Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6KPA	0742	2022-07-03	2019-08-15	2.75	3.85	—	3.3	0.015	0.92	0.0	0.06	13.60	0.00	1.260	6.66	0.00	6.7	93.3	0.0	-4.52	0.87	0.88	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62845	3936	24	0	48	0	31225	logfile
✘	6VXK	21442	2022-07-04	2020-02-22	3.1	3.57	—	3.2	0.011	0.83	0.0	0.05	14.64	0.00	2.122	15.48	8.05	10.5	89.5	0.0	-3.69	0.86	0.88	3.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17418	2254	8	0	18	0	0	logfile
✘	7A6F	11672	2022-07-03	2020-08-25	3.5	3.35	—	3.5	0.008	1.03	0.0	0.06	17.19	0.01	1.295	33.11	1.50	7.8	92.2	0.0	-4.13	0.60	0.73	1.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12655	1596	4	0	10	0	0	logfile
✘	6YXR	10995	2022-07-03	2020-05-03	3.4	3.53	3.43	3.5	0.019	2.23	2.0	0.13	19.52	0.02	1.197	27.04	0.44	4.1	95.7	0.3	-3.53	0.67	0.76	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31910	2783	20	0	194	0	0	logfile
✘	6VY2	21456	2022-07-05	2020-02-25	4.86	6.05	—	5.2	0.006	0.91	0.0	0.07	14.28	0.00	2.056	18.44	4.96	5.7	93.8	0.5	-2.41	0.82	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21426	2442	66	0	180	0	0	logfile
✘	7BVE	30217	2022-07-06	2020-04-10	2.81	3.29	2.89	3.2	0.010	1.15	5.0	0.07	9.62	0.01	1.182	5.42	0.28	7.5	92.3	0.2	-4.01	0.64	0.82	4.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17146	2236	8	0	8	0	0	logfile
✘	7K4E	22666	2022-07-04	2020-09-15	4.34	5.29	—	4.9	0.005	1.04	0.0	0.06	10.89	0.01	1.304	5.91	0.56	8.2	91.8	0.0	-4.96	0.63	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20119	2480	8	0	5	0	0	logfile
✘	6WRG	21883	2022-07-06	2020-04-29	3.58	3.96	—	3.9	0.009	0.96	0.0	0.05	17.28	0.01	1.173	50.61	0.24	9.1	90.1	0.8	-3.02	0.80	0.84	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32527	3850	12	102	8	0	0	logfile
✘	6YMX	10847	2022-07-08	2020-04-10	3.17	3.73	3.27	3.6	0.010	1.11	0.0	0.06	15.99	0.01	1.201	7.02	0.39	6.1	93.9	0.1	-5.84	0.76	0.85	2.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	47034	5759	47	0	38	0	0	logfile
✘	7JJi	22352	2022-07-05	2020-07-26	3.6	4.10	3.68	4.0	0.020	1.75	0.0	0.13	9.94	0.01	1.183	1.15	0.21	1.6	98.4	0.0	0.52	0.84	0.85	3.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27459	3327	51	0	99	0	0	logfile
✘	6VFi	21173	2022-07-03	2020-01-05	4.54	4.63	4.96	4.5	0.018	1.47	0.0	0.09	10.93	0.01	2.449	0.53	0.00	1.3	98.7	0.0	1.21	0.80	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58488	7560	48	0	0	0	0	logfile
✘	6L3V	0827	2022-07-04	2019-10-15	2.63	2.90	2.72	2.9	0.005	0.71	0.0	0.03	14.94	0.01	1.386	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19416	1206	12	0	6	0	9528	logfile
✘	6SZV	10355	2022-07-04	2019-10-02	2.5	2.59	2.51	2.6	0.003	0.62	0.0	0.04	13.01	0.01	1.179	3.79	3.65	4.6	95.3	0.1	-2.79	0.68	0.85	4.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14847	1694	15	41	7	217	0	logfile
✘	6T0V	10360	2022-07-04	2019-10-03	3.02	3.10	3.02	3.1	0.006	0.77	0.0	0.05	15.69	0.01	1.182	6.75	7.38	4.9	95.1	0.0	-3.31	0.66	0.83	3.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18604	2190	8	43	8	0	0	logfile
✘	6L53	0836	2022-07-04	2019-10-22	3.63	3.79	—	3.7	0.002	0.67	0.0	0.04	9.71	0.00	2.193	8.74	3.49	9.8	89.9	0.3	-4.90	0.77	0.70	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13991	1935	1	0	0	0	0	logfile
✘	6XEZ	22160	2022-07-05	2020-06-14	3.5	4.13	—	4.0	0.010	0.92	0.0	0.05	17.15	0.01	1.146	20.16	10.77	13.0	86.9	0.1	-4.50	0.83	0.84	1.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21742	2563	11	70	19	0	0	logfile
✘	6Uo8	20822	2022-07-03	2019-10-14	3.63	3.97	—	3.8	0.004	0.73	0.0	0.05	13.39	0.01	1.484	4.07	0.00	7.8	92.2	0.0	-3.75	0.76	0.83	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10958	1385	7	0	15	0	0	logfile
✘	6VKT	21229	2022-07-05	2020-01-22	2.72	3.21	—	3.1	0.006	0.79	0.0	0.04	13.64	0.01	1.220	19.82	0.00	2.6	97.4	0.0	-1.19	0.73	0.83	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24331	3122	6	0	24	0	0	logfile
✘	7BVC	30216	2022-07-04	2020-04-10	2.9	3.37	2.95	3.3	0.006	0.88	2.0	0.05	13.55	0.01	1.184	6.01	0.17	8.2	91.6	0.1	-4.30	0.68	0.85	3.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17206	2231	5	0	8	0	0	logfile
✘	7JM7	22389	2022-07-06	2020-07-31	2.82	3.04	—	3.0	0.004	0.76	0.0	0.12	12.76	0.01	1.180	5.59	1.17	2.1	97.9	0.0	1.63	0.53	0.76	2.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28596	1802	16	0	38	36	14054	logfile

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