.56	3.4	0.003	0.50	0.0	0.04	15.43	0.00	2.175	4.96	0.00	4.8	95.1	0.1	0.91	0.22	0.83	0.86	2.04	14445	1849	6	0	0	0	0	logfile
✔	7YK1	33883	2023-11-16	2022-07-21	3.08	2.99	2.80	3.0	0.006	0.69	0.0	0.05	20.08	0.00	2.029	5.53	0.26	5.2	94.0	0.8	-1.48	0.75	0.89	3.82	3.0	0.005	0.70	0.0	0.05	19.18	0.00	1.907	5.36	0.58	5.9	93.4	0.7	-0.42	0.22	0.74	0.88	3.69	14364	1836	12	0	24	0	0	logfile
✔	8P3P	17389	2023-11-18	2023-05-18	2.5	3.25	2.58	3.0	0.003	0.63	0.0	0.03	16.19	0.00	2.267	5.98	0.86	4.1	95.9	0.0	3.26	0.76	0.89	2.76	3.0	0.003	0.66	0.0	0.04	16.49	0.00	2.338	6.27	1.18	3.6	96.4	0.0	3.84	0.22	0.73	0.85	2.51	21224	2656	8	0	0	0	0	logfile
✔	8J5A	35984	2023-11-21	2023-04-21	1.19	1.12	1.22	1.2	0.014	1.48	0.0	0.08	13.93	0.01	1.560	8.49	3.21	0.6	99.4	0.0	3.37	0.51	0.66	8.67	1.2	0.003	0.57	0.0	0.03	14.11	0.00	1.975	14.59	2.56	1.8	98.2	0.0	5.37	0.22	0.69	0.82	8.60	56208	4128	24	0	24	3384	17040	logfile

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