Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6S6S	10104	2021-09-03	2019-07-03	3.9	4.02	4.04	3.9	0.003	0.54	0.0	0.44	13.16	0.00	2.057	8.41	0.00	5.4	94.6	0.0	-3.05	0.72	0.84	1.45	3.9	0.002	0.56	0.0	0.04	15.39	0.00	2.155	7.85	0.25	3.4	96.6	0.0	-0.29	3.24	0.72	0.83	1.36	60044	7752	16	0	20	0	0	logfile
✔	6PBX	20294	2021-09-04	2019-06-14	4.0	4.12	—	4.0	0.006	0.83	0.0	0.05	14.04	0.01	2.264	6.05	0.00	3.8	96.2	0.0	-3.07	0.68	0.67	—	4.0	0.003	0.70	0.0	0.04	15.38	0.00	2.122	13.13	0.19	4.5	95.5	0.0	1.33	0.78	0.73	0.78	—	23028	3152	8	0	0	0	0	logfile
✔	6G8Z	4362	2021-09-03	2018-04-10	3.66	3.88	3.72	3.8	0.005	0.77	0.0	0.04	8.70	0.00	2.362	0.22	0.00	3.8	96.2	0.0	-0.63	0.66	0.79	4.14	3.8	0.005	0.62	0.0	0.04	13.49	0.00	2.169	5.80	0.23	3.5	96.5	0.0	2.24	1.28	0.72	0.86	2.76	15966	1908	6	0	0	0	0	logfile
✔	3JCi	6555	2021-09-06	2015-12-13	2.9	3.14	—	3.1	0.010	0.91	0.0	0.05	8.65	0.01	2.239	18.52	0.00	2.1	97.3	0.5	-2.08	0.75	0.85	5.77	3.1	0.003	0.65	0.0	0.04	16.06	0.00	2.233	6.20	1.54	2.5	97.5	0.0	-0.70	0.70	0.69	0.85	4.69	93420	11400	60	0	0	0	0	logfile
✔	6PWE	20506	2021-09-03	2019-07-22	3.95	4.04	—	4.0	0.010	0.93	0.0	0.05	27.27	0.01	2.264	5.37	0.00	7.4	92.3	0.3	-6.65	0.70	0.80	2.98	4.0	0.005	0.70	0.0	0.04	28.69	0.01	2.063	12.93	0.97	4.9	95.1	0.0	-1.96	1.44	0.70	0.81	1.70	11923	744	10	294	0	0	0	logfile
✔	6SE6	10152	2021-09-03	2019-07-29	3.5	4.16	—	3.9	0.010	1.00	0.0	0.06	28.15	0.01	2.247	3.86	0.00	1.2	98.8	0.0	-3.83	0.88	0.85	1.92	3.9	0.004	0.65	0.0	0.03	28.64	0.00	2.070	13.64	1.25	2.1	97.9	0.0	1.50	0.61	0.86	0.84	1.38	12068	771	11	290	0	0	0	logfile
✔	5NP6	3618	2021-09-09	2017-04-13	3.6	4.23	3.52	3.6	0.004	0.65	0.0	0.06	15.52	0.02	0.612	13.44	0.00	14.9	84.5	0.6	-4.69	0.90	0.87	2.11	3.6	0.004	0.73	1.0	0.04	16.07	0.01	1.994	15.84	0.76	9.1	90.5	0.4	-1.29	1.68	0.92	0.90	1.63	146883	5995	57	4667	0	0	0	logfile
✔	6L7o	0849	2021-09-05	2019-11-02	3.2	3.37	—	3.5	0.076	1.23	0.0	1.05	14.00	0.00	1.354	23.56	0.00	5.3	94.7	0.0	-2.60	0.57	0.70	0.86	3.4	0.009	1.81	0.0	0.28	16.34	0.01	2.089	26.31	0.44	6.5	93.5	0.0	0.51	0.79	0.66	0.83	1.58	35037	4120	34	0	83	0	0	logfile
✔	6R8F	4759	2021-09-03	2019-04-01	3.8	3.84	3.74	3.8	0.013	1.15	0.0	0.07	10.25	0.01	2.059	3.60	0.00	11.0	89.0	0.0	-5.94	0.78	0.79	3.13	3.8	0.004	0.74	0.0	0.04	14.79	0.01	2.089	8.39	0.27	5.9	94.1	0.0	-0.94	1.38	0.79	0.79	1.84	15810	2000	10	0	166	0	0	logfile
✔	5WJU	8848	2021-09-08	2017-07-24	4.3	3.65	—	3.8	0.006	0.88	0.0	0.05	8.70	0.00	2.019	4.67	0.00	9.3	90.7	0.0	-3.16	0.57	0.73	—	3.6	0.003	0.63	0.0	0.04	14.25	0.00	1.893	18.47	0.02	9.4	90.6	0.0	1.20	1.96	0.59	0.77	—	208012	13892	46	0	0	0	103730	logfile
✔	6V00	20966	2021-09-03	2019-11-16	3.1	3.54	—	3.5	0.007	0.95	0.0	0.05	10.23	0.01	2.315	2.58	0.00	4.3	95.5	0.2	-3.43	0.67	0.83	3.07	3.4	0.003	0.56	0.0	0.04	14.90	0.00	2.234	4.97	0.55	3.0	97.0	0.0	2.53	1.64	0.69	0.85	2.21	17460	2180	16	0	8	0	0	logfile
✔	6CNM	7537	2021-09-03	2018-03-08	3.4	3.51	—	3.5	0.009	1.00	0.0	0.05	10.72	0.01	2.331	1.47	0.00	4.3	95.7	0.0	-4.29	0.64	0.84	3.41	3.5	0.002	0.52	0.0	0.04	13.83	0.00	2.205	4.29	0.28	2.7	97.3	0.0	2.48	0.60	0.64	0.85	2.16	12541	1700	12	0	17	0	0	logfile
✔	5Z1W	6877	2021-09-03	2017-12-28	3.38	3.50	—	3.5	0.011	0.92	0.0	0.06	9.89	0.01	2.239	10.43	0.00	4.7	95.3	0.0	-3.34	0.65	0.84	4.86	3.5	0.003	0.61	0.0	0.04	14.47	0.00	2.119	6.98	0.28	2.7	97.3	0.0	1.65	0.74	0.68	0.86	3.14	13824	1716	8	0	12	0	0	logfile
✔	6CS1	7579	2021-09-04	2018-03-19	4.6	4.79	4.84	6.8	0.005	0.85	0.0	0.05	8.80	0.01	2.229	7.26	0.00	7.2	92.8	0.0	-4.20	0.61	0.31	—	4.6	0.005	0.88	0.0	0.05	11.64	0.01	2.034	26.20	0.00	10.3	89.7	0.0	-2.65	2.44	0.73	0.63	—	25995	3202	6	0	75	0	0	logfile
✔	6UiX	20790	2021-09-06	2019-10-01	3.5	4.38	—	3.7	0.009	0.96	0.0	0.05	13.69	0.01	2.204	8.14	0.00	4.0	96.0	0.0	-3.80	0.68	0.83	1.92	3.7	0.004	0.65	0.0	0.04	14.64	0.00	2.271	12.93	0.18	3.6	96.4	0.0	2.66	2.34	0.68	0.83	1.70	44198	6050	22	0	0	0	0	logfile
✔	6RiU	4898	2021-09-02	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.66	0.0	0.03	16.44	0.00	2.076	12.47	0.66	3.9	96.1	0.0	-0.19	1.47	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	6UQF	20846	2021-09-03	2019-10-19	3.04	3.54	3.09	3.5	0.003	0.56	0.0	0.04	13.01	0.00	2.135	7.64	0.00	4.0	96.0	0.0	-0.89	0.55	0.70	2.53	3.5	0.003	0.57	0.0	0.04	14.99	0.00	2.227	5.82	0.06	3.4	96.6	0.0	2.49	0.41	0.66	0.80	2.19	16528	2124	8	0	8	0	0	logfile
✔	6T72	10389	2021-09-04	2019-10-21	3.7	3.79	—	3.8	0.013	1.64	0.0	0.11	14.69	0.02	2.167	4.27	0.00	2.1	97.9	0.0	-2.53	0.76	0.87	2.40	3.7	0.004	0.60	0.0	0.04	15.01	0.00	2.077	3.64	0.26	3.2	96.8	0.0	1.38	1.25	0.78	0.88	1.84	26278	3388	14	0	210	0	0	logfile
✔	6PEQ	20330	2021-09-05	2019-06-20	2.97	3.45	—	3.4	0.015	1.42	0.0	0.30	14.80	0.02	2.063	6.05	0.00	5.7	94.3	0.0	-3.10	0.66	0.76	2.11	3.4	0.003	0.79	0.0	0.09	15.33	0.00	2.085	14.36	1.84	4.9	95.1	0.0	0.66	0.92	0.68	0.79	2.16	31523	2044	16	0	30	0	15197	logfile
✔	6UD8	20734	2021-09-05	2019-09-18	3.2	3.59	—	3.5	0.014	1.19	0.0	0.31	13.37	0.01	2.169	5.93	0.00	5.6	94.4	0.0	-3.31	0.66	0.77	2.09	3.5	0.003	0.78	0.0	0.10	14.74	0.00	2.090	10.69	0.18	5.1	94.9	0.0	0.66	1.78	0.68	0.79	2.34	31662	2044	16	0	12	0	15482	logfile

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