Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7C2K	30275	2022-07-03	2020-05-07	2.93	3.24	3.00	3.1	0.007	0.67	0.0	0.04	13.79	0.00	2.256	7.24	0.00	4.5	95.5	0.0	-2.91	0.78	0.89	4.22	3.1	0.003	0.54	0.0	0.04	15.52	0.00	2.211	6.14	1.63	4.4	95.6	0.0	-0.51	0.93	0.75	0.89	3.78	10692	1256	7	31	3	0	0	logfile
✔	6UY0	20945	2022-07-03	2019-11-09	3.23	3.39	—	3.4	0.014	1.85	0.0	0.08	13.82	0.00	1.861	1.28	0.00	4.3	95.7	0.0	-2.56	0.47	0.67	1.98	3.4	0.003	0.54	0.0	0.04	15.79	0.00	2.022	5.26	0.28	2.2	97.8	0.0	1.71	1.14	0.64	0.83	1.38	9684	1210	1	0	7	0	0	logfile
✔	7JPQ	22419	2022-07-04	2020-08-09	3.5	3.56	—	3.5	0.008	1.14	0.0	0.06	14.27	0.01	2.088	2.20	0.00	3.0	97.0	0.0	-2.05	0.71	0.81	2.78	3.5	0.006	0.78	0.0	0.04	16.01	0.00	1.999	4.64	0.13	2.5	97.5	0.0	0.62	0.55	0.73	0.82	1.78	13863	1691	6	0	4	0	0	logfile
✔	7JPS	22421	2022-07-04	2020-08-09	4.4	5.22	—	3.8	0.006	1.19	1.0	0.06	16.52	0.01	2.102	4.40	0.00	3.1	96.9	0.0	-2.45	0.67	0.46	—	3.8	0.004	0.72	0.0	0.04	16.33	0.00	1.876	20.20	0.00	5.4	94.6	0.0	-0.52	1.56	0.84	0.72	—	16352	1932	11	26	7	0	0	logfile
✔	7JPR	22420	2022-07-04	2020-08-09	4.0	4.90	—	3.3	0.006	1.20	0.0	0.06	15.00	0.01	2.048	5.61	0.00	3.6	96.4	0.0	-2.74	0.82	0.68	—	3.6	0.003	0.72	0.0	0.04	16.55	0.00	1.924	17.21	0.21	3.2	96.8	0.0	0.50	0.91	0.86	0.76	—	16737	2045	8	0	6	0	0	logfile
✔	7K45	22660	2022-07-02	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.41	0.0	0.08	9.47	0.01	2.568	0.35	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	3.9	0.020	1.45	1.0	0.06	14.84	0.01	2.277	8.49	0.00	3.2	96.8	0.0	0.06	1.30	0.80	0.80	2.81	3038	419	4	0	2	0	0	logfile
✔	6RJU	4906	2022-07-02	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	6Y97	10733	2022-07-03	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.28	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.004	0.76	0.0	0.04	13.35	0.00	2.096	18.78	0.00	6.8	93.2	0.0	0.33	1.52	0.72	0.72	—	4366	564	4	0	0	0	0	logfile
✘	6KPH	0746	2022-07-03	2019-08-15	2.41	3.45	—	3.2	0.014	1.01	0.0	0.15	13.14	0.00	1.260	8.27	0.00	8.5	91.5	0.0	-4.25	0.81	0.85	4.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62832	3936	24	0	48	0	31212	logfile
✔	7JPP	22418	2022-07-04	2020-08-09	3.7	3.83	—	3.8	0.007	1.18	0.0	0.06	15.25	0.01	2.061	3.35	0.00	1.6	98.4	0.0	-1.90	0.72	0.78	2.10	3.8	0.008	0.86	0.0	0.04	16.95	0.01	1.948	7.38	0.24	2.8	97.2	0.0	0.65	2.23	0.74	0.80	1.43	14872	1816	7	0	4	0	0	logfile
✔	6RoW	4975	2022-07-07	2019-05-13	4.5	4.52	4.16	4.2	0.016	1.50	0.0	0.07	14.46	0.01	1.848	49.70	0.00	30.3	68.7	1.0	-6.95	0.81	0.74	—	4.2	0.003	0.67	0.0	0.04	13.72	0.00	1.972	11.97	0.00	13.1	86.7	0.1	-2.58	1.49	0.81	0.73	—	43049	3129	7	0	0	0	20156	logfile
✘	6VKT	21229	2022-07-05	2020-01-22	2.72	3.21	—	3.1	0.006	0.79	0.0	0.04	13.64	0.01	1.220	19.82	0.00	2.6	97.4	0.0	-1.19	0.73	0.83	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24331	3122	6	0	24	0	0	logfile
✔	6ZVH	11456	2022-07-05	2020-07-24	2.9	3.10	2.84	2.8	0.008	0.95	1.0	0.05	15.50	0.01	1.992	5.03	0.00	4.9	94.9	0.2	-2.07	0.54	0.88	3.23	2.8	0.006	0.72	0.0	0.04	16.24	0.01	1.852	9.01	2.15	8.5	91.4	0.2	-0.92	1.10	0.54	0.89	2.84	79014	5074	43	1815	33	0	0	logfile
✔	6KPi	0747	2022-07-03	2019-08-15	2.43	3.50	—	3.0	0.008	0.67	0.0	0.06	11.99	0.00	1.974	5.19	0.00	7.1	92.9	0.0	-4.39	0.85	0.88	4.58	3.0	0.005	0.78	2.0	0.13	14.39	0.00	1.984	5.77	0.62	3.5	96.5	0.0	1.23	0.72	0.85	0.90	4.27	62209	3936	24	0	24	0	31225	logfile
✔	6So5	10266	2022-07-03	2019-08-29	4.2	4.36	—	4.2	0.005	0.82	0.0	0.04	14.99	0.01	1.973	23.72	0.00	10.2	89.8	0.0	-4.60	0.68	0.79	—	4.2	0.004	0.83	0.0	0.05	14.25	0.01	2.180	16.81	0.00	5.8	94.2	0.0	-0.33	1.26	0.66	0.78	—	8737	1097	7	0	1	0	0	logfile
✔	6WU0	21901	2022-07-03	2020-05-04	3.59	3.92	—	3.9	0.003	0.65	0.0	0.04	13.43	0.00	2.211	10.57	0.00	6.0	94.0	0.0	-1.89	0.56	0.63	0.78	3.9	0.015	1.49	1.0	0.04	16.06	0.01	2.103	16.12	1.07	7.4	92.6	0.0	-0.20	0.51	0.54	0.64	0.48	6340	854	1	0	0	0	0	logfile
✔	6VTT	21383	2022-07-04	2020-02-13	3.7	4.22	3.79	4.0	0.004	0.64	3.0	0.05	10.83	0.01	2.214	6.27	0.00	4.6	95.4	0.0	-4.61	0.82	0.82	2.05	4.0	0.005	0.65	0.0	0.05	13.53	0.00	2.182	10.19	0.35	7.8	92.2	0.0	-2.19	0.49	0.83	0.83	1.83	16607	1928	36	0	103	0	0	logfile
✘	6VL6	21231	2022-07-05	2020-01-22	4.6	5.00	4.54	4.6	0.019	1.46	0.0	0.09	11.38	0.01	2.431	0.59	0.00	0.9	99.1	0.0	0.45	0.87	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21504	2640	24	0	0	0	0	logfile
✔	7JW0	22512	2022-07-05	2020-08-24	4.3	4.63	4.41	4.4	0.010	1.51	6.0	0.09	8.08	0.01	2.527	0.43	0.00	2.3	97.5	0.1	1.05	0.81	0.71	—	4.4	0.005	0.69	0.0	0.05	9.81	0.00	2.135	6.58	0.00	4.4	95.6	0.0	0.02	1.28	0.85	0.80	—	26251	4314	27	0	69	0	0	logfile
✔	6PLX	20379	2022-07-04	2019-07-01	2.9	3.61	—	3.5	0.010	1.11	0.0	0.06	10.08	0.01	2.316	6.21	0.00	3.2	96.8	0.0	-5.10	0.56	0.83	4.25	3.5	0.003	0.67	0.0	0.04	15.26	0.00	2.151	8.74	2.71	3.1	96.9	0.0	-1.29	0.68	0.52	0.80	3.42	14240	1730	15	0	20	0	0	logfile

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