Table showing results for December 2022

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RLB	4918	2022-12-14	2019-05-01	4.5	4.85	4.49	4.3	0.007	0.95	0.0	0.06	4.70	0.00	2.082	0.71	0.00	4.0	95.9	0.0	-1.08	0.80	0.63	—	4.2	0.003	0.72	0.0	0.04	5.19	0.00	2.243	3.44	0.00	11.3	88.6	0.0	-0.76	1.85	0.86	0.66	—	20407	4122	14	0	0	0	0	logfile
✘	6B3Q	7041	2022-12-18	2017-09-22	3.7	3.84	3.74	3.7	0.005	1.03	0.0	0.06	12.29	0.01	2.212	4.15	0.00	2.6	97.4	0.0	-4.53	0.80	0.78	1.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15727	1929	4	0	0	0	0	logfile
✔	3JCL	6526	2022-12-15	2015-12-21	4.0	4.03	—	4.0	0.018	1.83	9.0	0.09	9.75	0.01	2.379	2.99	0.00	5.2	94.3	0.6	-0.72	0.71	0.74	—	4.0	0.004	0.75	0.0	0.04	14.71	0.00	2.130	13.44	0.40	7.4	92.5	0.1	-0.55	1.78	0.69	0.69	—	24822	3201	3	0	0	0	0	logfile
✔	6N37	9339	2022-12-11	2018-11-14	3.8	3.51	—	4.2	0.009	1.42	0.0	0.06	16.98	0.01	2.399	13.15	0.00	14.7	85.3	0.0	-5.92	0.51	0.77	3.18	3.6	0.004	0.78	0.0	0.04	18.43	0.00	2.266	20.72	0.80	11.2	88.8	0.0	-5.14	0.89	0.52	0.77	2.42	2580	360	10	0	0	0	0	logfile
✔	6N3C	0334	2022-12-11	2018-11-14	3.3	3.53	—	3.5	0.009	1.31	0.0	0.07	14.00	0.00	2.387	18.47	0.00	11.5	88.5	0.0	-5.01	0.52	0.83	4.06	3.5	0.003	0.68	0.0	0.04	15.70	0.00	2.372	12.69	1.58	8.2	91.8	0.0	-3.77	2.40	0.52	0.83	3.93	4260	640	20	0	0	0	0	logfile
✔	6UFR	20759	2022-12-11	2019-09-24	2.5	2.80	—	2.8	0.012	0.96	0.0	0.07	13.71	0.01	2.209	5.48	0.00	6.6	93.4	0.0	-1.99	0.50	0.87	5.55	2.8	0.004	0.63	0.0	0.06	17.00	0.00	2.402	2.46	2.95	4.8	95.2	0.0	-0.87	0.98	0.51	0.89	5.06	4420	630	20	0	0	90	0	logfile
✔	6GJZ	0012	2022-12-12	2018-05-17	4.06	4.32	3.49	4.1	0.011	1.11	0.0	0.05	10.30	0.01	2.008	14.06	0.00	10.8	88.9	0.3	-4.09	0.66	0.79	—	4.1	0.004	0.79	0.0	0.04	11.98	0.00	1.992	29.46	0.00	11.3	88.6	0.1	-0.92	1.53	0.67	0.80	—	10503	682	4	28	2	0	4402	logfile
✔	6MHV	9119	2022-12-19	2018-09-18	3.5	3.64	3.43	3.6	0.006	0.85	4.0	0.13	7.65	0.00	1.624	6.49	0.00	4.1	95.9	0.0	-1.96	0.75	0.80	3.89	3.6	0.003	0.65	0.0	0.12	13.50	0.00	1.948	6.18	0.06	3.3	96.7	0.0	1.94	1.85	0.76	0.82	3.89	35496	2452	4	0	0	0	17152	logfile
✔	6N3B	9350	2022-12-11	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.005	0.87	0.0	0.04	16.51	0.01	2.102	26.34	1.51	13.2	86.8	0.0	-5.29	1.48	0.42	0.71	1.88	2735	385	10	0	0	0	0	logfile
✔	5VMS	8712	2022-12-14	2017-04-28	3.7	4.28	—	4.2	0.007	1.47	15.0	0.07	12.69	0.00	2.234	5.32	0.00	3.2	96.8	0.0	2.06	0.53	0.66	1.58	4.2	0.003	0.71	0.0	0.04	15.88	0.00	2.134	10.69	0.61	2.4	97.6	0.0	3.13	0.77	0.60	0.80	1.04	18645	2420	10	0	15	0	0	logfile
✔	6PES	20331	2022-12-11	2019-06-20	3.6	3.82	—	4.0	0.009	0.70	0.0	0.06	12.87	0.01	2.432	11.45	0.00	12.3	87.7	0.0	-1.79	0.38	0.78	1.73	4.0	0.003	0.59	0.0	0.05	14.73	0.00	2.341	7.11	0.00	6.5	93.5	0.0	-2.43	0.56	0.43	0.81	2.65	4040	590	10	0	0	0	0	logfile
✔	6N3A	9349	2022-12-11	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.6	0.005	0.96	0.0	0.04	19.28	0.00	2.210	17.25	2.05	10.2	89.8	0.0	-5.15	1.99	0.51	0.79	2.70	4310	600	20	0	0	0	0	logfile
✔	6PEo	20328	2022-12-11	2019-06-20	3.3	3.52	—	3.6	0.003	0.54	0.0	0.05	13.06	0.01	2.492	10.62	0.00	9.7	90.3	0.0	-1.64	0.41	0.82	3.20	3.6	0.006	0.64	0.0	0.06	15.74	0.00	2.435	9.07	0.00	8.1	91.9	0.0	-2.61	1.64	0.42	0.83	4.88	2205	320	5	0	0	0	0	logfile
✔	6DJN	7937	2022-12-12	2018-05-25	3.1	3.26	—	3.2	0.011	0.95	0.0	0.06	10.67	0.01	2.106	5.53	0.00	5.4	94.6	0.0	-4.61	0.69	0.86	4.00	3.1	0.003	0.64	0.0	0.04	14.36	0.00	1.964	8.36	0.00	3.9	96.1	0.0	-0.12	0.64	0.70	0.88	2.68	11768	1488	8	0	12	0	0	logfile
✘	6V6B	21067	2022-12-18	2019-12-04	3.8	3.96	—	3.9	0.005	0.55	0.0	0.04	14.36	0.00	2.211	5.44	0.00	5.1	94.9	0.0	-5.29	0.54	0.84	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9115	1111	2	0	0	0	0	logfile
✔	6PCi	20301	2022-12-14	2019-06-17	4.12	4.25	—	4.1	0.009	1.02	0.0	0.06	8.91	0.01	2.268	6.45	0.00	6.8	93.2	0.0	-2.72	0.85	0.84	—	4.1	0.003	0.74	0.0	0.05	12.73	0.00	2.103	16.72	0.05	6.4	93.6	0.0	-0.80	0.84	0.85	0.84	—	18828	2382	24	0	27	0	0	logfile
✔	6DZM	8936	2022-12-13	2018-07-05	4.29	4.66	—	4.3	0.008	0.91	0.0	0.05	9.66	0.01	2.058	8.59	0.00	13.6	86.4	0.0	-4.76	0.77	0.80	—	4.3	0.003	0.70	0.0	0.04	11.90	0.00	2.190	14.07	0.00	9.3	90.7	0.0	-1.69	0.94	0.78	0.83	—	13584	1695	24	0	27	0	0	logfile
✘	5GW4	9540	2022-12-19	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.57	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	6EF8	9046	2022-12-14	2018-08-16	3.7	3.63	—	3.6	0.007	1.38	0.0	0.06	14.34	0.01	2.023	12.83	0.00	11.4	88.1	0.5	-4.03	0.76	0.83	2.27	3.6	0.005	0.93	0.0	0.04	17.05	0.00	1.889	15.31	0.55	13.3	86.5	0.2	-2.35	0.59	0.77	0.85	1.95	22911	2849	14	0	42	0	0	logfile
✔	6o77	0639	2022-12-16	2019-03-07	3.2	3.41	—	3.3	0.013	1.01	0.0	0.06	15.24	0.01	1.604	8.04	0.00	6.5	93.4	0.1	-5.77	0.63	0.79	3.12	3.3	0.003	0.67	0.0	0.04	16.88	0.00	2.190	13.04	0.42	6.7	93.2	0.1	-0.38	1.67	0.62	0.79	2.68	28884	3488	8	0	16	0	0	logfile

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