Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V8C	31798	2023-04-27	2021-08-22	3.4	3.98	—	3.8	0.005	0.67	0.0	0.05	13.51	0.00	2.102	10.89	0.00	6.8	93.0	0.2	-0.58	0.82	0.75	1.60	3.7	0.004	0.63	0.0	0.04	15.00	0.00	2.049	10.39	0.22	6.5	93.4	0.2	-0.53	1.62	0.83	0.79	1.59	25197	3088	35	0	75	0	0	logfile
✔	7V77	31761	2023-04-27	2021-08-21	3.3	3.76	—	3.6	0.005	0.65	0.0	0.05	13.41	0.00	2.077	8.53	0.00	6.2	93.7	0.1	-0.49	0.77	0.77	2.10	3.6	0.006	0.67	0.0	0.05	15.11	0.00	2.116	9.11	0.41	6.8	93.1	0.1	-0.71	0.36	0.80	0.81	1.93	25293	3102	36	0	77	0	0	logfile
✔	7T3P	25667	2023-04-24	2021-12-08	3.2	3.52	3.32	3.5	0.004	0.54	0.0	0.04	13.90	0.00	2.019	8.33	0.00	4.1	95.9	0.0	1.75	0.67	0.70	2.04	3.5	0.004	0.65	0.0	0.04	16.16	0.00	2.089	11.93	0.34	3.8	96.2	0.0	1.02	1.82	0.70	0.76	2.15	66992	8188	8	0	88	0	0	logfile
✔	7T3Q	25668	2023-04-25	2021-12-08	3.3	3.64	3.39	3.6	0.004	0.54	0.0	0.04	13.87	0.00	2.049	7.69	0.00	4.5	95.5	0.0	1.74	0.70	0.74	2.52	3.6	0.005	0.70	0.0	0.04	16.43	0.00	2.118	12.11	0.32	4.4	95.6	0.0	0.52	0.83	0.74	0.80	2.04	68124	8336	8	0	88	0	0	logfile
✔	6YG8	10799	2023-04-27	2020-03-27	3.0	3.39	—	3.2	0.005	0.60	0.0	0.05	11.98	0.00	2.166	6.88	0.00	4.7	95.3	0.0	-3.49	0.83	0.86	3.96	3.3	0.004	0.61	0.0	0.05	14.33	0.00	2.167	7.56	1.77	4.2	95.8	0.0	-0.38	1.12	0.84	0.88	3.42	24330	3132	5	0	0	0	0	logfile
✔	6H6F	0150	2023-04-22	2018-07-27	3.72	2.83	—	3.6	0.020	1.68	1.0	0.09	10.88	0.01	2.182	1.08	0.00	1.7	98.1	0.2	0.96	0.83	0.77	1.63	3.5	0.003	0.64	0.0	0.04	15.30	0.00	2.091	11.57	0.19	2.5	97.5	0.0	1.42	0.90	0.84	0.77	1.43	114303	14388	6	0	0	0	0	logfile
✔	7DA7	30624	2023-04-22	2020-10-15	3.47	4.00	—	3.8	0.007	0.97	0.0	0.07	16.87	0.01	2.072	11.32	0.00	9.7	90.2	0.1	-4.59	0.80	0.80	2.80	3.8	0.004	0.66	0.0	0.04	16.85	0.00	2.160	9.63	0.16	8.6	91.4	0.0	-2.00	1.07	0.80	0.83	2.45	11825	1338	3	90	0	0	0	logfile
✔	7V7U	31782	2023-04-27	2021-08-21	3.0	3.56	—	3.4	0.005	0.64	0.0	0.05	13.78	0.00	2.194	7.34	0.00	4.8	95.1	0.1	0.24	0.81	0.84	2.19	3.4	0.004	0.62	0.0	0.05	15.32	0.00	2.161	6.96	1.52	4.3	95.7	0.1	0.20	0.41	0.81	0.85	2.13	25283	3088	41	0	83	0	0	logfile
✔	7K0L	22601	2023-04-20	2020-09-04	3.4	3.83	—	3.7	0.004	0.60	0.0	0.04	12.59	0.00	2.141	4.28	0.00	1.9	98.1	0.0	1.09	0.74	0.87	3.05	3.7	0.003	0.49	0.0	0.04	13.87	0.00	2.212	5.13	0.12	2.0	98.0	0.0	1.07	1.04	0.75	0.88	2.70	7619	964	4	0	2	0	0	logfile
✔	7T6o	25721	2023-04-25	2021-12-14	2.6	2.80	—	2.9	0.004	0.79	0.0	0.05	14.06	0.01	2.302	2.54	0.00	1.3	98.7	0.0	-1.56	0.67	0.84	3.82	2.8	0.002	0.51	0.0	0.04	16.16	0.00	2.191	6.19	1.19	1.2	98.8	0.0	1.76	0.90	0.68	0.87	3.34	19412	2424	4	0	0	0	0	logfile
✘	6VRL	21370	2023-04-20	2020-02-07	3.8	3.98	4.22	3.9	0.003	0.61	0.0	0.04	14.10	0.00	2.159	10.65	0.00	4.9	95.1	0.0	-3.12	0.49	0.69	1.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6141	764	4	0	4	0	0	logfile
✔	7EAZ	31047	2023-04-27	2021-03-08	3.5	4.16	—	4.0	0.004	0.67	0.0	0.05	13.84	0.00	2.146	8.23	0.00	5.3	94.7	0.0	-1.15	0.79	0.77	2.17	4.0	0.003	0.61	0.0	0.04	15.21	0.00	2.165	7.66	0.11	5.2	94.8	0.0	-0.71	0.31	0.80	0.79	1.93	24956	3051	38	0	82	0	0	logfile
✔	7V80	31785	2023-04-20	2021-08-22	3.9	4.10	—	4.0	0.004	0.65	0.0	0.05	15.00	0.00	2.120	8.76	0.00	6.2	93.8	0.0	-0.76	0.65	0.72	1.58	4.0	0.003	0.71	0.0	0.05	16.57	0.00	2.129	11.63	0.43	6.1	93.9	0.0	-0.41	1.17	0.67	0.76	1.33	6609	797	7	0	11	0	0	logfile
✔	6W6W	21567	2023-04-23	2020-03-17	3.0	3.23	—	3.1	0.006	0.99	1.0	0.06	14.87	0.01	2.303	2.69	0.00	12.1	87.6	0.3	-5.09	0.64	0.84	3.49	3.1	0.006	0.79	0.0	0.05	16.39	0.00	2.188	8.07	1.60	11.9	87.8	0.3	-2.68	1.19	0.65	0.87	3.20	10981	1388	6	4	1	0	0	logfile
✔	7T3R	25669	2023-04-26	2021-12-08	3.4	3.68	3.48	3.6	0.004	0.54	0.0	0.04	13.70	0.00	2.035	8.37	0.00	4.7	95.3	0.0	1.52	0.71	0.78	2.05	3.6	0.004	0.65	0.0	0.04	16.69	0.00	2.093	11.56	0.30	4.4	95.6	0.0	0.90	1.38	0.75	0.86	1.84	68780	8444	8	0	88	0	0	logfile
✔	7PW7	13677	2023-04-23	2021-10-06	3.59	3.77	—	3.7	0.003	0.63	0.0	0.17	13.25	0.00	2.020	5.39	0.00	2.9	97.1	0.0	1.95	0.76	0.76	0.92	3.6	0.003	0.53	0.0	0.04	14.58	0.00	1.905	5.91	0.21	3.8	96.2	0.0	1.86	0.94	0.78	0.79	1.11	16227	2056	4	0	199	0	0	logfile
✔	7V76	31760	2023-04-27	2021-08-21	3.2	3.71	—	3.6	0.004	0.58	0.0	0.05	13.70	0.00	2.164	6.14	0.00	4.5	95.5	0.0	0.02	0.78	0.80	2.16	3.6	0.004	0.59	0.0	0.05	15.16	0.00	2.082	6.48	0.22	5.1	94.9	0.1	-0.10	0.34	0.80	0.84	2.03	25219	3088	37	0	77	0	0	logfile
✔	7V78	31762	2023-04-27	2021-08-21	3.4	3.85	—	3.7	0.005	0.63	0.0	0.05	13.65	0.00	2.142	6.37	0.00	5.4	94.5	0.1	-0.20	0.74	0.77	2.64	3.7	0.008	0.73	0.0	0.05	15.13	0.00	2.107	7.37	0.44	6.4	93.5	0.1	-0.70	0.36	0.79	0.84	2.48	25677	3123	41	0	90	0	0	logfile
✔	6VRH	21368	2023-04-20	2020-02-07	3.3	3.68	3.56	3.6	0.004	0.60	0.0	0.04	12.99	0.00	2.212	9.91	0.00	5.1	94.9	0.0	-3.01	0.45	0.70	2.12	3.6	0.003	0.57	0.0	0.04	15.00	0.00	2.158	9.18	0.00	5.3	94.7	0.0	-0.60	0.58	0.48	0.73	1.90	6142	764	4	0	5	0	0	logfile
✔	7Li8	23363	2023-04-20	2021-01-26	3.9	4.37	—	4.3	0.002	0.60	0.0	0.04	10.78	0.00	2.230	6.92	0.00	5.3	94.7	0.0	-3.23	0.62	0.72	1.26	4.3	0.003	0.72	0.0	0.04	14.55	0.00	2.204	9.66	0.78	7.8	92.2	0.0	-1.32	2.53	0.68	0.76	1.58	6181	767	5	0	14	0	0	logfile

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