Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PBW	13307	2023-04-21	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.76	0.0	0.04	14.47	0.01	2.150	7.99	0.00	0.0	100.0	0.0	4.46	0.28	0.77	0.90	7.32	9500	873	54	0	81	230	0	logfile
✔	7W4G	32304	2023-04-25	2021-11-27	3.1	3.14	—	3.1	0.007	0.82	0.0	0.04	18.13	0.01	2.149	7.57	0.24	3.7	96.2	0.1	1.04	0.79	0.88	3.09	3.1	0.002	0.53	0.0	0.04	17.13	0.00	2.115	7.19	0.22	3.9	96.1	0.0	1.29	0.28	0.79	0.88	2.98	68260	8270	68	0	47	0	0	logfile
✔	7UTN	26782	2023-04-20	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	18.57	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.56	0.0	0.03	18.52	0.00	2.158	8.00	0.58	1.8	98.2	0.0	0.95	0.28	0.82	0.85	3.82	8003	397	4	228	0	0	0	logfile
✔	7ZRK	14917	2023-04-22	2022-05-04	3.1	2.68	3.17	3.0	0.005	0.77	0.0	0.05	15.75	0.01	2.251	6.83	0.00	4.5	95.5	0.0	-0.25	0.63	0.81	2.05	3.0	0.003	0.56	0.0	0.04	16.08	0.00	2.173	9.19	0.00	3.6	96.4	0.0	0.99	0.28	0.62	0.83	2.15	11050	1450	6	0	15	0	0	logfile
✔	7UKH	26581	2023-04-22	2022-04-01	2.33	2.55	2.38	2.5	0.004	0.61	0.0	0.04	17.88	0.00	2.035	7.98	1.80	2.9	97.1	0.0	0.99	0.77	0.85	3.75	2.5	0.003	0.54	0.0	0.04	18.19	0.00	2.189	7.26	1.41	2.6	97.4	0.0	1.49	0.29	0.75	0.86	3.77	12340	1536	16	0	16	0	0	logfile
✔	8EAS	27984	2023-04-27	2022-08-29	2.6	2.77	2.60	2.8	0.006	0.64	0.0	0.04	12.91	0.00	2.044	9.00	0.00	1.4	98.6	0.0	1.65	0.67	0.83	4.09	2.8	0.003	0.51	0.0	0.04	15.42	0.00	2.172	9.43	1.04	1.1	98.9	0.0	2.33	0.29	0.66	0.84	3.39	24802	3241	18	0	39	0	0	logfile
✔	7M1Q	23618	2023-04-23	2021-03-14	2.92	3.52	—	3.3	0.004	0.97	0.0	0.05	13.85	0.00	2.049	8.31	0.08	7.6	92.2	0.2	0.03	0.72	0.83	2.79	3.2	0.003	0.74	0.0	0.04	14.40	0.00	2.012	8.58	0.91	7.9	92.0	0.1	0.22	0.29	0.72	0.85	2.44	13780	1911	4	0	16	0	0	logfile
✔	7X7A	33040	2023-04-21	2022-03-09	3.2	3.65	3.23	3.6	0.002	0.49	0.0	0.04	15.25	0.00	2.134	8.04	0.00	5.1	94.8	0.2	-0.24	0.78	0.82	3.29	3.6	0.003	0.53	0.0	0.04	16.40	0.00	2.090	8.85	0.10	5.7	94.1	0.2	0.14	0.29	0.78	0.84	2.54	10278	1241	3	33	4	0	0	logfile
✔	7BC6	12140	2023-04-20	2020-12-18	3.2	3.48	3.20	3.4	0.008	0.90	0.0	0.05	13.65	0.01	2.145	9.76	0.92	7.0	93.0	0.0	-1.77	0.64	0.85	2.92	3.4	0.004	0.65	0.0	0.04	15.20	0.00	2.200	8.93	0.46	4.2	95.8	0.0	0.13	0.29	0.59	0.84	1.99	4178	549	2	0	0	0	0	logfile
✔	7W2K	32263	2023-04-23	2021-11-24	2.9	3.00	—	3.0	0.007	0.77	2.0	0.04	17.96	0.01	2.125	9.55	1.51	3.6	96.3	0.1	1.00	0.80	0.88	3.00	3.0	0.003	0.56	0.0	0.04	17.48	0.00	2.170	8.41	2.04	3.6	96.3	0.0	0.96	0.29	0.79	0.88	2.90	66522	8140	66	0	37	0	0	logfile
✔	8ASW	15623	2023-04-27	2022-08-21	3.96	3.82	4.00	3.5	0.005	0.75	0.0	0.04	18.49	0.00	2.061	19.48	0.71	10.5	89.2	0.2	-2.15	0.87	0.78	1.38	3.5	0.003	0.60	0.0	0.04	18.51	0.00	2.130	15.65	0.20	8.7	91.2	0.2	-1.86	0.29	0.87	0.78	1.22	24781	2897	6	73	2	0	0	logfile
✔	8E57	27905	2023-04-24	2022-08-20	2.8	2.97	2.82	3.0	0.005	0.60	0.0	0.12	15.51	0.00	2.214	5.98	0.66	4.2	95.8	0.0	0.54	0.61	0.83	2.94	3.0	0.002	0.62	0.0	0.06	16.02	0.00	2.208	6.53	1.56	4.6	95.4	0.0	0.27	0.29	0.63	0.84	2.71	18449	2247	12	0	28	0	0	logfile
✔	7MU1	24001	2023-04-27	2021-05-14	3.3	3.25	—	3.2	0.006	0.65	0.0	0.04	13.49	0.00	2.078	13.28	0.43	3.4	96.6	0.0	0.09	0.86	0.89	3.34	3.2	0.002	0.53	0.0	0.04	15.01	0.00	2.317	7.87	0.00	4.3	95.7	0.0	1.05	0.29	0.86	0.91	3.05	130320	15840	60	0	60	0	0	logfile
✔	7W1V	32257	2023-04-25	2021-11-20	3.0	3.04	—	3.0	0.008	0.81	1.0	0.04	18.73	0.01	2.140	8.28	1.69	3.1	96.9	0.0	1.09	0.78	0.87	3.16	3.0	0.003	0.55	0.0	0.04	17.92	0.00	2.143	7.74	2.51	3.4	96.5	0.0	1.09	0.29	0.78	0.87	3.11	68209	8270	67	0	46	0	0	logfile
✔	8DL7	27498	2023-04-20	2022-07-07	2.7	3.86	2.72	3.3	0.005	0.84	3.0	0.05	16.37	0.00	2.238	7.20	2.90	4.5	95.3	0.2	1.47	0.75	0.84	2.18	3.3	0.003	0.79	2.0	0.04	15.96	0.00	2.171	5.78	1.71	3.6	96.3	0.1	1.75	0.29	0.75	0.84	2.46	6586	907	6	0	6	1	0	logfile
✔	7WBL	32405	2023-04-22	2021-12-17	3.4	3.46	—	3.5	0.004	0.60	0.0	0.04	15.35	0.00	2.158	6.95	0.72	3.6	96.1	0.4	0.52	0.67	0.77	2.33	3.5	0.002	0.53	0.0	0.04	16.73	0.00	2.187	6.00	0.29	3.0	96.8	0.1	1.25	0.29	0.67	0.79	1.67	6484	791	3	0	5	0	0	logfile
✔	7SK8	25176	2023-04-22	2021-10-19	3.3	3.55	—	3.5	0.009	0.88	0.0	0.22	14.30	0.00	2.265	2.62	0.00	5.2	94.8	0.0	-0.08	0.70	0.83	3.30	3.5	0.003	0.48	0.0	0.04	15.06	0.00	2.153	4.37	0.00	5.2	94.8	0.0	0.17	0.29	0.69	0.83	3.37	13389	835	7	0	8	0	6513	logfile
✔	8GU6	34270	2023-04-23	2022-09-10	3.1	3.33	3.14	3.4	0.002	0.53	0.0	0.04	17.38	0.00	2.091	13.08	0.14	5.6	94.4	0.0	-0.34	0.70	0.79	2.37	3.3	0.003	0.54	0.0	0.04	17.28	0.00	2.132	12.23	0.36	6.0	94.0	0.0	-0.12	0.29	0.69	0.79	2.29	15261	1870	5	50	4	0	0	logfile
✔	7XKP	33259	2023-04-26	2022-04-20	3.0	3.46	3.07	3.2	0.002	0.48	0.0	0.04	13.19	0.00	2.089	3.88	0.00	2.4	97.6	0.0	1.63	0.84	0.90	3.37	3.2	0.003	0.51	0.0	0.04	14.77	0.00	2.003	4.64	0.90	2.7	97.2	0.0	1.43	0.29	0.84	0.91	3.17	24105	3128	8	0	2	0	0	logfile
✔	7ZDM	14658	2023-04-24	2022-03-29	3.44	3.47	—	3.4	0.006	0.85	1.0	1.03	16.68	0.01	2.195	5.31	0.35	3.8	96.2	0.0	-0.65	0.92	0.89	2.24	3.4	0.009	1.58	0.0	0.31	16.78	0.00	1.551	8.96	0.40	4.1	95.8	0.0	0.60	0.29	0.91	0.88	2.22	67086	8227	64	0	32	0	0	logfile

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