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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6WR4 | 21876 | 2022-12-18 | 2020-04-29 | 2.9 | 3.02 | — | 3.0 | 0.012 | 1.40 | 3.0 | 0.07 | 14.49 | 0.01 | 2.272 | 4.03 | 5.53 | 5.2 | 94.4 | 0.4 | -6.12 | 0.65 | 0.71 | 3.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11934 | 1410 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 6L4U | 0835 | 2022-12-19 | 2019-10-21 | 2.4 | 2.57 | — | 2.4 | 0.030 | 2.86 | 13.0 | 0.18 | 22.45 | 0.02 | 1.211 | 7.56 | 1.65 | 6.1 | 93.6 | 0.2 | -4.47 | 0.79 | 0.85 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62199 | 5075 | 72 | 0 | 557 | 156 | 0 | logfile |
✘ | 6VXM | 21444 | 2022-12-18 | 2020-02-22 | 3.06 | 3.76 | — | 3.4 | 0.018 | 1.02 | 0.0 | 0.05 | 12.84 | 0.00 | 2.208 | 5.67 | 0.00 | 3.9 | 96.1 | 0.0 | -2.02 | 0.75 | 0.81 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15064 | 1939 | 14 | 0 | 21 | 0 | 0 | logfile |
✘ | 6WBX | 21600 | 2022-12-18 | 2020-03-27 | 3.5 | 3.82 | 3.55 | 3.7 | 0.012 | 1.07 | 0.0 | 0.06 | 13.49 | 0.01 | 2.190 | 4.07 | 0.11 | 7.9 | 92.0 | 0.1 | -5.51 | 0.77 | 0.87 | 3.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9170 | 1264 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 6LHU | 0899 | 2022-12-18 | 2019-12-10 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23169 | 1518 | 2 | 0 | 0 | 0 | 11483 | logfile |
✘ | 6LHS | 0896 | 2022-12-18 | 2019-12-10 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22737 | 1456 | 2 | 0 | 0 | 0 | 11313 | logfile |
✘ | 6PW6 | 20500 | 2022-12-18 | 2019-07-22 | 4.5 | 4.56 | 4.36 | 4.5 | 0.021 | 1.78 | 0.0 | 0.11 | 10.80 | 0.01 | 2.200 | 1.86 | 0.56 | 2.7 | 97.2 | 0.2 | 0.50 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15942 | 1842 | 45 | 0 | 108 | 0 | 0 | logfile |
✘ | 6ZHD | 11218 | 2022-12-18 | 2020-06-22 | 3.7 | 4.31 | — | 3.8 | 0.008 | 1.45 | 10.0 | 0.10 | 12.70 | 0.01 | 1.973 | 5.32 | 0.74 | 3.6 | 96.3 | 0.0 | -0.92 | 0.89 | 0.88 | 2.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26927 | 3353 | 29 | 0 | 66 | 0 | 0 | logfile |
✘ | 6VFi | 21173 | 2022-12-19 | 2020-01-05 | 4.54 | 4.63 | 4.54 | 4.5 | 0.018 | 1.47 | 0.0 | 0.09 | 10.93 | 0.01 | 2.449 | 0.53 | 0.00 | 1.3 | 98.7 | 0.0 | 1.21 | 0.74 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60925 | 7875 | 50 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VWK | 21419 | 2022-12-18 | 2020-02-20 | 3.3 | 3.56 | — | 3.5 | 0.010 | 1.30 | 4.0 | 0.07 | 12.71 | 0.01 | 2.355 | 0.98 | 0.59 | 0.9 | 99.1 | 0.0 | -0.35 | 0.65 | 0.83 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8423 | 1133 | 13 | 0 | 0 | 0 | 0 | logfile |
✘ | 5YWP | 6855 | 2022-12-18 | 2017-11-29 | 4.6 | 5.26 | — | 20.0 | 0.005 | 0.98 | 0.0 | 0.05 | 9.48 | 0.01 | 2.023 | 48.83 | 0.00 | 7.3 | 92.1 | 0.6 | -3.63 | 0.12 | 0.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19561 | 2588 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VL6 | 21231 | 2022-12-18 | 2020-01-22 | 4.6 | 5.00 | 4.54 | 4.6 | 0.019 | 1.46 | 0.0 | 0.09 | 11.38 | 0.01 | 2.431 | 0.59 | 0.00 | 0.9 | 99.1 | 0.0 | 0.45 | 0.87 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21504 | 2640 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6U8E | 20687 | 2022-12-18 | 2019-09-04 | 3.03 | 3.66 | 2.89 | 3.5 | 0.014 | 1.25 | 0.0 | 0.06 | 12.08 | 0.01 | 2.274 | 5.65 | 2.02 | 4.9 | 95.1 | 0.0 | -3.92 | 0.61 | 0.82 | 3.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22984 | 3000 | 16 | 0 | 16 | 0 | 0 | logfile |
✘ | 6SM3 | 10241 | 2022-12-21 | 2019-08-21 | 3.3 | 3.34 | — | 3.3 | 0.009 | 0.95 | 0.0 | 0.06 | 13.87 | 0.01 | 1.169 | 2.56 | 0.26 | 7.6 | 92.4 | 0.0 | -3.64 | 0.76 | 0.86 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22040 | 2796 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6Voi | 21265 | 2022-12-18 | 2020-01-30 | 4.03 | 3.85 | — | 3.9 | 0.005 | 0.95 | 0.0 | 0.05 | 15.12 | 0.01 | 2.142 | 13.51 | 0.24 | 7.7 | 92.0 | 0.3 | -3.86 | 0.73 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27497 | 3575 | 14 | 0 | 5 | 0 | 0 | logfile |
✘ | 6UZV | 20963 | 2022-12-19 | 2019-11-15 | 3.1 | 3.13 | — | 3.2 | 0.010 | 1.18 | 0.0 | 0.06 | 20.36 | 0.04 | 1.217 | 11.55 | 0.89 | 4.2 | 95.8 | 0.0 | -1.85 | 0.71 | 0.84 | 3.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72606 | 6711 | 60 | 0 | 408 | 0 | 0 | logfile |
✘ | 6VCC | 21148 | 2022-12-18 | 2019-12-20 | 3.6 | 3.10 | 3.54 | 3.5 | 0.004 | 0.66 | 0.0 | 0.05 | 12.50 | 0.01 | 2.253 | 4.58 | 0.00 | 3.6 | 96.4 | 0.0 | -4.54 | 0.53 | 0.68 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7572 | 936 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6SML | 10243 | 2022-12-21 | 2019-08-22 | 3.4 | 3.43 | — | 3.4 | 0.009 | 1.00 | 0.0 | 0.06 | 14.43 | 0.01 | 1.173 | 3.67 | 0.09 | 6.7 | 93.3 | 0.1 | -3.42 | 0.74 | 0.83 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22152 | 2810 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6YXR | 10995 | 2022-12-19 | 2020-05-03 | 3.4 | 3.53 | 3.43 | 3.5 | 0.019 | 2.32 | 2.0 | 0.14 | 19.66 | 0.02 | 1.197 | 27.04 | 0.44 | 4.1 | 95.7 | 0.3 | -3.53 | 0.67 | 0.76 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31910 | 2783 | 20 | 0 | 194 | 0 | 0 | logfile |
✘ | 6ZP7 | 11337 | 2022-12-18 | 2020-07-08 | 3.3 | 4.01 | 3.43 | 3.7 | 0.012 | 0.83 | 0.0 | 0.16 | 13.52 | 0.01 | 0.008 | 16.14 | 0.52 | 3.0 | 97.0 | 0.0 | -0.92 | 0.64 | 0.59 | 1.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |