Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VYK	21462	2022-05-13	2020-02-27	3.2	3.31	—	3.3	0.010	1.74	0.0	0.07	15.66	0.00	2.122	3.09	0.00	4.5	95.5	0.0	-3.22	0.72	0.81	3.40	3.3	0.005	1.21	0.0	0.04	15.57	0.00	2.142	8.46	0.20	3.1	96.9	0.0	-0.32	2.52	0.72	0.86	3.49	14623	1869	12	0	7	0	0	logfile
✔	6WL9	21818	2022-05-15	2020-04-18	4.2	4.68	—	4.4	0.006	0.53	0.0	0.04	13.18	0.00	2.052	24.33	0.00	1.9	98.1	0.0	1.21	0.74	0.87	—	4.4	0.004	0.88	0.0	0.05	13.49	0.00	2.197	19.25	0.09	0.2	99.8	0.0	2.25	1.51	0.73	0.86	—	23400	3016	104	0	0	0	0	logfile
✔	6XJB	22205	2022-05-13	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.15	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.005	0.69	0.0	0.04	15.37	0.00	2.075	14.28	0.46	8.2	91.8	0.0	-1.64	1.83	0.88	0.86	2.01	10070	1277	1	0	0	0	0	logfile
✔	6XMG	22258	2022-05-12	2020-06-30	4.8	8.26	—	3.9	0.002	0.53	0.0	0.03	16.06	0.00	2.187	10.84	0.00	6.7	93.3	0.0	-2.01	0.90	0.74	—	3.5	0.004	0.76	0.0	0.04	18.71	0.01	1.998	43.36	0.20	10.7	89.3	0.0	-2.06	0.75	0.90	0.78	—	8361	638	4	154	1	0	0	logfile
✔	6PLY	20380	2022-05-13	2019-07-01	2.9	3.56	—	3.4	0.007	1.00	0.0	0.06	10.18	0.01	2.330	5.27	0.00	5.1	94.9	0.0	-5.21	0.51	0.79	3.82	3.4	0.004	0.76	0.0	0.05	16.03	0.01	2.185	9.82	2.88	4.6	95.2	0.2	-1.93	1.34	0.53	0.81	3.29	14165	1730	14	0	20	0	0	logfile
✔	7JV5	22493	2022-05-12	2020-08-20	3.0	3.90	—	3.9	0.005	1.09	0.0	0.07	9.28	0.01	2.240	4.84	0.00	3.7	96.3	0.0	-3.02	0.54	0.74	2.06	3.9	0.003	0.64	0.0	0.04	14.19	0.00	2.130	8.62	1.67	2.6	97.4	0.0	0.53	0.78	0.45	0.67	2.04	8531	1044	6	0	13	0	0	logfile
✔	7BSP	30163	2022-05-13	2020-03-31	4.0	4.12	—	4.0	0.005	0.66	0.0	0.04	14.29	0.01	1.928	53.98	0.00	14.6	85.4	0.0	-7.27	0.68	0.87	—	4.0	0.003	0.75	0.0	0.04	16.45	0.00	2.163	13.25	0.42	7.5	92.5	0.0	-2.51	0.63	0.68	0.86	—	11010	1352	5	0	5	0	0	logfile
✘	7AHQ	11790	2022-05-13	2020-09-25	3.6	4.20	3.44	3.7	0.011	1.08	0.0	0.07	14.40	0.01	1.179	8.04	0.00	2.5	97.5	0.0	-2.65	0.77	0.82	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15055	1855	10	0	20	0	0	logfile
✔	7DTV	30855	2022-05-13	2021-01-06	3.5	3.53	—	3.5	0.008	0.91	0.0	0.07	14.78	0.01	2.189	5.29	0.00	9.8	90.1	0.1	-4.67	0.75	0.83	2.62	3.5	0.004	0.58	0.0	0.04	15.73	0.00	2.184	5.77	0.53	7.3	92.7	0.0	-1.05	0.43	0.74	0.80	2.37	11276	1560	8	0	22	0	0	logfile
✔	7LJD	23391	2022-05-12	2021-01-28	3.2	3.31	—	3.3	0.004	0.85	0.0	0.06	8.49	0.01	2.294	3.93	0.00	2.2	97.8	0.0	-2.10	0.57	0.72	2.46	3.3	0.003	0.58	0.0	0.04	13.71	0.00	2.179	6.97	0.11	2.7	97.3	0.0	0.54	0.73	0.64	0.79	1.82	8518	1046	6	0	11	0	0	logfile
✔	6PLo	20370	2022-05-13	2019-07-01	3.3	3.50	—	3.5	0.007	1.04	0.0	0.06	9.62	0.01	2.321	6.18	0.00	4.6	95.4	0.0	-5.29	0.68	0.83	3.92	3.5	0.007	0.79	0.0	0.04	14.11	0.01	2.181	10.35	0.72	6.2	93.8	0.0	-1.43	0.74	0.67	0.85	3.67	14165	1730	15	0	20	0	0	logfile
✔	7BNN	12230	2022-05-15	2021-01-22	3.5	3.77	3.58	3.6	0.003	0.56	0.0	0.05	13.84	0.00	2.129	7.87	0.00	6.9	93.1	0.0	-2.44	0.84	0.85	2.33	3.6	0.003	0.59	0.0	0.04	15.36	0.00	2.186	8.30	0.18	6.8	93.2	0.0	-1.76	0.36	0.84	0.85	2.03	25775	3207	14	0	50	0	0	logfile
✔	6PLP	20371	2022-05-13	2019-07-01	3.3	3.51	—	3.8	0.001	0.46	0.0	0.04	7.10	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.44	0.72	3.32	3.6	0.003	0.61	0.0	0.04	13.45	0.01	2.131	10.00	0.52	2.9	97.1	0.0	-0.71	1.19	0.45	0.75	2.86	14240	1730	15	0	20	0	0	logfile
✔	6Z5R	11080	2022-05-15	2020-05-27	2.8	3.01	—	2.8	0.019	1.73	0.0	0.23	20.11	0.02	1.982	10.78	0.00	3.6	96.4	0.0	0.18	0.89	0.88	3.96	2.8	0.005	0.75	0.0	0.04	19.90	0.00	1.950	10.17	1.38	3.5	96.5	0.0	2.33	0.44	0.91	0.91	3.44	25048	2336	72	0	105	3	0	logfile
✔	6Y59	10691	2022-05-16	2020-02-25	3.2	4.61	3.12	3.4	0.008	0.94	0.0	0.05	12.32	0.01	2.376	3.45	0.00	1.2	98.8	0.0	-3.39	0.92	0.84	2.09	3.4	0.002	0.53	0.0	0.04	13.47	0.00	2.158	9.24	0.06	2.1	97.9	0.0	0.53	1.18	0.93	0.86	2.30	31910	1915	5	0	0	0	16045	logfile
✔	7ABH	11696	2022-05-14	2020-09-07	4.5	4.60	—	4.4	0.003	0.63	0.0	0.05	9.27	0.00	1.529	2.09	0.00	6.0	93.7	0.2	-2.78	0.75	0.77	—	4.4	0.002	0.63	0.0	0.04	9.50	0.00	2.174	3.05	0.00	6.2	93.8	0.0	-0.31	1.29	0.77	0.80	—	17922	3288	16	65	0	0	0	logfile
✔	6ZD0	11172	2022-05-12	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.3	0.003	0.74	0.0	0.04	5.33	0.00	2.199	10.22	0.00	19.5	80.1	0.4	-4.32	2.53	0.59	0.57	—	7962	1611	6	0	0	0	0	logfile
✔	6YBQ	10771	2022-05-16	2020-03-17	1.96	2.06	—	2.0	0.039	1.58	0.0	0.05	15.05	0.01	1.550	4.72	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	2.0	0.003	0.72	0.0	0.05	15.91	0.00	2.108	4.76	0.41	2.4	97.6	0.0	0.00	0.46	0.84	0.89	6.08	34092	4289	36	0	12	871	0	logfile
✔	6X15	21989	2022-05-13	2020-05-18	3.05	3.20	—	3.2	0.009	1.26	0.0	0.05	19.04	0.01	2.281	3.63	0.00	3.1	96.9	0.0	-3.80	0.73	0.87	2.90	3.2	0.002	0.52	0.0	0.04	15.47	0.00	2.196	6.17	0.00	2.9	97.1	0.0	1.69	0.44	0.73	0.88	2.53	10026	1260	9	0	51	9	0	logfile
✘	6X17	21991	2022-05-13	2020-05-18	3.66	3.75	—	3.7	0.007	1.05	0.0	0.05	15.45	0.01	2.284	4.19	0.00	3.4	96.6	0.0	-3.74	0.64	0.85	2.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9390	1245	9	0	3	3	0	logfile

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