Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GNi	34165	2023-07-04	2022-08-24	3.74	3.26	3.54	3.5	0.007	1.04	0.0	0.06	14.15	0.01	1.977	10.24	0.00	5.7	94.3	0.0	-3.32	0.66	0.75	1.56	3.4	0.003	0.74	0.0	0.04	16.60	0.00	2.204	13.74	0.48	4.2	95.8	0.0	-0.53	0.68	0.66	0.75	1.55	5832	746	4	0	1	0	0	logfile
✔	6T8B	10399	2023-07-09	2019-10-24	3.65	3.73	—	3.7	0.004	0.72	0.0	0.05	12.10	0.01	1.942	14.10	0.00	7.2	92.8	0.0	-4.40	0.76	0.83	2.47	3.7	0.004	0.71	0.0	0.05	16.55	0.00	1.868	13.84	0.40	6.0	94.0	0.0	-1.41	0.71	0.79	0.84	1.76	19077	2370	14	40	10	0	0	logfile
✔	8FA2	28948	2023-07-03	2022-11-25	2.82	2.48	3.15	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.003	0.45	0.0	0.04	14.46	0.00	2.218	8.87	0.67	0.0	100.0	0.0	5.30	0.38	0.76	0.79	0.78	2577	342	6	0	0	0	0	logfile
✔	7WWV	32874	2023-07-10	2022-02-14	3.2	3.31	—	3.3	0.002	0.57	0.0	0.04	15.91	0.00	2.204	6.39	0.00	8.4	91.3	0.2	-0.65	0.74	0.80	2.46	3.3	0.002	0.57	0.0	0.04	17.78	0.00	2.064	7.43	0.33	8.8	90.9	0.2	-0.73	1.46	0.75	0.83	2.40	19622	2233	11	117	0	0	0	logfile
✔	7NSB	12563	2023-07-07	2021-03-05	3.7	3.60	3.62	3.7	0.004	0.70	0.0	0.05	13.75	0.00	2.214	8.33	0.00	11.5	88.5	0.0	-2.03	0.73	0.82	2.57	3.7	0.003	0.63	0.0	0.04	15.38	0.00	2.139	7.84	0.37	10.4	89.6	0.0	-1.04	0.31	0.73	0.82	1.63	13474	1775	4	0	0	0	0	logfile
✔	6PA7	20281	2023-07-10	2019-06-11	2.94	3.31	—	3.1	0.005	0.80	0.0	0.05	23.57	0.01	2.304	3.72	0.00	3.1	96.9	0.0	-2.99	0.80	0.77	2.57	3.1	0.003	0.65	0.0	0.04	25.89	0.00	2.170	12.57	2.87	3.6	96.4	0.0	0.76	0.85	0.82	0.83	2.55	21019	1770	19	332	3	0	0	logfile
✔	8EG0	28108	2023-07-04	2022-09-10	3.53	4.58	3.65	4.0	0.002	0.49	0.0	0.04	11.73	0.00	2.269	7.87	0.00	0.5	99.5	0.0	1.82	0.89	0.83	1.71	4.1	0.004	0.55	0.0	0.04	13.47	0.00	2.195	11.32	0.00	2.3	97.7	0.0	1.60	0.57	0.90	0.85	1.98	6031	584	4	65	0	0	0	logfile
✔	7Z2D	14462	2023-07-04	2022-02-26	3.38	3.18	3.47	3.3	0.006	0.65	0.0	0.04	16.33	0.02	2.187	7.33	0.00	3.9	96.1	0.0	-0.02	0.60	0.69	2.73	3.3	0.004	0.71	0.0	0.04	17.94	0.01	2.231	10.11	0.23	5.3	94.7	0.0	-0.40	0.38	0.60	0.73	2.54	8591	959	4	36	1	0	0	logfile
✔	7R6L	24281	2023-07-04	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	16.80	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.73	0.0	0.04	16.40	0.01	1.882	7.54	0.00	0.0	0.0	0.0	—	0.09	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✘	7XL4	33272	2023-07-11	2022-04-21	3.86	3.92	—	3.8	0.001	0.36	0.0	0.04	9.42	0.00	2.274	4.13	0.00	1.4	98.6	0.0	-4.82	0.78	0.75	1.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24560	3479	8	0	3	0	0	logfile
✔	7E3B	30978	2023-07-03	2021-02-08	4.2	4.05	—	4.0	0.006	0.81	0.0	0.05	13.28	0.00	2.241	16.63	0.00	8.2	91.8	0.0	-2.04	0.74	0.84	—	4.0	0.003	0.70	0.0	0.05	13.19	0.00	2.247	15.70	0.00	5.8	94.2	0.0	-1.19	0.41	0.74	0.83	—	3299	421	4	0	1	0	0	logfile
✔	7VXi	32180	2023-07-11	2021-11-12	3.4	2.35	—	2.0	0.002	0.49	0.0	0.04	7.29	0.00	2.125	3.01	0.00	4.3	95.5	0.1	-1.83	0.65	0.60	1.83	2.1	0.003	0.64	0.0	0.04	13.57	0.00	2.129	9.76	0.33	3.3	96.5	0.2	0.10	1.42	0.71	0.69	2.31	24570	3144	3	0	0	0	0	logfile
✔	6PLZ	20381	2023-07-07	2019-07-01	3.0	3.68	—	3.5	0.006	0.97	0.0	0.06	8.93	0.01	2.338	4.40	0.00	5.3	94.7	0.0	-5.25	0.60	0.85	4.29	3.5	0.003	0.67	0.0	0.04	15.36	0.00	2.102	9.19	2.85	3.1	96.9	0.0	-0.67	0.70	0.56	0.84	3.32	14210	1725	15	0	20	0	0	logfile
✔	5V7Q	8641	2023-07-16	2017-03-20	3.7	3.74	—	3.7	0.007	0.90	0.0	0.05	11.17	0.01	2.022	3.00	0.00	10.2	89.2	0.6	-2.24	0.78	0.76	1.68	3.7	0.007	0.79	0.0	0.04	15.03	0.01	1.963	17.22	1.35	11.9	88.0	0.1	-2.33	1.59	0.81	0.81	1.32	94306	3216	32	3233	1	0	0	logfile
✘	8GNJ	34166	2023-07-04	2022-08-24	3.78	3.60	3.67	3.6	0.012	1.34	0.0	0.07	15.38	0.01	1.811	12.03	0.00	4.6	95.4	0.0	-3.73	0.66	0.81	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5832	746	4	0	1	0	0	logfile
✔	7R15	14231	2023-07-11	2022-02-02	4.1	4.52	4.27	4.3	0.004	0.57	0.0	0.05	13.87	0.00	2.099	11.10	0.00	6.2	93.8	0.0	-0.90	0.86	0.84	—	4.3	0.003	0.57	0.0	0.04	14.11	0.00	2.136	11.06	0.04	5.1	94.9	0.0	-0.86	0.36	0.85	0.83	—	24100	3000	9	0	43	0	0	logfile
✔	7WB1	32392	2023-07-06	2021-12-15	3.7	3.09	—	3.0	0.003	0.59	0.0	0.04	19.51	0.00	2.046	11.12	0.00	4.7	95.2	0.1	0.55	0.83	0.75	0.94	3.0	0.003	0.61	0.0	0.04	20.37	0.00	2.084	14.67	0.00	5.2	94.8	0.0	0.33	1.01	0.83	0.76	1.29	11524	960	4	178	0	0	0	logfile
✔	6RLB	4918	2023-07-10	2019-05-01	4.5	4.85	4.49	4.3	0.007	0.95	0.0	0.06	4.70	0.00	2.082	0.71	0.00	4.0	95.9	0.0	-1.08	0.80	0.63	—	4.3	0.003	0.72	0.0	0.04	5.23	0.00	2.224	3.54	0.00	11.8	88.1	0.0	-0.71	1.83	0.86	0.66	—	20407	4122	14	0	0	0	0	logfile
✔	6T7A	10391	2023-07-05	2019-10-21	3.7	4.20	3.60	3.7	0.006	0.87	0.0	0.05	25.96	0.01	0.733	6.61	0.00	1.8	98.1	0.1	-3.03	0.85	0.81	1.66	3.7	0.005	0.76	0.0	0.04	26.57	0.00	2.152	16.37	1.40	2.5	97.5	0.0	2.32	1.74	0.87	0.85	1.25	10338	847	11	190	0	0	0	logfile
✔	7RAN	24378	2023-07-04	2021-07-02	3.45	3.40	—	3.5	0.005	0.70	0.0	0.05	12.51	0.00	2.091	5.14	0.00	3.0	97.0	0.0	0.61	0.75	0.81	2.69	3.5	0.003	0.56	0.0	0.04	14.79	0.00	2.095	4.96	0.11	2.8	97.2	0.0	0.67	0.36	0.76	0.84	2.18	8523	1120	6	0	1	0	0	logfile

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