Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EAZ	31047	2022-04-07	2021-03-08	3.5	4.16	—	4.0	0.003	0.60	0.0	0.05	13.88	0.00	2.146	8.23	0.00	5.3	94.7	0.0	-1.15	0.79	0.77	2.17	4.0	0.003	0.59	0.0	0.05	15.26	0.00	2.124	8.03	0.07	5.1	94.8	0.0	-0.76	0.30	0.81	0.79	2.00	24956	3051	38	0	82	0	0	logfile
✔	7oK0	12960	2022-04-07	2021-05-17	2.9	3.35	2.78	3.2	0.021	0.93	0.0	0.22	12.91	0.00	2.038	5.45	0.00	3.7	96.3	0.0	0.12	0.78	0.85	3.19	3.2	0.003	0.74	0.0	0.05	15.25	0.00	1.778	6.16	0.99	3.7	96.3	0.0	0.18	0.31	0.78	0.86	2.96	25636	3234	18	0	8	0	0	logfile
✔	6o0Y	0584	2022-04-05	2019-02-17	3.37	4.01	—	3.7	0.005	0.74	0.0	0.05	16.71	0.01	2.272	2.52	0.37	5.5	94.5	0.0	-4.11	0.85	0.88	2.93	3.7	0.004	0.58	0.0	0.04	16.91	0.00	2.074	5.97	0.12	4.8	95.2	0.0	-0.28	0.31	0.85	0.88	2.53	11828	1146	5	150	0	0	0	logfile
✔	7K0o	22605	2022-04-06	2020-09-04	3.1	3.53	—	3.5	0.006	0.75	0.0	0.05	12.90	0.00	2.161	5.84	0.21	2.6	97.4	0.0	0.95	0.70	0.82	3.00	3.5	0.003	0.52	0.0	0.04	14.40	0.00	2.237	5.84	0.05	2.4	97.6	0.0	1.48	0.31	0.70	0.83	2.77	18558	2342	14	0	14	0	0	logfile
✔	7NKQ	12446	2022-04-05	2021-02-18	2.98	3.25	—	3.1	0.004	0.49	0.0	0.04	13.52	0.00	2.018	7.16	0.00	2.7	97.3	0.0	1.39	0.81	0.81	2.98	3.1	0.003	0.48	0.0	0.04	15.76	0.00	2.010	7.06	0.87	2.3	97.7	0.0	2.24	0.31	0.82	0.84	2.58	10621	714	8	0	0	0	5312	logfile
✔	7QL5	14064	2022-04-06	2021-12-19	2.5	2.78	2.57	2.8	0.007	0.88	2.0	0.05	14.92	0.00	2.199	8.49	1.03	3.7	96.3	0.0	0.95	0.70	0.87	4.71	2.8	0.003	0.52	0.0	0.04	15.13	0.00	2.136	8.32	1.42	3.3	96.7	0.0	1.22	0.31	0.73	0.89	4.40	17028	1989	19	0	50	2	0	logfile
✔	7TL9	25984	2022-04-07	2022-01-18	3.5	3.83	3.52	3.5	0.004	0.70	0.0	0.06	13.24	0.01	2.260	3.60	0.00	3.9	96.1	0.0	-0.78	0.85	0.83	2.56	3.5	0.005	0.56	0.0	0.05	14.19	0.00	2.173	7.14	0.30	4.7	95.3	0.0	0.15	0.31	0.85	0.84	2.39	25016	3083	24	0	60	0	0	logfile
✔	7TF8	25865	2022-04-07	2022-01-06	3.36	3.60	3.29	3.4	0.004	0.70	0.0	0.05	11.82	0.01	2.280	2.75	0.07	3.4	96.6	0.0	-0.90	0.85	0.85	2.93	3.4	0.003	0.50	0.0	0.04	12.96	0.00	2.138	5.82	0.04	3.0	97.0	0.0	0.17	0.31	0.86	0.88	2.69	25732	3153	22	0	78	0	0	logfile
✔	6YY0	11001	2022-04-05	2020-05-04	3.23	3.34	3.07	3.3	0.006	0.68	0.0	0.04	15.27	0.00	1.847	8.18	0.00	8.4	91.6	0.0	-0.84	0.72	0.84	2.97	3.3	0.005	0.66	0.0	0.04	16.08	0.00	1.750	6.31	0.28	4.9	95.1	0.0	0.05	0.31	0.73	0.86	2.67	61162	3926	25	0	11	17	30826	logfile
✔	6XEY	22156	2022-04-07	2020-06-14	3.25	3.61	3.09	2.1	0.005	0.81	1.0	0.05	12.58	0.01	2.265	3.61	0.26	5.1	94.8	0.1	-1.87	0.88	0.83	3.34	2.1	0.003	0.57	0.0	0.04	13.62	0.00	2.140	7.21	0.18	5.2	94.8	0.0	-0.57	0.31	0.89	0.85	2.45	28482	3788	24	0	63	0	0	logfile
✔	7V7i	31772	2022-04-09	2021-08-21	3.3	4.09	—	3.8	0.005	0.59	0.0	0.05	13.45	0.00	2.128	8.27	0.00	5.4	94.5	0.2	-0.23	0.86	0.85	2.37	3.8	0.004	0.57	0.0	0.04	14.85	0.00	1.991	7.27	0.18	5.6	94.3	0.1	-0.25	0.31	0.87	0.87	1.93	51072	6228	84	0	174	0	0	logfile
✔	7V7J	31773	2022-04-09	2021-08-21	3.4	4.17	—	3.8	0.004	0.56	0.0	0.05	13.55	0.00	2.144	9.60	0.00	6.1	93.8	0.1	-0.39	0.86	0.85	2.06	3.8	0.004	0.57	0.0	0.04	14.98	0.00	2.137	8.87	0.18	5.9	94.0	0.1	-0.39	0.31	0.87	0.87	1.85	51072	6228	84	0	174	0	0	logfile
✔	7EDG	31070	2022-04-07	2021-03-16	3.2	3.75	—	3.7	0.003	0.62	0.0	0.05	13.86	0.00	1.362	6.89	0.45	6.7	92.9	0.4	-1.02	0.79	0.80	2.17	3.7	0.004	0.58	0.0	0.04	15.17	0.00	2.160	6.87	0.23	6.7	93.1	0.2	-0.79	0.31	0.80	0.82	1.89	24715	3023	36	0	79	0	0	logfile
✔	7K78	22696	2022-04-05	2020-09-22	3.1	3.20	—	3.2	0.004	0.69	0.0	0.04	27.09	0.01	2.149	8.43	0.20	2.7	97.3	0.0	0.24	0.73	0.85	2.54	3.2	0.007	0.87	0.0	0.04	26.78	0.01	1.989	7.59	0.10	3.0	97.0	0.0	1.53	0.31	0.74	0.86	2.30	14125	1198	12	232	0	0	0	logfile
✔	7K3V	22657	2022-04-08	2020-09-14	1.34	1.44	—	1.4	0.005	0.79	0.0	0.04	14.68	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.76	0.0	0.04	14.89	0.01	1.975	1.80	0.00	1.2	98.8	0.0	3.84	0.31	0.73	0.83	8.91	38406	4128	72	0	334	2672	0	logfile
✔	7K0i	22598	2022-04-05	2020-09-04	3.3	3.75	—	3.7	0.005	0.64	0.0	0.05	12.84	0.00	2.222	6.26	0.25	4.0	96.0	0.0	0.10	0.72	0.81	2.93	3.7	0.003	0.52	0.0	0.04	14.14	0.00	2.012	6.09	0.12	2.6	97.4	0.0	0.65	0.31	0.76	0.83	2.25	15366	1954	10	0	6	0	0	logfile
✔	7SMM	25202	2022-04-06	2021-10-26	2.5	2.86	—	2.7	0.005	0.72	0.0	0.04	14.54	0.00	2.099	3.47	0.00	4.1	95.9	0.0	1.36	0.80	0.86	4.48	2.7	0.002	0.48	0.0	0.04	14.92	0.00	2.266	4.98	1.07	3.2	96.8	0.0	1.88	0.31	0.81	0.88	4.00	17256	2030	20	0	39	63	0	logfile
✔	7L6U	23208	2022-04-05	2020-12-23	3.3	3.73	3.39	3.7	0.009	0.79	0.0	0.05	14.09	0.01	2.365	6.06	0.72	8.7	91.3	0.0	-1.06	0.71	0.83	3.27	3.7	0.006	0.66	0.0	0.05	15.33	0.00	2.210	7.17	0.14	6.8	93.2	0.0	-0.04	0.32	0.72	0.85	3.20	12675	1555	5	0	0	0	0	logfile
✔	7N73	24218	2022-04-04	2021-06-09	2.9	3.46	2.99	3.3	0.006	1.27	0.0	0.06	13.02	0.00	1.850	7.76	0.00	2.6	97.4	0.0	1.31	0.71	0.85	2.86	3.3	0.003	0.84	0.0	0.04	14.36	0.00	2.053	5.74	0.84	2.2	97.8	0.0	1.76	0.32	0.69	0.85	2.56	7866	1036	1	0	6	3	0	logfile
✔	7F67	31475	2022-04-08	2021-06-24	3.59	4.25	—	3.8	0.002	0.53	0.0	0.04	12.72	0.00	2.187	8.17	0.09	4.9	95.1	0.0	0.36	0.87	0.84	2.31	3.8	0.003	0.58	0.0	0.04	14.22	0.00	2.176	9.58	0.39	5.7	94.3	0.0	0.53	0.32	0.87	0.84	1.99	37725	5358	18	0	28	0	0	logfile

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