Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DY7	27777	2023-04-21	2022-08-03	3.18	3.44	3.26	3.4	0.003	0.65	0.0	0.04	17.36	0.00	1.507	3.64	0.00	4.3	95.7	0.0	0.22	0.71	0.81	2.62	3.4	0.004	0.64	0.0	0.04	18.30	0.00	1.936	4.98	0.10	5.1	94.9	0.0	0.22	0.29	0.73	0.84	2.40	61085	3612	14	149	5	0	29915	logfile
✔	7BC6	12140	2023-04-20	2020-12-18	3.2	3.48	3.20	3.4	0.008	0.90	0.0	0.05	13.65	0.01	2.145	9.76	0.92	7.0	93.0	0.0	-1.77	0.64	0.85	2.92	3.4	0.004	0.65	0.0	0.04	15.20	0.00	2.200	8.93	0.46	4.2	95.8	0.0	0.13	0.29	0.59	0.84	1.99	4178	549	2	0	0	0	0	logfile
✔	7ZRG	14913	2023-04-22	2022-05-04	3.5	3.19	3.44	3.3	0.004	0.78	0.0	0.05	16.02	0.01	2.291	6.53	0.00	4.5	95.5	0.0	-1.09	0.64	0.80	1.65	3.3	0.002	0.54	0.0	0.04	16.36	0.00	2.155	10.27	0.18	3.8	96.2	0.0	0.49	0.29	0.64	0.82	1.40	11032	1448	6	0	10	0	0	logfile
✔	7MU1	24001	2023-04-27	2021-05-14	3.3	3.25	—	3.2	0.006	0.65	0.0	0.04	13.49	0.00	2.078	13.28	0.43	3.4	96.6	0.0	0.09	0.86	0.89	3.34	3.2	0.002	0.53	0.0	0.04	15.01	0.00	2.317	7.87	0.00	4.3	95.7	0.0	1.05	0.29	0.86	0.91	3.05	130320	15840	60	0	60	0	0	logfile
✔	7W2K	32263	2023-04-23	2021-11-24	2.9	3.00	—	3.0	0.007	0.77	2.0	0.04	17.96	0.01	2.125	9.55	1.51	3.6	96.3	0.1	1.00	0.80	0.88	3.00	3.0	0.003	0.56	0.0	0.04	17.48	0.00	2.170	8.41	2.04	3.6	96.3	0.0	0.96	0.29	0.79	0.88	2.90	66522	8140	66	0	37	0	0	logfile
✔	8GU6	34270	2023-04-23	2022-09-10	3.1	3.33	3.14	3.4	0.002	0.53	0.0	0.04	17.38	0.00	2.091	13.08	0.14	5.6	94.4	0.0	-0.34	0.70	0.79	2.37	3.3	0.003	0.54	0.0	0.04	17.28	0.00	2.132	12.23	0.36	6.0	94.0	0.0	-0.12	0.29	0.69	0.79	2.29	15261	1870	5	50	4	0	0	logfile
✔	8E57	27905	2023-04-24	2022-08-20	2.8	2.97	2.82	3.0	0.005	0.60	0.0	0.12	15.51	0.00	2.214	5.98	0.66	4.2	95.8	0.0	0.54	0.61	0.83	2.94	3.0	0.002	0.62	0.0	0.06	16.02	0.00	2.208	6.53	1.56	4.6	95.4	0.0	0.27	0.29	0.63	0.84	2.71	18449	2247	12	0	28	0	0	logfile
✔	7ZDM	14658	2023-04-24	2022-03-29	3.44	3.47	—	3.4	0.006	0.85	1.0	1.03	16.68	0.01	2.195	5.31	0.35	3.8	96.2	0.0	-0.65	0.92	0.89	2.24	3.4	0.009	1.58	0.0	0.31	16.78	0.00	1.551	8.96	0.40	4.1	95.8	0.0	0.60	0.29	0.91	0.88	2.22	67086	8227	64	0	32	0	0	logfile
✔	8DL7	27498	2023-04-20	2022-07-07	2.7	3.86	2.72	3.3	0.005	0.84	3.0	0.05	16.37	0.00	2.238	7.20	2.90	4.5	95.3	0.2	1.47	0.75	0.84	2.18	3.3	0.003	0.79	2.0	0.04	15.96	0.00	2.171	5.78	1.71	3.6	96.3	0.1	1.75	0.29	0.75	0.84	2.46	6586	907	6	0	6	1	0	logfile
✔	7XTZ	33453	2023-04-19	2022-05-18	2.8	2.99	2.73	2.9	0.012	0.90	0.0	0.05	13.57	0.00	2.204	0.77	0.42	3.2	96.8	0.0	-0.29	0.83	0.84	4.09	2.9	0.002	0.48	0.0	0.04	14.33	0.00	2.060	2.70	0.70	3.1	96.9	0.0	0.02	0.30	0.83	0.86	3.72	51900	3291	21	0	75	0	25032	logfile
✔	7V7S	31780	2023-04-27	2021-08-21	3.0	3.84	—	3.3	0.004	0.59	0.0	0.05	13.81	0.00	2.197	7.39	0.00	3.9	96.0	0.0	0.13	0.88	0.86	1.94	3.3	0.007	0.66	0.0	0.05	15.26	0.00	2.137	8.91	1.11	5.4	94.6	0.0	0.01	0.30	0.87	0.86	1.96	25255	3088	39	0	81	0	0	logfile
✔	7ENN	31217	2023-04-23	2021-04-18	2.8	3.21	—	3.1	0.006	0.68	0.0	0.04	25.33	0.00	2.127	7.99	0.00	4.5	95.4	0.1	-0.16	0.84	0.87	4.06	3.1	0.003	0.59	0.0	0.03	26.22	0.00	2.126	6.96	1.10	4.6	95.4	0.0	0.95	0.30	0.83	0.89	3.46	16319	1300	12	292	2	0	0	logfile
✔	7USX	26742	2023-04-23	2022-04-26	3.09	3.45	3.15	3.4	0.004	0.86	0.0	0.04	16.31	0.01	2.223	9.94	0.14	3.7	96.3	0.0	1.65	0.62	0.78	1.63	3.4	0.003	0.52	0.0	0.04	16.37	0.00	2.183	6.95	0.14	3.5	96.5	0.0	1.86	0.30	0.56	0.78	1.38	14220	1670	12	0	54	0	0	logfile
✔	7XCP	33125	2023-04-24	2022-03-24	3.05	3.19	3.01	3.2	0.003	0.58	1.0	0.04	14.30	0.00	2.182	10.72	0.23	3.6	96.3	0.1	0.72	0.65	0.71	2.53	3.2	0.003	0.57	0.0	0.04	15.45	0.00	1.998	11.28	0.23	4.0	96.0	0.0	0.87	0.30	0.67	0.74	2.20	8261	1017	7	0	8	0	0	logfile
✔	7EDG	31070	2023-04-27	2021-03-16	3.2	3.75	—	3.7	0.004	0.68	0.0	0.05	13.81	0.00	1.362	6.89	0.45	6.7	92.9	0.4	-1.02	0.79	0.80	2.17	3.7	0.003	0.58	0.0	0.04	15.16	0.00	2.145	6.54	0.27	6.6	93.3	0.1	-0.69	0.30	0.80	0.82	1.88	24715	3023	36	0	79	0	0	logfile
✔	7Y6U	33648	2023-04-21	2022-06-21	3.2	4.00	3.27	3.5	0.004	0.69	0.0	0.05	13.09	0.00	2.170	7.45	0.00	5.5	94.2	0.3	-0.28	0.66	0.83	3.27	3.5	0.003	0.58	0.0	0.04	14.44	0.00	2.163	8.22	0.19	5.5	94.2	0.3	-0.41	0.30	0.66	0.84	2.95	9915	1224	13	0	40	0	0	logfile
✔	8D68	27220	2023-04-22	2022-06-06	3.36	3.13	3.28	3.2	0.008	1.06	0.0	0.06	15.51	0.01	2.212	3.37	0.00	7.0	93.0	0.0	-1.43	0.70	0.84	3.63	3.2	0.005	0.68	0.0	0.05	15.03	0.00	2.171	3.22	0.14	7.1	92.9	0.0	-0.63	0.30	0.70	0.83	2.87	13055	1560	10	0	5	0	0	logfile
✔	7oQY	13034	2023-04-28	2021-06-04	2.61	2.96	2.55	2.9	0.020	0.88	0.0	0.20	13.68	0.00	1.842	4.99	0.00	2.9	97.1	0.0	-0.33	0.67	0.82	3.68	2.9	0.005	0.81	0.0	0.05	16.31	0.00	1.531	4.92	1.06	3.0	97.0	0.0	-0.38	0.30	0.66	0.84	3.47	28032	3535	20	0	10	0	0	logfile
✔	7UKF	26579	2023-04-20	2022-04-01	3.02	3.32	3.06	3.3	0.004	0.61	0.0	0.04	11.50	0.00	2.290	9.17	0.00	2.3	97.7	0.0	1.20	0.58	0.83	3.02	3.3	0.004	0.54	0.0	0.04	14.31	0.00	2.159	9.11	0.24	3.3	96.7	0.0	1.79	0.30	0.57	0.84	2.25	8005	1036	5	0	5	0	0	logfile
✔	8DKE	27488	2023-04-20	2022-07-05	3.18	3.43	3.12	3.4	0.003	0.74	2.0	0.05	14.40	0.01	2.179	7.36	0.83	6.2	93.8	0.0	-0.95	0.57	0.85	3.68	3.5	0.002	0.54	0.0	0.04	15.62	0.00	2.252	5.75	0.62	5.3	94.7	0.0	0.23	0.30	0.57	0.85	3.23	4369	553	3	0	0	0	0	logfile

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