Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WUG	32830	2022-12-13	2022-02-08	3.3	3.43	—	3.4	0.004	0.69	0.0	0.05	13.45	0.00	2.231	3.22	0.11	4.1	95.8	0.0	-0.52	0.79	0.86	2.55	3.4	0.002	0.50	0.0	0.04	14.90	0.00	2.167	5.37	0.22	3.2	96.8	0.0	1.47	0.28	0.78	0.87	1.90	17515	2239	5	0	0	0	0	logfile
✔	7UTN	26782	2022-12-11	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	18.57	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.55	0.0	0.03	18.50	0.00	2.168	7.85	0.58	1.3	98.7	0.0	0.93	0.28	0.82	0.85	3.82	8003	397	4	228	0	0	0	logfile
✔	7PBW	13307	2022-12-12	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.78	0.0	0.04	14.65	0.01	2.138	7.63	0.15	0.0	100.0	0.0	4.36	0.28	0.77	0.90	7.37	9500	873	54	0	81	230	0	logfile
✔	7ZDH	14648	2022-12-13	2022-03-29	3.46	3.63	—	3.4	0.005	0.77	0.0	1.03	15.79	0.01	2.238	5.67	0.28	3.1	96.9	0.0	-0.39	0.92	0.89	2.07	3.4	0.008	1.56	0.0	0.31	16.10	0.00	2.122	9.32	0.33	3.3	96.6	0.0	0.94	0.28	0.91	0.88	2.12	67219	8227	66	0	35	0	0	logfile
✔	7TMP	25998	2022-12-16	2022-01-19	3.3	3.47	—	3.4	0.004	0.54	0.0	0.04	12.38	0.00	1.989	8.96	0.38	3.5	96.5	0.1	1.23	0.78	0.84	3.41	3.4	0.004	0.56	0.0	0.04	14.10	0.00	1.901	8.86	0.17	3.4	96.5	0.0	1.17	0.28	0.79	0.86	2.99	32105	4805	16	0	2	0	0	logfile
✔	7ZDJ	14651	2022-12-13	2022-03-29	3.25	3.36	—	3.3	0.005	0.77	0.0	1.03	16.19	0.01	2.195	5.34	0.27	2.8	97.2	0.0	-0.38	0.92	0.91	2.70	3.3	0.009	1.58	0.0	0.31	16.31	0.00	1.425	8.24	0.31	3.1	96.9	0.0	1.03	0.28	0.91	0.90	2.59	65812	8160	55	0	16	0	0	logfile
✔	7K3V	22657	2022-12-20	2020-09-14	1.34	1.44	—	1.4	0.005	0.79	0.0	0.04	14.68	0.00	0.211	3.06	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.79	0.0	0.05	14.93	0.01	1.973	2.14	0.00	1.2	98.8	0.0	3.77	0.28	0.73	0.83	8.91	38406	4128	72	0	334	2672	0	logfile
✔	7BC6	12140	2022-12-11	2020-12-18	3.2	3.48	3.20	3.4	0.008	0.90	0.0	0.05	13.65	0.01	2.145	9.76	0.92	7.0	93.0	0.0	-1.77	0.64	0.85	2.92	3.4	0.003	0.63	0.0	0.04	15.29	0.00	2.201	7.85	0.23	4.2	95.8	0.0	0.39	0.28	0.54	0.82	2.09	4178	549	2	0	0	0	0	logfile
✔	7P7M	13240	2022-12-19	2021-07-19	3.2	3.30	—	3.0	0.005	0.87	0.0	1.47	14.32	0.01	2.214	7.11	0.39	2.4	97.6	0.0	-0.55	0.91	0.87	2.27	3.0	0.011	2.20	0.0	0.44	14.83	0.00	2.105	12.26	0.21	2.8	97.2	0.0	1.02	0.28	0.91	0.87	2.31	37390	4720	25	0	26	0	0	logfile
✔	7M1Q	23618	2022-12-13	2021-03-14	2.92	3.52	—	3.3	0.003	0.94	0.0	0.04	13.55	0.00	2.049	8.43	0.08	7.6	92.2	0.2	0.03	0.72	0.83	2.79	3.2	0.003	0.75	0.0	0.04	14.22	0.00	1.999	8.81	0.83	7.4	92.5	0.1	0.20	0.28	0.72	0.85	2.52	13780	1911	4	0	16	0	0	logfile
✔	7RTU	24689	2022-12-11	2021-08-15	3.89	4.06	—	4.1	0.003	0.51	0.0	0.04	14.84	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.004	0.56	0.0	0.04	16.78	0.00	2.208	7.11	0.16	2.8	97.2	0.0	4.06	0.28	0.62	0.73	0.11	5962	754	6	0	12	0	0	logfile
✔	7FCi	31526	2022-12-11	2021-07-14	3.3	3.20	3.10	3.4	0.003	0.60	0.0	0.04	16.43	0.01	2.250	7.53	4.55	3.6	96.4	0.0	0.59	0.52	0.76	2.38	3.4	0.003	0.63	0.0	0.04	16.21	0.01	2.271	8.42	0.00	3.0	97.0	0.0	0.51	0.28	0.67	0.87	2.34	5613	734	3	0	0	0	0	logfile
✔	7NNT	12483	2022-12-11	2021-02-25	3.4	3.53	3.50	3.5	0.005	0.66	0.0	0.05	13.72	0.00	2.218	6.31	0.00	2.2	97.8	0.0	-0.55	0.67	0.82	2.48	3.5	0.004	0.55	0.0	0.04	15.49	0.00	2.217	7.86	0.00	1.9	98.1	0.0	0.48	0.28	0.68	0.84	1.94	7666	979	4	0	0	0	0	logfile
✔	7RQZ	24641	2022-12-18	2021-08-08	3.32	3.07	—	3.3	0.011	0.96	0.0	0.06	17.06	0.00	2.073	6.78	0.00	4.8	95.2	0.0	0.73	0.59	0.73	1.63	3.3	0.003	0.45	0.0	0.03	16.29	0.00	2.107	5.24	0.00	3.8	96.2	0.0	1.03	0.28	0.60	0.76	1.54	32740	2128	8	0	20	0	15608	logfile
✔	7V7G	31770	2022-12-15	2021-08-21	3.1	3.93	—	3.3	0.003	0.55	0.0	0.05	13.62	0.00	2.168	7.91	0.04	5.6	94.3	0.1	-0.14	0.87	0.85	2.49	3.3	0.003	0.53	0.0	0.05	15.09	0.00	2.198	8.25	0.15	4.7	95.2	0.1	-0.05	0.28	0.88	0.85	2.07	25461	3114	39	0	81	0	0	logfile
✔	7VQQ	32092	2022-12-11	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.50	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.004	0.72	0.0	0.04	12.71	0.00	2.270	1.38	0.91	4.1	95.9	0.0	-4.95	0.28	0.48	0.87	4.50	1968	273	3	0	0	0	0	logfile
✔	8E9H	27964	2022-12-19	2022-08-26	2.7	3.77	2.71	2.9	0.005	0.62	0.0	0.10	11.74	0.01	1.727	9.45	0.03	3.9	96.0	0.2	1.08	0.82	0.87	3.82	2.9	0.003	0.58	0.0	0.04	13.38	0.00	2.019	11.98	0.69	3.2	96.7	0.1	1.43	0.28	0.82	0.90	2.96	36670	5058	22	0	14	0	0	logfile
✔	7V2R	31647	2022-12-14	2021-08-09	2.6	2.62	—	2.6	0.008	0.91	13.0	0.06	17.44	0.01	1.360	9.91	1.24	3.6	96.2	0.1	1.07	0.78	0.87	3.78	2.6	0.002	0.55	0.0	0.04	17.12	0.00	2.171	7.30	1.65	3.7	96.3	0.0	1.23	0.29	0.79	0.89	3.52	68260	8270	68	0	47	0	0	logfile
✔	7UKH	26581	2022-12-12	2022-04-01	2.33	2.55	2.38	2.5	0.004	0.61	0.0	0.04	17.88	0.00	2.035	7.98	1.80	2.9	97.1	0.0	0.99	0.77	0.85	3.75	2.5	0.003	0.52	0.0	0.04	18.14	0.00	2.197	6.59	1.25	2.9	97.1	0.0	1.69	0.29	0.75	0.86	3.77	12340	1536	16	0	16	0	0	logfile
✔	7UL5	26592	2022-12-11	2022-04-03	3.1	3.32	3.08	3.3	0.004	0.64	0.0	0.04	11.76	0.01	2.404	3.68	0.00	3.1	96.9	0.0	-1.07	0.64	0.85	3.67	3.3	0.003	0.52	0.0	0.04	13.36	0.00	2.338	1.47	0.37	1.4	98.6	0.0	2.78	0.29	0.65	0.87	3.19	2773	371	2	0	0	0	0	logfile

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