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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7URD | 26709 | 2024-04-05 | 2022-04-21 | 2.92 | 3.41 | 2.97 | 3.3 | 0.017 | 0.95 | 0.0 | 0.83 | 26.25 | 0.00 | 2.177 | 10.24 | 0.00 | 5.0 | 95.0 | 0.0 | -2.44 | 0.59 | 0.86 | 3.86 | 3.3 | 0.002 | 1.08 | 0.0 | 0.12 | 19.85 | 0.00 | 2.272 | 6.22 | 1.56 | 3.6 | 96.4 | 0.0 | 0.73 | 0.93 | 0.55 | 0.85 | 3.16 | 5534 | 678 | 5 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PEW | 13359 | 2024-04-09 | 2021-08-11 | 4.6 | 5.68 | — | 4.1 | 0.006 | 0.91 | 0.0 | 0.05 | 30.19 | 0.01 | 2.249 | 5.53 | 0.00 | 1.1 | 98.9 | 0.0 | -0.20 | 0.89 | 0.85 | — | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 29.58 | 0.00 | 2.170 | 19.67 | 0.00 | 2.4 | 97.6 | 0.0 | 1.56 | 1.21 | 0.89 | 0.86 | — | 13304 | 768 | 10 | 352 | 0 | 0 | 0 | logfile |
✔ | 7VNE | 32040 | 2024-04-15 | 2021-10-10 | 3.5 | 3.54 | — | 3.5 | 0.011 | 0.90 | 0.0 | 0.06 | 17.64 | 0.00 | 2.083 | 11.40 | 0.00 | 10.0 | 90.0 | 0.0 | -2.70 | 0.62 | 0.68 | 2.50 | 3.5 | 0.004 | 0.70 | 0.0 | 0.05 | 16.47 | 0.00 | 2.153 | 9.14 | 1.78 | 8.4 | 91.6 | 0.0 | -1.77 | 1.08 | 0.67 | 0.80 | 2.18 | 28715 | 3558 | 31 | 0 | 67 | 0 | 0 | logfile |
✔ | 7RD7 | 24414 | 2024-04-06 | 2021-07-09 | 3.08 | 3.26 | — | 3.3 | 0.005 | 1.33 | 0.0 | 0.05 | 13.97 | 0.01 | 1.902 | 8.98 | 0.00 | 7.1 | 92.9 | 0.0 | -1.78 | 0.59 | 0.74 | 2.28 | 3.3 | 0.003 | 0.89 | 0.0 | 0.04 | 16.06 | 0.00 | 2.025 | 11.73 | 2.29 | 6.4 | 93.6 | 0.0 | -0.92 | 0.32 | 0.60 | 0.77 | 2.02 | 7400 | 929 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7F02 | 31394 | 2024-04-06 | 2021-06-03 | 3.24 | 3.61 | — | 3.5 | 0.004 | 0.69 | 0.0 | 0.04 | 14.42 | 0.00 | 1.895 | 8.78 | 0.00 | 8.7 | 91.1 | 0.2 | -1.36 | 0.69 | 0.81 | 2.02 | 3.5 | 0.004 | 0.68 | 0.0 | 0.04 | 16.30 | 0.00 | 1.914 | 9.00 | 2.73 | 8.4 | 91.6 | 0.0 | -0.55 | 0.91 | 0.65 | 0.83 | 2.10 | 8835 | 1130 | 9 | 0 | 5 | 0 | 0 | logfile |
✔ | 8GVE | 34291 | 2024-04-06 | 2022-09-15 | 3.17 | 3.38 | 3.19 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 14.33 | 0.01 | 2.113 | 5.93 | 0.00 | 5.7 | 94.3 | 0.0 | 0.31 | 0.64 | 0.80 | 1.68 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 16.02 | 0.00 | 2.229 | 6.17 | 1.71 | 5.5 | 94.5 | 0.0 | 0.93 | 0.27 | 0.64 | 0.82 | 1.13 | 8054 | 1020 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LPA | 23474 | 2024-04-10 | 2021-02-11 | 3.37 | 3.43 | 3.23 | 3.5 | 0.009 | 0.88 | 0.0 | 0.05 | 19.64 | 0.00 | 2.201 | 7.90 | 0.00 | 4.1 | 95.9 | 0.0 | -0.82 | 0.56 | 0.75 | 2.45 | 3.5 | 0.003 | 0.55 | 0.0 | 0.04 | 16.80 | 0.00 | 2.251 | 6.13 | 1.67 | 2.9 | 97.1 | 0.0 | 1.04 | 0.37 | 0.62 | 0.75 | 2.08 | 18634 | 2392 | 8 | 0 | 30 | 0 | 0 | logfile |
✔ | 7XD3 | 33134 | 2024-04-06 | 2022-03-26 | 4.05 | 4.16 | — | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 24.05 | 0.00 | 1.960 | 1.21 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.85 | 0.74 | — | 3.9 | 0.007 | 0.81 | 0.0 | 0.04 | 24.31 | 0.01 | 1.687 | 16.91 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.74 | 0.87 | 0.81 | — | 9062 | 0 | 1 | 423 | 28 | 0 | 0 | logfile |
✔ | 7K2T | 22644 | 2024-04-07 | 2020-09-09 | 3.6 | 3.72 | — | 3.7 | 0.005 | 0.78 | 0.0 | 0.04 | 14.49 | 0.00 | 1.955 | 9.52 | 0.00 | 4.4 | 95.6 | 0.0 | -3.30 | 0.69 | 0.84 | 2.63 | 3.7 | 0.005 | 0.68 | 0.0 | 0.04 | 16.30 | 0.00 | 1.861 | 10.88 | 2.85 | 4.1 | 95.9 | 0.0 | -0.85 | 0.64 | 0.69 | 0.84 | 2.01 | 10275 | 1249 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PR1 | 13607 | 2024-04-07 | 2021-09-20 | 2.81 | 3.22 | 2.90 | 3.1 | 0.007 | 0.95 | 0.0 | 0.05 | 14.35 | 0.00 | 2.053 | 7.90 | 0.00 | 2.1 | 97.9 | 0.0 | -0.18 | 0.63 | 0.83 | 3.36 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 16.39 | 0.00 | 2.153 | 10.59 | 1.44 | 2.0 | 98.0 | 0.0 | 1.77 | 0.94 | 0.57 | 0.81 | 3.05 | 9222 | 1174 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7MSX | 23971 | 2024-04-05 | 2021-05-12 | 3.15 | 3.24 | 3.04 | 3.2 | 0.008 | 0.62 | 0.0 | 0.05 | 10.30 | 0.00 | 2.385 | 0.81 | 0.00 | 1.9 | 98.1 | 0.0 | 0.06 | 0.77 | 0.85 | 3.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3706 | 473 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 6CVM | 7770 | 2024-04-16 | 2018-03-28 | 1.9 | 2.49 | 1.94 | 2.3 | 0.012 | 0.92 | 0.0 | 0.06 | 10.25 | 0.01 | 2.053 | 3.70 | 0.00 | 2.7 | 97.3 | 0.0 | -1.16 | 0.81 | 0.91 | 7.66 | 2.3 | 0.005 | 0.63 | 0.0 | 0.05 | 13.90 | 0.00 | 1.982 | 6.61 | 0.92 | 2.6 | 97.4 | 0.0 | 0.72 | 0.36 | 0.85 | 0.94 | 6.95 | 37062 | 4084 | 12 | 0 | 20 | 4194 | 0 | logfile |
✔ | 7TQS | 26068 | 2024-04-15 | 2022-01-26 | 3.9 | 4.01 | 3.74 | 4.0 | 0.021 | 1.80 | 1.0 | 0.10 | 9.83 | 0.01 | 2.363 | 1.22 | 0.00 | 1.7 | 98.3 | 0.0 | 0.58 | 0.50 | 0.83 | 3.31 | 3.9 | 0.005 | 0.85 | 1.0 | 0.05 | 15.88 | 0.00 | 1.715 | 20.59 | 5.32 | 4.4 | 95.6 | 0.0 | -0.68 | 1.31 | 0.48 | 0.84 | 2.59 | 34113 | 4249 | 27 | 0 | 207 | 0 | 0 | logfile |
✔ | 7LKF | 23405 | 2024-04-05 | 2021-02-02 | 2.9 | 2.97 | — | 3.0 | 0.005 | 0.67 | 0.0 | 0.05 | 12.76 | 0.01 | 2.101 | 5.26 | 0.00 | 4.6 | 95.4 | 0.0 | -0.59 | 0.70 | 0.83 | 4.15 | 3.0 | 0.003 | 0.63 | 0.0 | 0.04 | 16.44 | 0.00 | 2.231 | 5.13 | 1.98 | 2.6 | 97.4 | 0.0 | -0.11 | 1.15 | 0.71 | 0.86 | 3.94 | 4139 | 511 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6PKX | 20369 | 2024-04-14 | 2019-06-30 | 4.2 | 4.33 | 3.97 | 4.2 | 0.008 | 1.02 | 0.0 | 0.06 | 11.03 | 0.01 | 2.151 | 5.18 | 0.00 | 7.5 | 92.4 | 0.0 | -3.99 | 0.66 | 0.69 | — | 4.2 | 0.004 | 0.70 | 0.0 | 0.04 | 11.59 | 0.00 | 2.152 | 8.66 | 0.00 | 7.5 | 92.4 | 0.0 | -0.12 | 0.68 | 0.69 | 0.74 | — | 32448 | 4760 | 6 | 0 | 92 | 0 | 0 | logfile |
✔ | 8FKZ | 29262 | 2024-04-10 | 2022-12-21 | 3.04 | 3.41 | 3.18 | 3.1 | 0.003 | 0.54 | 0.0 | 0.03 | 21.45 | 0.00 | 1.941 | 2.23 | 0.00 | 1.0 | 99.0 | 0.0 | 1.48 | 0.75 | 0.83 | 2.81 | 3.1 | 0.007 | 0.68 | 0.0 | 0.04 | 21.59 | 0.01 | 1.861 | 7.32 | 1.83 | 2.8 | 97.1 | 0.0 | 0.76 | 1.15 | 0.76 | 0.87 | 2.61 | 130011 | 8099 | 63 | 3056 | 69 | 0 | 0 | logfile |
✔ | 7KMT | 22928 | 2024-04-09 | 2020-11-03 | 3.7 | 4.43 | 3.72 | 3.8 | 0.004 | 0.79 | 0.0 | 0.04 | 15.02 | 0.00 | 2.018 | 7.32 | 0.00 | 6.3 | 93.7 | 0.0 | -0.95 | 0.88 | 0.82 | 1.79 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 16.51 | 0.00 | 2.172 | 12.30 | 1.13 | 4.9 | 95.1 | 0.0 | 0.12 | 0.58 | 0.88 | 0.83 | 1.78 | 14945 | 1838 | 11 | 0 | 2 | 0 | 0 | logfile |
✔ | 7TMW | 26003 | 2024-04-06 | 2022-01-20 | 3.2 | 2.40 | 3.16 | 3.2 | 0.003 | 0.70 | 0.0 | 0.05 | 13.22 | 0.01 | 2.193 | 9.31 | 0.00 | 2.6 | 97.4 | 0.0 | -0.28 | 0.71 | 0.64 | 1.01 | 2.0 | 0.005 | 1.00 | 1.0 | 0.05 | 15.69 | 0.00 | 2.124 | 15.24 | 3.68 | 3.4 | 96.6 | 0.0 | 0.22 | 0.48 | 0.73 | 0.68 | 0.95 | 7320 | 930 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oR5 | 9032 | 2024-04-07 | 2019-04-29 | 4.0 | 4.23 | — | 3.9 | 0.008 | 1.12 | 0.0 | 0.05 | 15.95 | 0.00 | 2.245 | 4.84 | 0.00 | 17.3 | 82.4 | 0.3 | -5.53 | 0.76 | 0.79 | — | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 9.86 | 0.00 | 2.214 | 4.84 | 0.00 | 14.6 | 85.4 | 0.0 | -1.65 | 1.34 | 0.78 | 0.80 | — | 10364 | 2058 | 1 | 0 | 5 | 0 | 0 | logfile |
✔ | 6X5B | 22048 | 2024-04-10 | 2020-05-25 | 3.6 | 3.79 | 3.55 | 3.7 | 0.021 | 1.79 | 0.0 | 0.13 | 12.10 | 0.01 | 2.434 | 0.57 | 0.00 | 2.5 | 97.5 | 0.0 | 0.48 | 0.70 | 0.74 | 2.36 | 3.7 | 0.006 | 1.03 | 5.0 | 0.05 | 15.18 | 0.01 | 1.762 | 14.40 | 3.45 | 5.7 | 94.2 | 0.1 | -1.22 | 0.92 | 0.71 | 0.76 | 2.29 | 20232 | 2487 | 27 | 0 | 51 | 0 | 0 | logfile |