Table showing results for November 2023

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BP3	30143	2023-11-13	2020-03-21	3.8	4.06	—	4.1	0.007	1.05	0.0	0.06	16.16	0.01	2.235	6.34	0.00	7.4	92.6	0.0	-4.77	0.48	0.75	0.86	4.1	0.004	0.88	0.0	0.05	17.93	0.00	2.102	16.43	0.31	6.3	93.7	0.0	-0.15	1.32	0.49	0.74	1.21	6080	788	2	0	0	0	0	logfile
✔	6QM9	4592	2023-11-15	2019-02-01	3.6	3.72	3.65	3.7	0.005	0.89	0.0	0.05	15.52	0.01	2.275	3.74	0.00	3.2	96.8	0.0	-6.09	0.74	0.84	2.64	3.7	0.003	0.66	0.0	0.04	16.73	0.00	2.167	8.54	0.52	3.5	96.5	0.0	0.54	0.56	0.75	0.84	1.82	10878	1346	4	0	4	0	0	logfile
✔	7QBi	13887	2023-11-13	2021-11-19	3.46	3.72	3.49	3.7	0.008	1.06	0.0	0.05	14.72	0.01	2.231	3.40	0.00	2.8	97.2	0.0	-1.45	0.59	0.76	2.29	3.7	0.003	0.65	0.0	0.04	16.15	0.00	2.217	12.49	0.44	2.1	97.9	0.0	3.07	1.21	0.60	0.81	2.24	4996	622	8	0	16	0	0	logfile
✔	6UZY	20964	2023-11-16	2019-11-15	3.38	3.52	—	3.5	0.012	1.10	7.0	0.07	15.17	0.01	2.265	6.91	0.00	2.6	97.4	0.0	-3.44	0.66	0.82	2.53	3.5	0.002	0.49	0.0	0.04	15.47	0.00	2.300	5.77	0.00	2.2	97.8	0.0	1.87	0.33	0.61	0.81	1.85	16212	1946	14	0	21	0	0	logfile
✔	7UY8	26867	2023-11-14	2022-05-06	4.5	8.56	4.38	4.2	0.003	0.63	1.0	0.05	14.55	0.00	2.207	8.69	0.00	6.1	93.9	0.0	-0.66	0.79	0.60	—	4.4	0.003	0.66	0.0	0.04	14.44	0.00	2.152	20.87	0.00	5.8	94.1	0.1	-0.35	1.42	0.92	0.85	—	9552	1161	5	0	1	0	0	logfile
✔	7WKS	32568	2023-11-13	2022-01-11	3.0	2.57	—	3.0	0.002	0.54	0.0	0.04	13.07	0.00	2.162	7.24	0.00	1.1	98.9	0.0	1.77	0.60	0.81	2.12	3.0	0.003	0.55	0.0	0.04	16.04	0.00	2.218	8.33	0.78	0.8	99.2	0.0	1.85	0.91	0.59	0.83	1.38	5874	754	2	0	0	0	0	logfile
✔	7ZRG	14913	2023-11-15	2022-05-04	3.5	3.19	3.44	3.3	0.004	0.78	0.0	0.05	16.02	0.01	2.291	6.53	0.00	4.5	95.5	0.0	-1.09	0.64	0.80	1.65	3.3	0.002	0.54	0.0	0.04	16.36	0.00	2.155	10.27	0.18	3.8	96.2	0.0	0.49	0.29	0.64	0.82	1.40	11032	1448	6	0	10	0	0	logfile
✔	7Zo9	14844	2023-11-14	2022-04-24	3.5	3.84	3.61	3.9	0.003	0.63	0.0	0.04	15.33	0.00	2.164	10.83	0.00	7.1	92.7	0.2	0.40	0.68	0.79	1.52	3.8	0.003	0.65	0.0	0.04	16.35	0.00	2.227	10.72	0.22	5.6	94.2	0.2	0.56	0.41	0.67	0.79	1.49	8730	1112	4	0	4	0	0	logfile
✔	7ZRH	14914	2023-11-15	2022-05-04	3.4	3.53	3.41	3.5	0.004	0.75	0.0	0.05	15.56	0.01	2.242	6.63	0.00	4.2	95.8	0.0	-1.07	0.71	0.83	2.05	3.5	0.004	0.58	0.0	0.04	15.78	0.00	2.194	10.81	0.18	4.3	95.7	0.0	0.22	1.47	0.71	0.86	1.94	11014	1450	6	0	9	0	0	logfile
✔	6VXP	21447	2023-11-16	2020-02-22	3.39	4.13	—	3.9	0.008	1.13	14.0	0.07	11.36	0.01	2.226	6.82	0.00	4.1	95.9	0.0	-2.30	0.74	0.80	2.28	3.8	0.006	0.72	0.0	0.04	13.59	0.00	2.295	6.06	0.87	3.1	96.9	0.0	2.64	1.77	0.75	0.84	2.12	14819	1939	7	0	0	0	0	logfile
✔	6V0G	20997	2023-11-16	2019-11-18	3.03	3.23	—	3.2	0.008	1.16	0.0	0.07	11.01	0.01	2.289	6.08	0.00	2.4	97.6	0.0	-2.93	0.77	0.82	3.01	3.2	0.003	0.67	0.0	0.05	14.29	0.00	2.173	9.18	0.06	4.0	96.0	0.0	-1.13	2.00	0.77	0.84	3.08	15252	2010	6	0	0	0	0	logfile
✔	7SUN	25442	2023-11-15	2021-11-17	3.6	3.21	—	3.4	0.003	0.69	0.0	0.05	13.91	0.00	2.279	7.34	0.00	3.6	96.4	0.0	0.67	0.63	0.78	2.16	3.4	0.003	0.58	0.0	0.04	15.78	0.00	2.168	11.53	0.17	4.0	96.0	0.0	1.58	0.42	0.64	0.80	2.04	10454	1350	2	0	0	0	0	logfile
✔	6V6D	21071	2023-11-15	2019-12-05	3.77	3.87	—	3.8	0.005	0.95	0.0	0.06	13.31	0.01	2.280	6.03	0.00	2.0	98.0	0.0	-2.17	0.63	0.85	3.10	3.8	0.003	0.69	0.0	0.04	16.07	0.00	2.153	6.45	0.30	2.1	97.9	0.0	1.50	0.66	0.63	0.85	2.95	11739	1463	7	0	0	0	0	logfile
✘	7WJU	32548	2023-11-14	2022-01-07	2.69	2.82	—	2.8	0.007	0.99	0.0	0.07	17.67	0.01	2.325	3.53	0.00	5.3	94.5	0.2	-2.47	0.72	0.81	3.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8322	607	5	158	0	0	0	logfile
✔	7S8o	24899	2023-11-14	2021-09-18	2.58	2.12	2.59	1.9	0.007	0.72	0.0	0.05	13.18	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.002	0.53	0.0	0.04	15.63	0.00	2.207	3.18	0.92	4.4	95.6	0.0	1.05	0.40	0.83	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✔	7ZGo	14709	2023-11-14	2022-04-04	2.55	2.04	2.53	2.6	0.008	1.24	0.0	0.06	16.84	0.00	2.170	9.40	0.00	3.4	96.6	0.0	1.35	0.50	0.76	3.14	2.6	0.002	0.50	0.0	0.04	16.48	0.00	2.254	8.96	0.52	3.1	96.9	0.0	2.18	1.09	0.53	0.79	3.51	7754	940	6	0	21	24	0	logfile
✔	6PX1	20516	2023-11-15	2019-07-24	3.3	3.48	—	3.4	0.006	0.87	0.0	0.05	28.73	0.01	2.228	2.28	0.00	1.9	98.1	0.0	-2.98	0.79	0.83	3.70	3.4	0.003	0.57	0.0	0.03	28.68	0.00	2.144	8.93	0.00	1.4	98.6	0.0	2.54	0.45	0.79	0.84	2.62	11937	752	10	290	0	0	0	logfile
✘	7NNL	12478	2023-11-15	2021-02-25	3.1	3.27	3.06	3.2	0.006	0.91	0.0	0.05	15.46	0.01	2.230	6.05	0.00	3.7	96.3	0.0	-1.05	0.70	0.85	2.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11099	1456	6	0	13	0	0	logfile
✔	8EQ4	28535	2023-11-14	2022-10-07	2.71	3.56	2.72	3.3	0.006	0.74	0.0	0.05	12.36	0.02	2.233	7.56	0.00	1.1	98.9	0.0	1.28	0.68	0.87	4.24	3.3	0.003	0.59	0.0	0.05	14.45	0.00	2.295	8.44	1.59	1.8	98.2	0.0	1.40	1.29	0.68	0.87	4.10	6903	849	6	0	15	0	0	logfile
✔	7RYP	24744	2023-11-15	2021-08-25	4.8	5.38	4.84	6.5	0.015	1.50	0.0	0.07	10.94	0.01	2.098	4.80	0.00	6.2	92.1	1.7	-1.44	0.78	0.73	—	6.6	0.002	0.60	0.0	0.04	12.79	0.00	1.890	10.59	0.00	9.8	90.1	0.1	-0.44	1.01	0.77	0.71	—	11293	725	2	0	0	0	5599	logfile

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