Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6D9H	7835	2021-06-01	2018-04-29	3.6	3.82	—	3.8	0.006	0.93	0.0	0.06	9.32	0.01	2.219	4.11	0.00	3.4	96.6	0.0	-1.52	0.65	0.78	2.88	3.9	0.003	0.54	0.0	0.04	14.03	0.00	2.099	9.07	0.53	3.3	96.7	0.0	0.82	1.25	0.66	0.79	1.89	7023	892	4	0	1	0	0	logfile
✔	6U5o	20651	2021-06-03	2019-08-28	3.7	3.81	—	3.8	0.005	0.79	0.0	0.04	14.70	0.01	2.093	5.74	0.00	0.0	100.0	0.0	-4.22	0.65	0.75	1.93	3.8	0.006	0.73	0.0	0.04	17.05	0.01	1.853	11.89	0.34	9.6	90.4	0.0	-1.54	2.00	0.68	0.80	1.91	26316	1623	5	0	0	0	13339	logfile
✔	6A7F	6993	2021-06-02	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.003	0.71	0.0	0.04	18.33	0.00	2.197	15.41	0.08	1.4	98.6	0.0	2.16	2.07	0.60	0.86	-0.10	10830	1410	30	0	0	0	0	logfile
✔	5W5F	8767	2021-06-03	2017-06-15	3.4	3.16	—	3.6	0.007	0.91	0.0	0.06	12.30	0.01	2.171	6.53	0.00	4.1	95.9	0.0	-2.49	0.66	0.71	0.69	3.5	0.005	0.77	0.0	0.05	17.02	0.00	2.047	17.78	1.14	4.8	95.2	0.0	-1.47	2.78	0.73	0.84	2.16	23472	2934	18	0	0	0	0	logfile
✔	6HCG	0193	2021-06-02	2018-08-15	4.3	3.90	4.21	3.9	0.011	1.31	0.0	0.07	10.57	0.01	1.943	35.38	0.00	9.9	90.1	0.0	-4.43	0.82	0.73	—	3.7	0.004	0.74	0.0	0.05	12.46	0.00	2.043	17.76	0.02	8.8	91.2	0.0	-1.78	2.79	0.84	0.76	—	85185	11295	45	0	0	0	0	logfile
✔	6oLK	20115	2021-06-03	2019-04-16	4.0	4.14	—	4.1	0.005	1.05	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.004	0.85	0.0	0.05	6.56	0.00	2.044	8.89	0.00	14.1	85.9	0.0	-1.97	1.52	0.63	0.60	—	10323	2094	6	0	0	0	0	logfile
✔	6B47	7051	2021-06-03	2017-09-25	3.2	3.29	—	3.2	0.009	1.03	0.0	0.06	11.55	0.01	1.819	6.49	0.00	10.6	89.2	0.2	-4.03	0.78	0.73	1.20	3.2	0.002	0.57	0.0	0.04	14.43	0.00	2.097	8.63	0.16	6.6	93.4	0.0	-0.14	1.35	0.86	0.85	2.51	22213	2965	11	60	0	0	0	logfile
✔	6V5V	21054	2021-06-01	2019-12-04	3.8	4.01	—	3.9	0.003	0.51	0.0	0.04	13.58	0.00	2.212	5.90	0.00	4.6	95.4	0.0	-2.04	0.52	0.82	2.06	3.9	0.002	0.57	0.0	0.04	14.66	0.00	2.234	6.91	0.00	3.2	96.8	0.0	0.68	0.62	0.52	0.82	1.68	2979	369	1	1	0	0	0	logfile
✔	6QYZ	4680	2021-06-01	2019-03-10	4.6	2.98	—	6.0	0.009	1.14	0.0	0.04	24.59	0.01	1.934	53.60	0.00	0.0	0.0	0.0	—	0.68	0.53	—	2.9	0.006	1.16	0.0	0.07	28.45	0.01	2.047	73.66	0.00	0.0	0.0	0.0	—	4.53	0.70	0.58	—	7300	0	5	345	0	0	0	logfile
✔	6XTB	10618	2021-06-01	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.19	0.0	0.05	9.82	0.01	2.083	13.22	0.00	33.8	66.2	0.0	-6.22	3.23	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	6DKF	7952	2021-06-02	2018-05-29	3.7	3.47	—	3.8	0.010	0.88	0.0	0.05	8.96	0.00	1.761	11.87	0.00	3.9	96.1	0.0	-5.10	0.73	0.76	2.82	3.7	0.003	0.72	0.0	0.04	16.78	0.00	2.105	13.09	0.89	2.8	97.2	0.0	0.39	2.33	0.73	0.79	1.65	17060	2314	14	0	0	0	0	logfile
✔	6oG3	20051	2021-06-01	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.002	0.66	0.0	0.00	4.56	0.00	2.650	3.04	0.00	4.9	95.1	0.0	0.48	2.10	0.66	0.84	—	1215	396	4	0	9	0	0	logfile
✔	6UP7	20836	2021-06-01	2019-10-16	4.2	4.33	—	4.2	0.008	1.08	0.0	0.06	10.29	0.01	2.216	9.58	0.00	13.2	86.8	0.0	-5.14	0.79	0.80	—	4.2	0.002	0.65	0.0	0.04	10.25	0.00	2.213	8.17	0.49	8.4	91.6	0.0	-0.98	1.24	0.78	0.78	—	4166	676	5	0	10	0	0	logfile
✔	6T20	10364	2021-06-02	2019-10-07	3.7	3.40	3.60	3.6	0.019	1.70	5.0	0.09	12.08	0.01	1.317	5.75	0.00	4.4	95.6	0.0	-1.10	0.68	0.80	2.72	3.5	0.008	0.86	5.0	0.05	17.03	0.01	1.931	10.78	1.02	4.6	95.4	0.0	-0.13	2.40	0.69	0.82	2.03	14915	1880	15	0	20	0	0	logfile
✔	6DJP	7939	2021-06-01	2018-05-25	4.8	5.02	—	4.8	0.011	2.00	0.0	0.08	5.34	0.01	2.368	0.36	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.007	1.19	0.0	0.05	8.99	0.01	2.084	18.47	0.00	24.3	75.6	0.1	-4.33	1.36	0.82	0.77	—	7307	1393	8	0	23	0	0	logfile
✘	6T24	10366	2021-06-02	2019-10-07	3.7	3.44	3.63	3.6	0.019	1.73	0.0	0.09	12.41	0.01	1.162	2.67	0.00	0.5	99.5	0.0	0.74	0.68	0.80	2.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14910	1855	10	0	20	0	0	logfile
✔	6E3Y	8978	2021-06-01	2018-07-16	3.3	4.08	—	3.7	0.007	1.01	0.0	0.06	9.69	0.01	2.282	4.51	0.00	2.6	97.4	0.0	-3.02	0.78	0.81	2.06	3.6	0.003	0.73	0.0	0.04	14.23	0.01	2.138	11.43	0.20	2.6	97.4	0.0	0.28	1.38	0.80	0.84	1.74	9434	1194	7	0	1	0	0	logfile
✔	6PZ9	20528	2021-06-01	2019-07-31	3.65	3.90	—	3.9	0.009	1.21	0.0	0.07	12.25	0.01	2.205	3.43	0.00	6.9	93.1	0.0	-3.88	0.65	0.67	2.19	3.9	0.004	0.72	0.0	0.05	14.80	0.00	2.151	9.28	1.77	6.1	93.9	0.0	-0.21	1.56	0.69	0.72	0.55	7773	1196	3	0	2	0	0	logfile
✔	6RAi	4776	2021-06-02	2019-04-06	2.9	3.05	3.00	3.0	0.009	1.40	6.0	0.08	9.82	0.01	1.948	9.27	0.00	3.4	96.6	0.0	-3.24	0.72	0.81	3.71	2.9	0.003	0.60	0.0	0.04	15.68	0.00	1.981	6.99	1.24	2.3	97.7	0.0	0.86	1.32	0.74	0.84	2.64	10191	1281	7	0	4	6	0	logfile
✔	6CV9	7637	2021-06-02	2018-03-27	3.8	4.02	3.77	3.9	0.006	1.00	0.0	0.05	9.51	0.01	2.316	6.13	0.00	8.7	91.3	0.0	-3.93	0.77	0.75	1.07	3.9	0.004	0.74	0.0	0.04	16.01	0.00	2.143	15.73	0.64	8.8	91.2	0.0	0.53	3.69	0.80	0.79	1.05	10032	1264	4	0	0	0	0	logfile

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