Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6C0W	7326	2022-12-18	2018-01-02	4.0	4.10	3.87	4.0	0.006	0.81	0.0	0.05	27.80	0.01	2.107	4.30	0.00	4.9	95.1	0.0	-4.19	0.80	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13122	925	11	278	0	0	0	logfile
✔	6DBo	7846	2022-12-13	2018-05-03	4.4	4.68	—	4.4	0.009	1.34	0.0	0.07	22.20	0.01	1.874	25.55	0.00	6.8	92.4	0.7	-4.15	0.86	0.82	—	4.4	0.005	0.83	0.0	0.04	19.77	0.00	2.070	25.77	0.00	6.1	93.9	0.0	-1.26	1.57	0.87	0.84	—	16820	1786	10	128	6	0	0	logfile
✔	6SEG	10155	2022-12-12	2019-07-30	3.1	3.19	—	3.2	0.006	0.86	0.0	0.05	27.88	0.01	2.283	3.10	0.00	1.3	98.7	0.0	-3.47	0.66	0.79	3.38	3.2	0.004	0.60	0.0	0.03	29.04	0.00	2.004	8.15	0.17	1.5	98.5	0.0	1.18	0.37	0.66	0.81	2.48	11689	728	10	290	0	0	0	logfile
✘	6CB8	7449	2022-12-19	2018-02-02	3.8	4.12	—	4.3	0.006	0.84	0.0	0.05	11.53	0.01	0.173	75.29	0.00	18.6	81.4	0.0	-5.72	0.54	0.26	0.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103936	6440	28	0	28	0	52304	logfile
✔	6SB3	10134	2022-12-15	2019-07-18	3.5	3.63	3.51	3.7	0.002	0.56	0.0	0.04	12.95	0.00	2.104	13.36	0.00	4.9	95.1	0.0	-2.84	0.68	0.71	1.27	3.7	0.005	0.71	0.0	0.05	16.11	0.01	2.025	19.45	0.76	8.0	92.0	0.0	-1.75	1.63	0.71	0.77	0.99	75712	9664	32	0	32	0	0	logfile
✔	6i2N	0333	2022-12-14	2018-11-01	3.3	3.45	3.33	3.4	0.007	0.97	0.0	0.05	11.09	0.01	2.323	2.82	0.00	6.0	94.0	0.0	-3.81	0.75	0.79	2.55	3.4	0.003	0.58	0.0	0.04	14.79	0.00	2.134	8.41	0.39	4.5	95.5	0.0	0.62	2.27	0.77	0.84	1.84	18970	2352	14	21	0	0	0	logfile
✔	6J99	9783	2022-12-14	2019-01-22	4.1	4.24	—	4.2	0.008	0.98	1.0	0.05	26.78	0.01	2.204	7.85	0.00	8.0	92.0	0.0	-2.88	0.65	0.52	—	4.1	0.004	0.74	0.0	0.04	27.20	0.00	2.128	19.50	0.20	4.7	95.3	0.0	-0.39	2.13	0.77	0.77	—	15266	1164	12	289	0	0	0	logfile
✔	5iS0	8119	2022-12-12	2016-03-15	3.43	3.36	3.37	3.2	0.015	1.24	0.0	0.06	10.52	0.01	1.283	5.90	0.00	10.1	89.7	0.3	-5.27	0.63	0.73	2.61	3.2	0.003	0.74	0.0	0.04	14.34	0.00	2.146	10.98	0.28	5.6	94.4	0.0	-0.29	1.48	0.63	0.82	2.52	11808	1576	8	0	4	0	0	logfile
✘	6RHZ	4883	2022-12-19	2019-04-23	3.2	3.48	3.18	3.4	0.009	1.39	0.0	0.11	19.86	0.02	1.172	4.66	0.00	3.7	96.2	0.1	-3.89	0.70	0.76	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53055	2783	20	0	193	0	21167	logfile
✔	6G4S	4348	2022-12-22	2018-03-28	4.0	4.37	—	3.9	0.005	1.05	0.0	0.07	21.38	0.01	1.911	1.77	0.00	8.6	91.2	0.2	-3.72	0.72	0.69	—	3.9	0.004	0.71	0.0	0.03	21.09	0.00	2.009	7.98	0.00	11.6	88.4	0.0	-0.68	2.10	0.81	0.73	—	48967	5224	33	1613	768	0	0	logfile
✔	6PP6	20420	2022-12-16	2019-07-05	4.28	4.54	—	4.3	0.004	0.71	0.0	0.04	11.88	0.00	2.179	3.17	0.00	0.6	99.4	0.0	-1.13	0.79	0.78	—	4.3	0.003	0.56	0.0	0.04	12.53	0.00	1.940	11.13	0.06	3.2	96.8	0.0	-0.78	1.51	0.81	0.81	—	32106	2062	13	0	12	0	16126	logfile
✔	5VLZ	8709	2022-12-17	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.66	—	4.4	0.003	0.81	0.0	0.00	5.63	0.00	2.281	1.18	0.00	6.0	94.0	0.0	-1.57	1.65	0.83	0.78	—	96897	24179	181	0	0	0	0	logfile
✔	6XWQ	10635	2022-12-12	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.78	0.0	0.04	15.52	0.00	2.168	13.94	0.20	4.0	96.0	0.0	1.04	1.17	0.72	0.84	0.66	9572	1281	6	0	0	0	0	logfile
✔	6R94	4768	2022-12-14	2019-04-02	3.5	2.44	—	3.6	0.012	1.00	1.0	0.07	26.38	0.01	2.114	1.78	0.00	3.0	96.6	0.4	0.29	0.74	0.70	2.23	3.5	0.004	0.62	1.0	0.05	26.92	0.00	2.020	4.67	0.00	3.3	96.7	0.0	2.50	1.02	0.76	0.72	1.86	22367	803	10	290	0	0	9995	logfile
✘	6RKV	4912	2022-12-18	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	12.80	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15460	1784	8	64	0	0	0	logfile
✔	6UES	20755	2022-12-11	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6G4W	4349	2022-12-21	2018-03-28	4.5	5.22	—	4.4	0.006	1.11	2.0	0.07	21.52	0.01	0.760	5.05	0.00	8.2	91.5	0.3	-3.51	0.65	0.51	—	4.3	0.004	0.70	0.0	0.03	23.60	0.00	2.004	11.37	0.00	9.6	90.3	0.1	-1.00	2.53	0.87	0.62	—	45223	4589	31	1563	768	0	0	logfile
✔	6E0G	8947	2022-12-13	2018-07-06	2.9	2.97	—	3.0	0.010	1.03	0.0	0.06	10.04	0.01	2.030	9.42	0.00	6.7	92.6	0.6	-3.72	0.62	0.71	2.41	3.0	0.004	0.72	0.0	0.05	14.07	0.00	2.176	16.85	2.32	6.7	93.3	0.0	-0.64	2.43	0.62	0.73	2.79	12910	1650	10	0	0	0	0	logfile
✔	6GYN	0093	2022-12-13	2018-06-30	3.4	3.66	3.52	3.6	0.008	0.85	0.0	0.05	9.32	0.01	2.273	3.32	0.00	4.7	95.3	0.0	-2.56	0.66	0.83	3.51	3.6	0.002	0.54	0.0	0.04	13.23	0.00	2.248	7.67	0.17	2.4	97.6	0.0	2.34	0.49	0.64	0.83	2.28	16932	1980	8	0	36	0	0	logfile
✔	6i3N	4405	2022-12-12	2018-11-06	3.1	3.19	2.96	3.2	0.007	1.05	0.0	0.05	11.33	0.01	2.410	3.63	0.00	7.9	92.1	0.0	-5.28	0.58	0.82	1.77	3.2	0.006	0.70	0.0	0.04	17.04	0.00	2.156	7.95	0.71	5.6	94.4	0.0	1.75	1.33	0.60	0.86	0.96	10660	1339	13	0	0	0	0	logfile

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