Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DKE	27488	2022-12-11	2022-07-05	3.18	3.43	3.12	3.4	0.003	0.74	2.0	0.05	14.40	0.01	2.179	7.47	0.83	6.2	93.8	0.0	-0.95	0.57	0.85	3.68	3.4	0.003	0.56	0.0	0.04	15.56	0.00	2.228	5.98	0.62	6.0	94.0	0.0	0.20	0.29	0.57	0.86	3.28	4369	553	3	0	0	0	0	logfile
✔	8EAS	27984	2022-12-15	2022-08-29	2.6	2.77	2.60	2.8	0.006	0.64	0.0	0.04	12.91	0.00	2.044	9.09	0.00	1.4	98.6	0.0	1.65	0.67	0.83	4.09	2.8	0.003	0.52	0.0	0.04	15.45	0.00	2.189	9.04	1.20	1.2	98.8	0.0	2.29	0.29	0.66	0.84	3.41	24802	3241	18	0	39	0	0	logfile
✔	7E8D	31015	2022-12-13	2021-03-01	2.8	3.12	—	3.0	0.011	0.72	0.0	0.05	28.84	0.00	2.070	7.70	1.95	5.1	94.8	0.1	-0.71	0.83	0.87	3.74	2.9	0.003	0.61	0.0	0.04	29.13	0.00	2.106	8.89	1.22	3.6	96.4	0.0	1.02	0.29	0.85	0.90	3.21	14852	983	11	344	4	0	0	logfile
✔	7TL1	25983	2022-12-15	2022-01-18	3.5	3.79	3.47	3.6	0.003	0.66	0.0	0.05	11.12	0.01	2.302	3.36	0.00	3.6	96.4	0.0	-0.64	0.85	0.83	2.56	3.6	0.004	0.52	0.0	0.04	12.51	0.00	2.145	6.60	0.07	3.9	96.1	0.0	0.31	0.29	0.85	0.85	2.47	25109	3138	11	0	38	0	0	logfile
✔	7V7N	31775	2022-12-15	2021-08-21	2.9	3.77	—	3.2	0.004	0.55	0.0	0.05	13.44	0.00	2.171	6.70	0.00	5.4	94.4	0.1	0.11	0.89	0.87	2.63	3.2	0.004	0.58	0.0	0.05	14.77	0.00	2.191	7.72	1.33	4.5	95.3	0.1	0.25	0.29	0.89	0.87	2.07	25430	3101	42	0	85	0	0	logfile
✔	7MR2	23954	2022-12-13	2021-05-07	4.3	4.72	—	4.5	0.003	0.75	0.0	0.05	14.96	0.01	2.257	5.86	0.00	5.1	94.9	0.0	-1.32	0.90	0.84	—	4.5	0.002	0.55	0.0	0.04	14.98	0.00	2.153	10.06	0.00	4.6	95.4	0.0	0.28	0.29	0.90	0.84	—	16671	2075	3	0	0	0	0	logfile
✔	7ZRi	14915	2022-12-12	2022-05-04	3.5	3.62	3.50	3.6	0.006	0.92	0.0	0.05	15.75	0.01	2.196	7.56	0.00	4.6	95.4	0.0	-1.22	0.70	0.82	1.47	3.6	0.003	0.57	0.0	0.04	16.09	0.00	2.156	10.41	0.18	3.8	96.2	0.0	0.29	0.29	0.70	0.83	1.33	11014	1450	6	0	9	0	0	logfile
✔	7WBL	32405	2022-12-13	2021-12-17	3.4	3.46	—	3.5	0.004	0.58	0.0	0.04	15.30	0.00	2.158	6.95	0.72	3.6	96.1	0.4	0.52	0.67	0.77	2.33	3.5	0.003	0.54	0.0	0.04	16.78	0.00	2.174	5.76	0.14	3.0	96.8	0.1	1.14	0.29	0.67	0.80	1.70	6484	791	3	0	5	0	0	logfile
✔	7FGG	31580	2022-12-21	2021-07-27	2.19	2.26	—	2.2	0.010	1.05	0.0	0.06	17.46	0.01	2.005	2.76	2.08	3.8	96.2	0.0	-0.12	0.76	0.80	5.14	2.2	0.003	0.68	0.0	0.05	17.68	0.00	1.960	2.01	1.71	3.4	96.6	0.0	0.48	0.29	0.80	0.89	5.23	45132	5424	36	0	36	1764	0	logfile
✔	7ZRE	14912	2022-12-12	2022-05-04	3.4	2.77	3.31	3.2	0.006	0.93	1.0	0.05	15.97	0.01	2.231	7.40	0.00	4.3	95.7	0.0	-0.86	0.61	0.78	2.49	3.2	0.003	0.58	0.0	0.04	16.23	0.00	2.132	11.63	0.35	3.9	96.1	0.0	0.53	0.29	0.62	0.81	2.17	10996	1447	6	0	11	0	0	logfile
✔	7V7F	31769	2022-12-15	2021-08-21	2.9	3.82	—	3.2	0.004	0.56	0.0	0.05	13.42	0.00	2.061	7.34	0.00	5.1	94.7	0.1	-0.13	0.88	0.86	2.44	3.2	0.005	0.58	0.0	0.05	14.94	0.00	2.108	8.30	1.51	5.7	94.2	0.1	-0.14	0.29	0.89	0.87	2.25	25503	3114	42	0	84	0	0	logfile
✔	7EDG	31070	2022-12-15	2021-03-16	3.2	3.75	—	3.7	0.003	0.62	0.0	0.05	13.86	0.00	1.362	6.96	0.45	6.7	92.9	0.4	-1.02	0.79	0.80	2.17	3.7	0.005	0.62	0.0	0.05	15.08	0.00	2.159	6.87	0.38	7.5	92.4	0.1	-0.88	0.29	0.80	0.83	1.97	24715	3023	36	0	79	0	0	logfile
✔	7VD9	31911	2022-12-13	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	8.15	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.004	0.67	0.0	0.05	17.73	0.01	2.197	9.18	3.08	5.1	94.9	0.0	-0.55	0.29	0.59	0.74	3.69	16426	1991	8	0	8	0	0	logfile
✔	7o6E	12738	2022-12-19	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.61	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.46	0.0	0.03	18.16	0.00	2.221	3.78	0.29	0.5	99.5	0.0	4.53	0.29	0.88	0.89	5.11	35304	4248	48	0	0	1392	0	logfile
✔	7UL5	26592	2022-12-11	2022-04-03	3.1	3.32	3.08	3.3	0.004	0.64	0.0	0.04	11.76	0.01	2.404	3.68	0.00	3.1	96.9	0.0	-1.07	0.64	0.85	3.67	3.3	0.003	0.52	0.0	0.04	13.36	0.00	2.338	1.47	0.37	1.4	98.6	0.0	2.78	0.29	0.65	0.87	3.19	2773	371	2	0	0	0	0	logfile
✔	7ZRK	14917	2022-12-12	2022-05-04	3.1	2.68	3.17	3.0	0.005	0.77	0.0	0.05	15.75	0.01	2.251	6.83	0.00	4.5	95.5	0.0	-0.25	0.63	0.81	2.05	3.0	0.003	0.57	0.0	0.04	16.16	0.00	2.164	9.36	0.18	4.0	96.0	0.0	0.80	0.29	0.63	0.83	2.32	11050	1450	6	0	15	0	0	logfile
✔	7XKP	33259	2022-12-15	2022-04-20	3.0	3.46	3.07	3.2	0.002	0.48	0.0	0.04	13.19	0.00	2.089	3.94	0.00	2.4	97.6	0.0	1.63	0.84	0.90	3.37	3.2	0.003	0.52	0.0	0.04	14.83	0.00	1.996	4.74	0.97	2.7	97.3	0.0	1.48	0.29	0.84	0.91	3.04	24105	3128	8	0	2	0	0	logfile
✔	7SK8	25176	2022-12-13	2021-10-19	3.3	3.55	—	3.5	0.008	1.03	0.0	0.22	14.91	0.00	2.265	2.62	0.00	5.2	94.8	0.0	-0.08	0.70	0.83	3.30	3.5	0.003	0.50	0.0	0.04	15.29	0.00	2.120	4.66	0.00	4.9	95.1	0.0	0.18	0.30	0.69	0.83	3.35	13389	835	7	0	8	0	6513	logfile
✔	7MKJ	23897	2022-12-16	2021-04-23	2.9	3.41	3.07	3.3	0.007	0.67	0.0	0.05	16.29	0.00	2.195	5.54	3.83	5.4	94.6	0.0	-1.98	0.69	0.80	3.35	3.3	0.003	0.57	0.0	0.04	17.54	0.00	2.096	7.32	2.71	4.7	95.3	0.0	-0.35	0.30	0.72	0.83	2.65	32007	3754	12	118	6	0	0	logfile
✔	7UZS	26917	2022-12-12	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.0	0.003	0.56	0.0	0.04	17.93	0.00	2.035	4.15	1.43	2.0	98.0	0.0	1.16	0.30	0.64	0.87	6.29	10550	658	1	0	0	193	5183	logfile

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