Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HBF	34627	2023-08-10	2022-10-28	3.1	3.32	—	3.3	0.010	0.84	1.0	0.05	15.71	0.01	1.951	9.76	0.46	3.2	96.6	0.2	-0.23	0.73	0.82	2.61	3.3	0.003	0.55	0.0	0.04	15.91	0.00	2.030	8.92	0.46	2.5	97.5	0.0	0.86	0.26	0.73	0.83	2.77	8448	1095	4	0	6	0	0	logfile
✔	7W4F	32303	2023-08-15	2021-11-27	2.7	2.82	—	2.8	0.008	0.82	1.0	0.04	18.28	0.01	2.201	6.62	1.59	3.8	96.2	0.1	0.96	0.79	0.89	3.43	2.8	0.003	0.57	0.0	0.04	17.61	0.00	2.145	6.11	2.22	3.5	96.4	0.1	1.12	0.26	0.78	0.89	3.43	68192	8270	70	0	46	0	0	logfile
✔	8CZE	27096	2023-08-12	2022-05-24	2.58	3.35	2.72	3.2	0.004	0.55	0.0	0.03	25.95	0.00	2.285	3.74	0.32	1.9	98.1	0.0	2.43	0.86	0.86	3.06	3.2	0.003	0.57	0.0	0.03	26.92	0.00	2.147	4.01	1.58	3.1	96.9	0.0	2.44	0.26	0.85	0.86	2.93	12029	763	10	292	0	0	0	logfile
✔	7W0H	32242	2023-08-14	2021-11-18	3.4	3.64	—	3.6	0.007	0.77	0.0	0.04	17.97	0.01	2.191	8.69	0.20	4.0	96.0	0.0	1.21	0.82	0.89	2.42	3.6	0.003	0.57	0.0	0.04	17.10	0.00	2.100	8.11	0.27	4.2	95.8	0.0	1.21	0.26	0.82	0.90	2.36	66850	8140	70	0	40	0	0	logfile
✔	7V7o	31776	2023-08-18	2021-08-21	2.9	3.72	—	3.2	0.007	0.69	0.0	0.05	13.84	0.00	2.158	7.07	0.00	5.5	94.4	0.1	-0.05	0.89	0.88	2.42	3.2	0.011	0.79	0.0	0.05	15.17	0.00	2.088	8.57	1.04	5.9	94.0	0.1	-0.19	0.26	0.89	0.88	2.12	25325	3092	41	0	83	0	0	logfile
✔	8io9	35612	2023-08-18	2023-03-10	2.36	3.18	2.44	2.8	0.005	0.60	0.0	0.04	10.81	0.00	1.987	8.65	0.48	3.5	96.5	0.0	0.34	0.86	0.84	4.54	2.8	0.003	0.50	0.0	0.04	12.23	0.00	1.930	8.38	0.63	3.7	96.3	0.0	0.62	0.26	0.86	0.85	3.88	75744	9456	24	0	36	0	0	logfile
✔	7W00	32232	2023-08-14	2021-11-17	3.5	3.66	—	3.6	0.006	0.78	0.0	0.04	18.05	0.01	2.199	8.78	0.37	3.8	96.2	0.0	1.04	0.78	0.87	2.25	3.6	0.003	0.56	0.0	0.04	17.17	0.00	2.156	8.35	0.28	3.9	96.1	0.0	1.17	0.26	0.78	0.87	2.18	66775	8140	67	0	39	0	0	logfile
✔	7Y13	33555	2023-08-09	2022-06-06	3.1	3.20	3.10	3.2	0.005	0.68	0.0	0.04	13.19	0.01	2.195	8.24	0.00	6.1	93.9	0.0	1.88	0.59	0.80	3.01	3.2	0.003	0.56	0.0	0.04	15.52	0.00	2.192	8.24	0.43	5.3	94.7	0.0	2.76	0.26	0.54	0.80	2.48	2199	264	1	0	7	2	0	logfile
✔	7TTT	26123	2023-08-23	2022-02-01	2.9	3.39	—	3.3	0.006	0.71	3.0	0.05	16.27	0.00	1.898	4.26	1.10	3.9	95.9	0.1	0.31	0.62	0.85	2.75	3.3	0.002	0.56	0.0	0.04	16.49	0.00	1.715	4.30	1.76	3.5	96.5	0.0	1.10	0.26	0.60	0.84	2.36	35180	4561	25	0	24	8	0	logfile
✔	7RQU	24636	2023-08-23	2021-08-08	3.05	3.32	—	3.3	0.012	1.15	0.0	0.06	17.86	0.00	2.334	3.79	0.00	3.2	96.8	0.0	1.69	0.63	0.76	2.73	3.3	0.003	0.45	0.0	0.03	15.71	0.00	2.351	3.30	0.42	3.7	96.3	0.0	1.99	0.26	0.64	0.80	2.66	35602	2416	8	0	38	0	16568	logfile
✔	8DTo	27706	2023-08-16	2022-07-26	3.57	3.93	3.47	3.6	0.007	0.94	0.0	0.06	13.87	0.01	2.241	3.34	0.00	4.6	95.4	0.0	-1.43	0.81	0.84	2.58	3.6	0.002	0.55	0.0	0.04	15.01	0.00	2.090	7.59	0.14	3.7	96.3	0.0	-0.44	0.26	0.81	0.85	2.42	20923	2445	54	0	146	0	0	logfile
✔	8AMX	15528	2023-08-14	2022-08-04	2.55	2.79	2.59	2.7	0.004	0.63	0.0	0.04	11.93	0.01	2.414	2.40	0.00	2.4	97.2	0.3	2.10	0.64	0.86	3.96	2.7	0.002	0.54	0.0	0.04	15.11	0.00	2.281	3.58	0.63	3.2	96.4	0.3	3.03	0.26	0.66	0.88	3.00	15633	2024	16	0	0	57	0	logfile
✔	8EX9	28655	2023-08-09	2022-10-25	2.96	3.27	3.00	3.2	0.003	0.49	0.0	0.03	17.73	0.00	2.200	13.65	0.79	4.3	95.7	0.0	-1.52	0.60	0.71	4.83	3.2	0.004	0.59	0.0	0.03	18.38	0.00	2.138	14.51	3.17	4.9	95.1	0.0	-0.86	0.26	0.60	0.72	4.45	4199	166	4	139	0	0	0	logfile
✔	7TC8	25805	2023-08-16	2021-12-23	2.4	2.46	—	2.5	0.008	0.68	0.0	0.05	17.52	0.00	1.659	12.50	3.31	2.3	97.7	0.0	0.38	0.74	0.86	5.19	2.5	0.003	0.47	0.0	0.04	17.56	0.00	1.800	15.88	2.86	2.2	97.8	0.0	1.50	0.26	0.74	0.87	5.15	20567	2113	8	0	4	0	3200	logfile
✔	7P7J	13237	2023-08-24	2021-07-19	2.7	2.61	—	2.3	0.005	0.77	0.0	1.47	14.69	0.01	2.212	4.92	1.25	2.4	97.5	0.0	-0.28	0.91	0.90	3.67	2.4	0.012	2.19	0.0	0.45	15.02	0.00	2.070	8.40	1.56	2.2	97.8	0.0	1.28	0.26	0.91	0.89	3.58	37448	4719	24	0	28	0	0	logfile
✔	8C4T	16428	2023-08-11	2023-01-04	3.23	3.32	3.18	3.3	0.003	0.58	2.0	0.05	16.49	0.00	2.148	8.51	0.36	2.9	97.1	0.0	0.76	0.79	0.84	2.89	3.3	0.003	0.51	0.0	0.04	16.64	0.00	2.180	7.93	0.18	3.6	96.4	0.0	1.30	0.26	0.78	0.84	2.94	10459	1268	3	12	1	0	0	logfile
✔	7WiJ	32531	2023-08-12	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.53	0.0	0.03	15.57	0.00	2.262	4.68	0.00	0.8	99.2	0.0	3.40	0.26	0.71	0.87	1.79	12396	1602	6	0	0	0	0	logfile
✔	8CV2	27006	2023-08-11	2022-05-17	2.44	2.61	2.44	2.8	0.003	0.53	0.0	0.04	14.13	0.00	2.281	3.79	0.00	1.6	98.4	0.0	1.88	0.64	0.85	1.65	2.8	0.002	0.51	0.0	0.04	14.93	0.00	2.275	4.33	1.29	1.0	99.0	0.0	3.10	0.26	0.60	0.83	1.62	9882	1299	6	0	6	0	0	logfile
✔	7RXB	24727	2023-08-10	2021-08-22	3.07	3.22	—	3.2	0.009	1.15	0.0	0.05	14.60	0.01	2.437	0.72	0.00	6.0	94.0	0.0	-4.88	0.67	0.89	3.48	3.2	0.002	0.53	0.0	0.04	14.48	0.00	2.379	1.98	0.00	5.2	94.8	0.0	-0.20	0.26	0.63	0.88	3.17	8506	1096	4	0	8	0	0	logfile
✔	7SK4	25172	2023-08-13	2021-10-19	3.3	3.73	—	3.6	0.003	0.50	0.0	0.05	14.48	0.00	2.086	5.89	0.00	5.6	94.4	0.0	-0.26	0.68	0.79	1.76	3.6	0.003	0.51	0.0	0.04	15.54	0.00	2.068	7.17	0.14	5.6	94.4	0.0	0.05	0.26	0.68	0.80	1.59	13145	831	7	0	2	0	6489	logfile

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