Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZZ1	15031	2022-12-11	2022-05-25	2.27	2.59	2.22	2.1	0.007	0.89	0.0	0.05	18.21	0.01	2.159	4.00	2.68	2.6	97.4	0.0	-1.05	0.91	0.90	4.22	2.1	0.005	0.64	0.0	0.04	18.05	0.00	2.017	8.51	3.45	2.9	97.1	0.0	0.45	0.23	0.91	0.90	4.37	4958	618	5	0	4	55	0	logfile
✔	7UWM	26836	2022-12-11	2022-05-03	2.5	2.14	2.51	1.9	0.003	0.57	0.0	0.04	18.13	0.00	2.107	6.93	2.96	3.0	97.0	0.0	-0.69	0.80	0.79	2.42	1.9	0.002	0.53	0.0	0.04	18.42	0.00	2.115	7.00	4.39	2.6	97.4	0.0	-0.32	0.23	0.80	0.79	2.06	7972	967	9	0	9	0	0	logfile
✔	7Y5B	33615	2022-12-19	2022-06-16	4.4	4.11	4.44	4.0	0.002	0.56	0.0	0.04	14.57	0.00	1.888	7.21	0.00	2.7	97.3	0.0	1.29	0.79	0.81	—	4.0	0.002	0.56	0.0	0.04	14.60	0.00	1.921	7.53	0.00	2.7	97.2	0.0	1.36	0.23	0.79	0.81	—	35959	4838	26	0	22	0	0	logfile
✔	8AG5	15416	2022-12-13	2022-07-19	3.47	2.11	—	1.9	0.003	0.49	0.0	0.04	17.82	0.00	2.194	6.50	0.26	3.8	96.2	0.0	0.35	0.75	0.75	3.20	1.9	0.003	0.51	0.0	0.04	17.78	0.00	2.187	7.52	0.26	4.0	96.0	0.0	0.53	0.23	0.76	0.78	2.95	13762	1703	4	0	0	0	0	logfile
✔	7ZZ2	15032	2022-12-11	2022-05-25	2.48	2.80	2.37	2.1	0.005	0.76	0.0	0.05	17.25	0.01	2.132	4.32	3.27	2.2	97.8	0.0	-0.30	0.90	0.89	3.91	2.2	0.003	0.51	0.0	0.04	17.24	0.00	2.038	6.31	3.49	1.9	98.1	0.0	1.11	0.23	0.90	0.90	3.86	4366	541	1	0	3	57	0	logfile
✔	7VD8	31910	2022-12-20	2021-09-06	1.96	1.42	2.01	1.7	0.002	0.54	0.0	0.04	16.17	0.00	2.013	3.17	0.03	2.2	97.8	0.0	5.39	0.75	0.80	7.92	1.7	0.002	0.55	0.0	0.04	16.50	0.00	2.001	2.61	0.05	1.5	98.5	0.0	5.41	0.23	0.74	0.80	8.03	38201	4128	72	0	329	2472	0	logfile
✔	7NKH	12439	2022-12-21	2021-02-18	2.78	2.86	—	2.8	0.002	0.50	0.0	0.04	14.54	0.00	2.013	3.97	0.00	2.1	97.8	0.1	1.32	0.84	0.88	4.82	2.8	0.004	0.51	0.0	0.04	15.32	0.00	1.731	4.04	0.21	2.1	97.9	0.1	1.28	0.23	0.84	0.90	4.67	45277	2959	18	0	11	16	22565	logfile
✔	7VB7	31874	2022-12-16	2021-08-30	2.4	2.41	—	2.4	0.007	0.77	1.0	0.05	16.55	0.01	1.988	8.40	1.28	3.0	96.9	0.1	0.48	0.76	0.90	5.52	2.4	0.004	0.63	0.0	0.05	16.86	0.01	2.065	6.61	1.78	3.3	96.6	0.0	0.48	0.23	0.77	0.92	5.52	29279	3543	45	0	19	736	0	logfile
✔	7UZV	26919	2022-12-12	2022-05-09	2.5	2.29	2.44	2.3	0.003	0.58	0.0	0.04	19.05	0.00	1.944	3.69	2.84	1.4	98.3	0.3	1.78	0.62	0.84	3.61	2.3	0.003	0.56	0.0	0.04	19.03	0.00	1.930	5.65	3.45	2.1	97.7	0.2	1.28	0.23	0.60	0.85	3.87	9274	584	4	0	0	63	4592	logfile
✔	7UB0	26433	2022-12-15	2022-03-14	3.31	3.57	3.27	3.4	0.003	0.47	0.0	0.04	13.05	0.00	2.205	5.06	0.04	2.0	98.0	0.0	-0.12	0.85	0.86	3.45	3.4	0.004	0.49	0.0	0.04	13.94	0.00	2.159	5.24	0.15	2.5	97.5	0.0	0.29	0.23	0.86	0.88	3.33	24993	3109	16	0	50	0	0	logfile
✔	7ZGR	14712	2022-12-13	2022-04-04	2.6	3.01	2.54	2.8	0.003	0.56	0.0	0.05	14.68	0.00	2.181	8.81	1.24	5.7	94.1	0.2	-0.53	0.82	0.92	4.71	2.8	0.003	0.57	0.0	0.05	15.46	0.00	2.181	9.16	2.42	6.1	93.8	0.2	-0.82	0.23	0.82	0.92	4.70	14505	1819	7	4	2	0	0	logfile
✔	8B3J	15830	2022-12-11	2022-09-16	3.1	3.34	3.18	3.3	0.005	0.63	0.0	0.05	15.71	0.00	2.144	7.61	0.00	7.6	92.4	0.0	-2.49	0.44	0.88	3.25	3.3	0.005	0.63	0.0	0.05	16.25	0.00	2.127	7.16	0.32	8.2	91.8	0.0	-2.31	0.24	0.44	0.88	3.00	5688	718	3	0	0	0	0	logfile
✔	7ZD6	14637	2022-12-13	2022-03-29	3.16	3.35	—	3.2	0.006	0.80	0.0	1.03	15.73	0.01	2.184	5.28	0.27	3.1	96.9	0.0	-0.24	0.93	0.91	2.61	3.2	0.009	1.57	0.0	0.31	15.90	0.00	2.059	7.68	0.21	3.3	96.7	0.0	1.13	0.24	0.92	0.90	2.52	66748	8160	63	0	38	0	0	logfile
✔	7QUN	14149	2022-12-14	2022-01-18	2.1	2.22	—	2.2	0.005	0.72	0.0	0.05	14.59	0.00	2.230	4.82	0.88	2.1	97.9	0.0	0.29	0.63	0.77	5.98	2.2	0.004	0.80	0.0	0.05	14.98	0.01	2.229	2.20	0.83	2.3	97.7	0.0	0.00	0.24	0.74	0.87	6.39	21094	2773	8	0	4	0	0	logfile
✔	7V0M	26944	2022-12-11	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	4.65	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.002	0.48	0.0	0.04	18.25	0.00	2.193	6.29	2.58	3.3	96.7	0.0	1.93	0.24	0.55	0.88	4.32	3724	483	4	0	0	60	0	logfile
✔	7UWQ	26838	2022-12-14	2022-05-03	3.05	3.55	3.19	3.5	0.005	0.57	0.0	0.04	13.81	0.00	2.313	3.47	0.00	3.0	97.0	0.0	-0.63	0.70	0.86	3.23	3.5	0.003	0.52	0.0	0.04	15.11	0.00	2.307	4.55	0.00	2.4	97.6	0.0	0.42	0.24	0.72	0.87	2.49	20538	2598	6	0	0	0	0	logfile
✔	7NJS	12417	2022-12-15	2021-02-17	2.46	2.50	—	2.2	0.002	0.50	0.0	0.04	16.68	0.00	1.978	4.15	1.22	1.7	98.3	0.0	2.22	0.85	0.88	4.05	2.2	0.005	0.54	0.0	0.04	16.79	0.00	1.664	4.77	1.59	2.5	97.5	0.0	1.80	0.24	0.86	0.90	4.20	74642	4932	31	0	11	16	37346	logfile
✔	7UZQ	26916	2022-12-14	2022-05-09	2.17	2.05	2.16	2.1	0.006	0.92	0.0	0.05	16.21	0.01	2.215	4.98	2.27	1.8	98.0	0.2	2.16	0.68	0.87	5.59	2.1	0.004	0.63	0.0	0.04	16.13	0.00	2.124	5.96	2.27	1.9	98.0	0.1	1.73	0.24	0.69	0.88	5.85	20617	1315	10	0	4	235	10214	logfile
✔	7RZT	24777	2022-12-11	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.54	0.00	2.332	5.44	0.35	0.0	100.0	0.0	6.21	0.24	0.80	0.83	3.03	2451	324	6	0	0	0	0	logfile
✔	7NL0	12453	2022-12-12	2021-02-19	3.5	3.08	—	3.0	0.006	0.71	0.0	0.04	29.75	0.00	2.147	12.27	0.00	4.1	95.9	0.0	0.67	0.78	0.81	3.10	3.1	0.003	0.60	0.0	0.04	30.05	0.00	2.226	11.20	0.16	2.7	97.3	0.0	2.26	0.24	0.78	0.81	2.84	11363	755	10	262	0	0	0	logfile

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