The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6RLB | 4918 | 2022-12-14 | 2019-05-01 | 4.5 | 4.85 | 4.49 | 4.3 | 0.007 | 0.95 | 0.0 | 0.06 | 4.70 | 0.00 | 2.082 | 0.71 | 0.00 | 4.0 | 95.9 | 0.0 | -1.08 | 0.80 | 0.63 | — | 4.2 | 0.003 | 0.72 | 0.0 | 0.04 | 5.19 | 0.00 | 2.243 | 3.44 | 0.00 | 11.3 | 88.6 | 0.0 | -0.76 | 1.85 | 0.86 | 0.66 | — | 20407 | 4122 | 14 | 0 | 0 | 0 | 0 | logfile |
✘ | 6B3Q | 7041 | 2022-12-18 | 2017-09-22 | 3.7 | 3.84 | 3.74 | 3.7 | 0.005 | 1.03 | 0.0 | 0.06 | 12.29 | 0.01 | 2.212 | 4.15 | 0.00 | 2.6 | 97.4 | 0.0 | -4.53 | 0.80 | 0.78 | 1.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15727 | 1929 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCL | 6526 | 2022-12-15 | 2015-12-21 | 4.0 | 4.03 | — | 4.0 | 0.018 | 1.83 | 9.0 | 0.09 | 9.75 | 0.01 | 2.379 | 2.99 | 0.00 | 5.2 | 94.3 | 0.6 | -0.72 | 0.71 | 0.74 | — | 4.0 | 0.004 | 0.75 | 0.0 | 0.04 | 14.71 | 0.00 | 2.130 | 13.44 | 0.40 | 7.4 | 92.5 | 0.1 | -0.55 | 1.78 | 0.69 | 0.69 | — | 24822 | 3201 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N37 | 9339 | 2022-12-11 | 2018-11-14 | 3.8 | 3.51 | — | 4.2 | 0.009 | 1.42 | 0.0 | 0.06 | 16.98 | 0.01 | 2.399 | 13.15 | 0.00 | 14.7 | 85.3 | 0.0 | -5.92 | 0.51 | 0.77 | 3.18 | 3.6 | 0.004 | 0.78 | 0.0 | 0.04 | 18.43 | 0.00 | 2.266 | 20.72 | 0.80 | 11.2 | 88.8 | 0.0 | -5.14 | 0.89 | 0.52 | 0.77 | 2.42 | 2580 | 360 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N3C | 0334 | 2022-12-11 | 2018-11-14 | 3.3 | 3.53 | — | 3.5 | 0.009 | 1.31 | 0.0 | 0.07 | 14.00 | 0.00 | 2.387 | 18.47 | 0.00 | 11.5 | 88.5 | 0.0 | -5.01 | 0.52 | 0.83 | 4.06 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 15.70 | 0.00 | 2.372 | 12.69 | 1.58 | 8.2 | 91.8 | 0.0 | -3.77 | 2.40 | 0.52 | 0.83 | 3.93 | 4260 | 640 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UFR | 20759 | 2022-12-11 | 2019-09-24 | 2.5 | 2.80 | — | 2.8 | 0.012 | 0.96 | 0.0 | 0.07 | 13.71 | 0.01 | 2.209 | 5.48 | 0.00 | 6.6 | 93.4 | 0.0 | -1.99 | 0.50 | 0.87 | 5.55 | 2.8 | 0.004 | 0.63 | 0.0 | 0.06 | 17.00 | 0.00 | 2.402 | 2.46 | 2.95 | 4.8 | 95.2 | 0.0 | -0.87 | 0.98 | 0.51 | 0.89 | 5.06 | 4420 | 630 | 20 | 0 | 0 | 90 | 0 | logfile |
✔ | 6GJZ | 0012 | 2022-12-12 | 2018-05-17 | 4.06 | 4.32 | 3.49 | 4.1 | 0.011 | 1.11 | 0.0 | 0.05 | 10.30 | 0.01 | 2.008 | 14.06 | 0.00 | 10.8 | 88.9 | 0.3 | -4.09 | 0.66 | 0.79 | — | 4.1 | 0.004 | 0.79 | 0.0 | 0.04 | 11.98 | 0.00 | 1.992 | 29.46 | 0.00 | 11.3 | 88.6 | 0.1 | -0.92 | 1.53 | 0.67 | 0.80 | — | 10503 | 682 | 4 | 28 | 2 | 0 | 4402 | logfile |
✔ | 6MHV | 9119 | 2022-12-19 | 2018-09-18 | 3.5 | 3.64 | 3.43 | 3.6 | 0.006 | 0.85 | 4.0 | 0.13 | 7.65 | 0.00 | 1.624 | 6.49 | 0.00 | 4.1 | 95.9 | 0.0 | -1.96 | 0.75 | 0.80 | 3.89 | 3.6 | 0.003 | 0.65 | 0.0 | 0.12 | 13.50 | 0.00 | 1.948 | 6.18 | 0.06 | 3.3 | 96.7 | 0.0 | 1.94 | 1.85 | 0.76 | 0.82 | 3.89 | 35496 | 2452 | 4 | 0 | 0 | 0 | 17152 | logfile |
✔ | 6N3B | 9350 | 2022-12-11 | 2018-11-14 | 3.8 | 3.75 | — | 4.0 | 0.010 | 1.21 | 0.0 | 0.05 | 11.40 | 0.01 | 2.253 | 20.70 | 0.00 | 13.7 | 86.3 | 0.0 | -5.17 | 0.41 | 0.71 | 2.90 | 4.0 | 0.005 | 0.87 | 0.0 | 0.04 | 16.51 | 0.01 | 2.102 | 26.34 | 1.51 | 13.2 | 86.8 | 0.0 | -5.29 | 1.48 | 0.42 | 0.71 | 1.88 | 2735 | 385 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VMS | 8712 | 2022-12-14 | 2017-04-28 | 3.7 | 4.28 | — | 4.2 | 0.007 | 1.47 | 15.0 | 0.07 | 12.69 | 0.00 | 2.234 | 5.32 | 0.00 | 3.2 | 96.8 | 0.0 | 2.06 | 0.53 | 0.66 | 1.58 | 4.2 | 0.003 | 0.71 | 0.0 | 0.04 | 15.88 | 0.00 | 2.134 | 10.69 | 0.61 | 2.4 | 97.6 | 0.0 | 3.13 | 0.77 | 0.60 | 0.80 | 1.04 | 18645 | 2420 | 10 | 0 | 15 | 0 | 0 | logfile |
✔ | 6PES | 20331 | 2022-12-11 | 2019-06-20 | 3.6 | 3.82 | — | 4.0 | 0.009 | 0.70 | 0.0 | 0.06 | 12.87 | 0.01 | 2.432 | 11.45 | 0.00 | 12.3 | 87.7 | 0.0 | -1.79 | 0.38 | 0.78 | 1.73 | 4.0 | 0.003 | 0.59 | 0.0 | 0.05 | 14.73 | 0.00 | 2.341 | 7.11 | 0.00 | 6.5 | 93.5 | 0.0 | -2.43 | 0.56 | 0.43 | 0.81 | 2.65 | 4040 | 590 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N3A | 9349 | 2022-12-11 | 2018-11-14 | 3.3 | 3.44 | — | 3.6 | 0.008 | 1.14 | 0.0 | 0.05 | 14.53 | 0.01 | 2.469 | 17.25 | 0.00 | 8.9 | 91.1 | 0.0 | -5.23 | 0.49 | 0.76 | 3.75 | 3.6 | 0.005 | 0.96 | 0.0 | 0.04 | 19.28 | 0.00 | 2.210 | 17.25 | 2.05 | 10.2 | 89.8 | 0.0 | -5.15 | 1.99 | 0.51 | 0.79 | 2.70 | 4310 | 600 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PEo | 20328 | 2022-12-11 | 2019-06-20 | 3.3 | 3.52 | — | 3.6 | 0.003 | 0.54 | 0.0 | 0.05 | 13.06 | 0.01 | 2.492 | 10.62 | 0.00 | 9.7 | 90.3 | 0.0 | -1.64 | 0.41 | 0.82 | 3.20 | 3.6 | 0.006 | 0.64 | 0.0 | 0.06 | 15.74 | 0.00 | 2.435 | 9.07 | 0.00 | 8.1 | 91.9 | 0.0 | -2.61 | 1.64 | 0.42 | 0.83 | 4.88 | 2205 | 320 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DJN | 7937 | 2022-12-12 | 2018-05-25 | 3.1 | 3.26 | — | 3.2 | 0.011 | 0.95 | 0.0 | 0.06 | 10.67 | 0.01 | 2.106 | 5.53 | 0.00 | 5.4 | 94.6 | 0.0 | -4.61 | 0.69 | 0.86 | 4.00 | 3.1 | 0.003 | 0.64 | 0.0 | 0.04 | 14.36 | 0.00 | 1.964 | 8.36 | 0.00 | 3.9 | 96.1 | 0.0 | -0.12 | 0.64 | 0.70 | 0.88 | 2.68 | 11768 | 1488 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6V6B | 21067 | 2022-12-18 | 2019-12-04 | 3.8 | 3.96 | — | 3.9 | 0.005 | 0.55 | 0.0 | 0.04 | 14.36 | 0.00 | 2.211 | 5.44 | 0.00 | 5.1 | 94.9 | 0.0 | -5.29 | 0.54 | 0.84 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9115 | 1111 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PCi | 20301 | 2022-12-14 | 2019-06-17 | 4.12 | 4.25 | — | 4.1 | 0.009 | 1.02 | 0.0 | 0.06 | 8.91 | 0.01 | 2.268 | 6.45 | 0.00 | 6.8 | 93.2 | 0.0 | -2.72 | 0.85 | 0.84 | — | 4.1 | 0.003 | 0.74 | 0.0 | 0.05 | 12.73 | 0.00 | 2.103 | 16.72 | 0.05 | 6.4 | 93.6 | 0.0 | -0.80 | 0.84 | 0.85 | 0.84 | — | 18828 | 2382 | 24 | 0 | 27 | 0 | 0 | logfile |
✔ | 6DZM | 8936 | 2022-12-13 | 2018-07-05 | 4.29 | 4.66 | — | 4.3 | 0.008 | 0.91 | 0.0 | 0.05 | 9.66 | 0.01 | 2.058 | 8.59 | 0.00 | 13.6 | 86.4 | 0.0 | -4.76 | 0.77 | 0.80 | — | 4.3 | 0.003 | 0.70 | 0.0 | 0.04 | 11.90 | 0.00 | 2.190 | 14.07 | 0.00 | 9.3 | 90.7 | 0.0 | -1.69 | 0.94 | 0.78 | 0.83 | — | 13584 | 1695 | 24 | 0 | 27 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2022-12-19 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.57 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EF8 | 9046 | 2022-12-14 | 2018-08-16 | 3.7 | 3.63 | — | 3.6 | 0.007 | 1.38 | 0.0 | 0.06 | 14.34 | 0.01 | 2.023 | 12.83 | 0.00 | 11.4 | 88.1 | 0.5 | -4.03 | 0.76 | 0.83 | 2.27 | 3.6 | 0.005 | 0.93 | 0.0 | 0.04 | 17.05 | 0.00 | 1.889 | 15.31 | 0.55 | 13.3 | 86.5 | 0.2 | -2.35 | 0.59 | 0.77 | 0.85 | 1.95 | 22911 | 2849 | 14 | 0 | 42 | 0 | 0 | logfile |
✔ | 6o77 | 0639 | 2022-12-16 | 2019-03-07 | 3.2 | 3.41 | — | 3.3 | 0.013 | 1.01 | 0.0 | 0.06 | 15.24 | 0.01 | 1.604 | 8.04 | 0.00 | 6.5 | 93.4 | 0.1 | -5.77 | 0.63 | 0.79 | 3.12 | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 16.88 | 0.00 | 2.190 | 13.04 | 0.42 | 6.7 | 93.2 | 0.1 | -0.38 | 1.67 | 0.62 | 0.79 | 2.68 | 28884 | 3488 | 8 | 0 | 16 | 0 | 0 | logfile |