Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6MRD	9196	2022-05-16	2018-10-12	3.82	4.44	—	3.9	0.008	0.88	0.0	0.07	10.50	0.00	1.941	43.72	0.00	9.7	90.1	0.2	-2.91	0.90	0.86	1.24	3.9	0.006	0.74	1.0	0.07	11.48	0.00	1.717	64.75	0.17	10.0	89.9	0.1	-0.02	0.53	0.90	0.87	1.11	34517	4396	21	0	14	0	1477	logfile
✔	6W6W	21567	2022-05-13	2020-03-17	3.0	3.23	—	3.1	0.006	0.99	1.0	0.06	14.87	0.01	2.303	2.74	0.00	12.1	87.6	0.3	-5.09	0.64	0.84	3.49	3.1	0.004	0.75	0.0	0.04	16.42	0.00	2.208	7.30	1.68	10.8	89.1	0.1	-2.57	1.19	0.65	0.86	3.11	10981	1388	6	4	1	0	0	logfile
✔	6Uo8	20822	2022-05-13	2019-10-14	3.63	3.97	—	3.8	0.004	0.73	0.0	0.05	13.47	0.01	2.290	4.07	0.00	7.8	92.2	0.0	-3.75	0.76	0.83	2.87	3.8	0.004	0.68	0.0	0.05	15.37	0.00	2.208	8.32	0.27	7.3	92.7	0.0	-0.93	1.26	0.77	0.83	2.85	10958	1385	7	0	15	0	0	logfile
✔	6WW2	21927	2022-05-12	2020-05-07	3.7	4.24	—	4.0	0.010	1.08	0.0	0.06	14.27	0.01	2.240	5.79	0.00	10.3	89.6	0.1	-2.34	0.68	0.81	1.89	4.0	0.003	0.71	0.0	0.04	15.48	0.00	2.111	10.66	0.12	6.7	93.2	0.1	-0.81	0.45	0.68	0.80	1.42	7594	982	4	0	0	0	0	logfile
✔	6LMT	0919	2022-05-14	2019-12-26	2.66	2.77	2.50	2.7	0.012	1.14	0.0	0.06	11.63	0.01	2.409	4.14	0.00	2.4	97.6	0.0	-4.48	0.52	0.75	5.03	2.7	0.003	0.67	0.0	0.04	16.17	0.00	2.262	10.09	1.45	1.6	98.4	0.0	2.29	0.56	0.70	0.88	3.49	17552	2032	16	0	32	0	0	logfile
✔	6KQ8	0751	2022-05-13	2019-08-16	3.0	4.05	—	3.7	0.004	0.68	3.0	0.13	12.41	0.00	2.049	6.27	0.00	4.3	95.7	0.0	-4.72	0.87	0.86	3.55	3.7	0.005	0.76	2.0	0.13	13.89	0.00	2.051	7.78	0.34	5.2	94.8	0.0	0.07	1.38	0.87	0.87	3.92	62197	3936	24	0	12	0	31225	logfile
✔	6ZBB	11149	2022-05-14	2020-06-08	3.61	3.81	3.50	3.7	0.008	1.03	0.0	0.04	16.65	0.00	1.960	16.56	0.00	6.1	93.9	0.0	-0.21	0.64	0.79	1.49	3.7	0.004	0.66	0.0	0.04	16.38	0.00	2.012	14.47	0.29	3.0	97.0	0.0	1.12	0.54	0.64	0.78	1.34	20936	1328	20	0	5	0	10446	logfile
✔	6KPi	0747	2022-05-13	2019-08-15	2.43	3.50	—	3.0	0.008	0.67	0.0	0.06	11.99	0.00	1.974	5.19	0.00	7.1	92.9	0.0	-4.39	0.85	0.88	4.58	3.0	0.005	0.78	2.0	0.13	14.39	0.00	1.984	5.77	0.62	3.5	96.5	0.0	1.23	0.72	0.85	0.90	4.27	62209	3936	24	0	24	0	31225	logfile
✔	6KPH	0746	2022-05-13	2019-08-15	2.41	3.45	—	3.2	0.014	1.01	0.0	0.15	14.01	0.00	1.838	8.27	0.00	8.5	91.5	0.0	-4.25	0.81	0.85	4.19	3.2	0.004	0.73	0.0	0.15	15.62	0.00	1.777	7.89	1.06	4.1	95.9	0.0	0.19	0.81	0.80	0.86	4.21	62832	3936	24	0	48	0	31212	logfile
✔	6KQJ	0752	2022-05-13	2019-08-18	2.54	3.61	—	3.1	0.018	1.15	0.0	0.06	15.16	0.00	1.899	8.79	0.00	7.3	92.7	0.0	-4.78	0.87	0.88	3.91	3.2	0.004	0.73	1.0	0.12	16.12	0.00	1.788	6.93	0.47	3.4	96.6	0.0	0.87	0.79	0.84	0.86	3.60	63373	3936	24	0	48	0	31225	logfile
✔	6ZS5	11388	2022-05-12	2020-07-15	3.5	4.02	3.66	3.8	0.008	1.01	1.0	0.06	15.42	0.01	2.202	4.52	0.00	4.7	95.3	0.0	-2.98	0.67	0.80	2.81	3.9	0.003	0.71	0.0	0.04	16.58	0.00	2.239	9.05	0.93	3.2	96.8	0.0	-1.66	2.34	0.67	0.79	2.65	2036	257	4	0	7	0	0	logfile
✔	6KPA	0742	2022-05-13	2019-08-15	2.75	3.85	—	3.3	0.015	0.92	0.0	0.06	14.43	0.00	1.899	6.66	0.00	6.7	93.3	0.0	-4.52	0.87	0.88	3.48	3.3	0.005	0.80	1.0	0.13	16.02	0.00	1.851	5.41	0.19	3.7	96.3	0.0	0.59	0.83	0.87	0.90	3.36	62845	3936	24	0	48	0	31225	logfile
✔	6oJQ	20092	2022-05-14	2019-04-12	3.67	3.91	—	3.8	0.009	0.78	0.0	0.04	10.33	0.00	2.000	3.54	0.00	4.0	96.0	0.0	-3.02	0.57	0.74	2.96	3.8	0.003	0.53	0.0	0.04	12.78	0.00	1.853	7.74	0.00	3.6	96.4	0.0	-0.83	2.73	0.65	0.82	3.00	18055	1164	5	0	4	0	8878	logfile
✔	6VFK	21185	2022-05-17	2020-01-05	4.25	4.39	4.20	4.3	0.021	1.41	0.0	0.09	10.30	0.01	2.389	0.89	0.00	1.3	98.7	0.0	2.59	0.84	0.81	—	4.2	0.003	0.57	0.0	0.04	13.24	0.00	2.187	9.56	0.00	1.8	98.0	0.2	3.96	1.03	0.84	0.84	—	37032	4764	24	0	0	0	0	logfile
✔	6VKT	21229	2022-05-15	2020-01-22	2.72	3.21	—	3.1	0.006	0.80	0.0	0.17	13.65	0.01	1.442	19.82	0.00	2.6	97.4	0.0	-1.19	0.73	0.83	2.87	3.1	0.003	0.71	0.0	0.07	15.33	0.00	1.993	5.71	1.72	3.0	97.0	0.0	1.61	0.55	0.69	0.83	2.57	24331	3122	6	0	24	0	0	logfile
✘	6KPJ	0748	2022-05-13	2019-08-15	2.56	3.82	—	3.3	0.014	0.91	0.0	0.06	13.08	0.00	1.218	8.38	0.00	6.7	93.3	0.0	-4.33	0.85	0.86	3.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62845	3936	24	0	48	0	31225	logfile
✔	6ZVH	11456	2022-05-15	2020-07-24	2.9	3.10	2.84	2.8	0.008	0.95	1.0	0.05	15.50	0.01	1.992	5.03	0.00	4.9	94.9	0.2	-2.07	0.54	0.88	3.23	2.8	0.006	0.72	0.0	0.04	16.24	0.01	1.852	9.01	2.15	8.5	91.4	0.2	-0.92	1.10	0.54	0.89	2.84	79014	5074	43	1815	33	0	0	logfile
✔	6KQK	0753	2022-05-13	2019-08-18	2.17	3.14	—	2.8	0.018	1.15	12.0	0.06	15.47	0.00	1.876	11.30	0.00	7.4	92.6	0.0	-4.38	0.82	0.84	4.45	2.8	0.004	0.73	4.0	0.12	16.21	0.00	1.757	9.64	0.72	4.4	95.6	0.0	0.10	0.80	0.82	0.86	4.10	63373	3936	24	0	48	0	31225	logfile
✔	6ZPi	11340	2022-05-13	2020-07-08	4.5	4.63	—	4.4	0.008	1.13	3.0	0.05	15.26	0.01	1.667	14.06	0.00	4.6	95.4	0.0	-0.24	0.77	0.52	—	4.4	0.003	0.70	0.0	0.04	14.24	0.00	1.914	17.72	0.00	4.5	95.5	0.0	0.11	3.39	0.84	0.79	—	9412	1184	6	1	5	0	0	logfile
✔	6WYK	21967	2022-05-12	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.005	0.89	0.0	0.05	16.27	0.01	2.217	12.88	0.31	1.9	98.1	0.0	1.71	0.87	0.61	0.77	—	3083	415	1	0	0	0	0	logfile

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