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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6C0W | 7326 | 2022-12-18 | 2018-01-02 | 4.0 | 4.10 | 3.87 | 4.0 | 0.006 | 0.81 | 0.0 | 0.05 | 27.80 | 0.01 | 2.107 | 4.30 | 0.00 | 4.9 | 95.1 | 0.0 | -4.19 | 0.80 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13122 | 925 | 11 | 278 | 0 | 0 | 0 | logfile |
✔ | 6DBo | 7846 | 2022-12-13 | 2018-05-03 | 4.4 | 4.68 | — | 4.4 | 0.009 | 1.34 | 0.0 | 0.07 | 22.20 | 0.01 | 1.874 | 25.55 | 0.00 | 6.8 | 92.4 | 0.7 | -4.15 | 0.86 | 0.82 | — | 4.4 | 0.005 | 0.83 | 0.0 | 0.04 | 19.77 | 0.00 | 2.070 | 25.77 | 0.00 | 6.1 | 93.9 | 0.0 | -1.26 | 1.57 | 0.87 | 0.84 | — | 16820 | 1786 | 10 | 128 | 6 | 0 | 0 | logfile |
✔ | 6SEG | 10155 | 2022-12-12 | 2019-07-30 | 3.1 | 3.19 | — | 3.2 | 0.006 | 0.86 | 0.0 | 0.05 | 27.88 | 0.01 | 2.283 | 3.10 | 0.00 | 1.3 | 98.7 | 0.0 | -3.47 | 0.66 | 0.79 | 3.38 | 3.2 | 0.004 | 0.60 | 0.0 | 0.03 | 29.04 | 0.00 | 2.004 | 8.15 | 0.17 | 1.5 | 98.5 | 0.0 | 1.18 | 0.37 | 0.66 | 0.81 | 2.48 | 11689 | 728 | 10 | 290 | 0 | 0 | 0 | logfile |
✘ | 6CB8 | 7449 | 2022-12-19 | 2018-02-02 | 3.8 | 4.12 | — | 4.3 | 0.006 | 0.84 | 0.0 | 0.05 | 11.53 | 0.01 | 0.173 | 75.29 | 0.00 | 18.6 | 81.4 | 0.0 | -5.72 | 0.54 | 0.26 | 0.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103936 | 6440 | 28 | 0 | 28 | 0 | 52304 | logfile |
✔ | 6SB3 | 10134 | 2022-12-15 | 2019-07-18 | 3.5 | 3.63 | 3.51 | 3.7 | 0.002 | 0.56 | 0.0 | 0.04 | 12.95 | 0.00 | 2.104 | 13.36 | 0.00 | 4.9 | 95.1 | 0.0 | -2.84 | 0.68 | 0.71 | 1.27 | 3.7 | 0.005 | 0.71 | 0.0 | 0.05 | 16.11 | 0.01 | 2.025 | 19.45 | 0.76 | 8.0 | 92.0 | 0.0 | -1.75 | 1.63 | 0.71 | 0.77 | 0.99 | 75712 | 9664 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 6i2N | 0333 | 2022-12-14 | 2018-11-01 | 3.3 | 3.45 | 3.33 | 3.4 | 0.007 | 0.97 | 0.0 | 0.05 | 11.09 | 0.01 | 2.323 | 2.82 | 0.00 | 6.0 | 94.0 | 0.0 | -3.81 | 0.75 | 0.79 | 2.55 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 14.79 | 0.00 | 2.134 | 8.41 | 0.39 | 4.5 | 95.5 | 0.0 | 0.62 | 2.27 | 0.77 | 0.84 | 1.84 | 18970 | 2352 | 14 | 21 | 0 | 0 | 0 | logfile |
✔ | 6J99 | 9783 | 2022-12-14 | 2019-01-22 | 4.1 | 4.24 | — | 4.2 | 0.008 | 0.98 | 1.0 | 0.05 | 26.78 | 0.01 | 2.204 | 7.85 | 0.00 | 8.0 | 92.0 | 0.0 | -2.88 | 0.65 | 0.52 | — | 4.1 | 0.004 | 0.74 | 0.0 | 0.04 | 27.20 | 0.00 | 2.128 | 19.50 | 0.20 | 4.7 | 95.3 | 0.0 | -0.39 | 2.13 | 0.77 | 0.77 | — | 15266 | 1164 | 12 | 289 | 0 | 0 | 0 | logfile |
✔ | 5iS0 | 8119 | 2022-12-12 | 2016-03-15 | 3.43 | 3.36 | 3.37 | 3.2 | 0.015 | 1.24 | 0.0 | 0.06 | 10.52 | 0.01 | 1.283 | 5.90 | 0.00 | 10.1 | 89.7 | 0.3 | -5.27 | 0.63 | 0.73 | 2.61 | 3.2 | 0.003 | 0.74 | 0.0 | 0.04 | 14.34 | 0.00 | 2.146 | 10.98 | 0.28 | 5.6 | 94.4 | 0.0 | -0.29 | 1.48 | 0.63 | 0.82 | 2.52 | 11808 | 1576 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6RHZ | 4883 | 2022-12-19 | 2019-04-23 | 3.2 | 3.48 | 3.18 | 3.4 | 0.009 | 1.39 | 0.0 | 0.11 | 19.86 | 0.02 | 1.172 | 4.66 | 0.00 | 3.7 | 96.2 | 0.1 | -3.89 | 0.70 | 0.76 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53055 | 2783 | 20 | 0 | 193 | 0 | 21167 | logfile |
✔ | 6G4S | 4348 | 2022-12-22 | 2018-03-28 | 4.0 | 4.37 | — | 3.9 | 0.005 | 1.05 | 0.0 | 0.07 | 21.38 | 0.01 | 1.911 | 1.77 | 0.00 | 8.6 | 91.2 | 0.2 | -3.72 | 0.72 | 0.69 | — | 3.9 | 0.004 | 0.71 | 0.0 | 0.03 | 21.09 | 0.00 | 2.009 | 7.98 | 0.00 | 11.6 | 88.4 | 0.0 | -0.68 | 2.10 | 0.81 | 0.73 | — | 48967 | 5224 | 33 | 1613 | 768 | 0 | 0 | logfile |
✔ | 6PP6 | 20420 | 2022-12-16 | 2019-07-05 | 4.28 | 4.54 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.04 | 11.88 | 0.00 | 2.179 | 3.17 | 0.00 | 0.6 | 99.4 | 0.0 | -1.13 | 0.79 | 0.78 | — | 4.3 | 0.003 | 0.56 | 0.0 | 0.04 | 12.53 | 0.00 | 1.940 | 11.13 | 0.06 | 3.2 | 96.8 | 0.0 | -0.78 | 1.51 | 0.81 | 0.81 | — | 32106 | 2062 | 13 | 0 | 12 | 0 | 16126 | logfile |
✔ | 5VLZ | 8709 | 2022-12-17 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.66 | — | 4.4 | 0.003 | 0.81 | 0.0 | 0.00 | 5.63 | 0.00 | 2.281 | 1.18 | 0.00 | 6.0 | 94.0 | 0.0 | -1.57 | 1.65 | 0.83 | 0.78 | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XWQ | 10635 | 2022-12-12 | 2020-01-24 | 3.41 | 4.27 | — | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 13.42 | 0.00 | 2.171 | 10.53 | 0.00 | 3.5 | 96.2 | 0.2 | -2.80 | 0.73 | 0.80 | 0.22 | 4.0 | 0.003 | 0.78 | 0.0 | 0.04 | 15.52 | 0.00 | 2.168 | 13.94 | 0.20 | 4.0 | 96.0 | 0.0 | 1.04 | 1.17 | 0.72 | 0.84 | 0.66 | 9572 | 1281 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R94 | 4768 | 2022-12-14 | 2019-04-02 | 3.5 | 2.44 | — | 3.6 | 0.012 | 1.00 | 1.0 | 0.07 | 26.38 | 0.01 | 2.114 | 1.78 | 0.00 | 3.0 | 96.6 | 0.4 | 0.29 | 0.74 | 0.70 | 2.23 | 3.5 | 0.004 | 0.62 | 1.0 | 0.05 | 26.92 | 0.00 | 2.020 | 4.67 | 0.00 | 3.3 | 96.7 | 0.0 | 2.50 | 1.02 | 0.76 | 0.72 | 1.86 | 22367 | 803 | 10 | 290 | 0 | 0 | 9995 | logfile |
✘ | 6RKV | 4912 | 2022-12-18 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 12.80 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2022-12-11 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 17.15 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.87 | 0.0 | 0.04 | 21.10 | 0.01 | 1.792 | 36.17 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.34 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 6G4W | 4349 | 2022-12-21 | 2018-03-28 | 4.5 | 5.22 | — | 4.4 | 0.006 | 1.11 | 2.0 | 0.07 | 21.52 | 0.01 | 0.760 | 5.05 | 0.00 | 8.2 | 91.5 | 0.3 | -3.51 | 0.65 | 0.51 | — | 4.3 | 0.004 | 0.70 | 0.0 | 0.03 | 23.60 | 0.00 | 2.004 | 11.37 | 0.00 | 9.6 | 90.3 | 0.1 | -1.00 | 2.53 | 0.87 | 0.62 | — | 45223 | 4589 | 31 | 1563 | 768 | 0 | 0 | logfile |
✔ | 6E0G | 8947 | 2022-12-13 | 2018-07-06 | 2.9 | 2.97 | — | 3.0 | 0.010 | 1.03 | 0.0 | 0.06 | 10.04 | 0.01 | 2.030 | 9.42 | 0.00 | 6.7 | 92.6 | 0.6 | -3.72 | 0.62 | 0.71 | 2.41 | 3.0 | 0.004 | 0.72 | 0.0 | 0.05 | 14.07 | 0.00 | 2.176 | 16.85 | 2.32 | 6.7 | 93.3 | 0.0 | -0.64 | 2.43 | 0.62 | 0.73 | 2.79 | 12910 | 1650 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GYN | 0093 | 2022-12-13 | 2018-06-30 | 3.4 | 3.66 | 3.52 | 3.6 | 0.008 | 0.85 | 0.0 | 0.05 | 9.32 | 0.01 | 2.273 | 3.32 | 0.00 | 4.7 | 95.3 | 0.0 | -2.56 | 0.66 | 0.83 | 3.51 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 13.23 | 0.00 | 2.248 | 7.67 | 0.17 | 2.4 | 97.6 | 0.0 | 2.34 | 0.49 | 0.64 | 0.83 | 2.28 | 16932 | 1980 | 8 | 0 | 36 | 0 | 0 | logfile |
✔ | 6i3N | 4405 | 2022-12-12 | 2018-11-06 | 3.1 | 3.19 | 2.96 | 3.2 | 0.007 | 1.05 | 0.0 | 0.05 | 11.33 | 0.01 | 2.410 | 3.63 | 0.00 | 7.9 | 92.1 | 0.0 | -5.28 | 0.58 | 0.82 | 1.77 | 3.2 | 0.006 | 0.70 | 0.0 | 0.04 | 17.04 | 0.00 | 2.156 | 7.95 | 0.71 | 5.6 | 94.4 | 0.0 | 1.75 | 1.33 | 0.60 | 0.86 | 0.96 | 10660 | 1339 | 13 | 0 | 0 | 0 | 0 | logfile |