Table showing results for November 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6QEL	4537	2021-11-02	2019-01-08	3.9	4.04	—	4.0	0.011	1.02	0.0	0.05	11.57	0.01	1.292	4.62	0.46	11.6	88.4	0.0	-4.53	0.79	0.76	1.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64816	4092	24	0	24	0	32302	logfile
✘	5WEo	8823	2021-11-04	2017-07-10	4.2	4.35	—	4.2	0.015	1.06	0.0	0.08	9.87	0.01	2.188	8.90	0.24	7.3	92.7	0.1	-3.69	0.80	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31168	3954	8	0	4	0	0	logfile
✘	7NKZ	12451	2021-11-01	2021-02-19	2.5	2.68	2.48	2.6	0.003	0.65	1.0	0.04	12.91	0.00	1.162	11.51	0.63	1.1	98.9	0.0	0.48	0.70	0.88	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6424	792	4	0	5	42	0	logfile
✘	7BKD	12210	2021-11-03	2021-01-15	3.0	2.42	—	2.5	0.006	0.82	6.0	0.06	14.41	0.01	2.118	9.40	1.26	5.5	94.5	0.1	-0.29	0.60	0.80	3.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24799	3177	18	0	26	0	0	logfile
✘	7K9H	22748	2021-11-04	2020-09-29	3.2	3.81	3.34	3.7	0.006	0.73	1.0	0.06	17.63	0.00	2.085	10.17	0.18	4.3	95.7	0.0	-0.62	0.79	0.83	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27022	3391	51	0	105	0	0	logfile
✘	7BKB	12206	2021-11-02	2021-01-15	3.5	3.73	—	3.7	0.010	1.09	48.0	0.10	15.44	0.01	1.171	10.82	3.80	7.7	92.1	0.2	-1.67	0.53	0.64	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64126	8220	44	0	68	0	0	logfile
✘	7RLi	24531	2021-11-03	2021-07-23	3.1	3.39	—	2.6	0.004	0.86	0.0	0.05	16.28	0.01	1.481	17.49	0.00	5.3	94.4	0.3	-1.57	0.88	0.82	1.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69768	8820	24	0	24	0	0	logfile
✘	7BKC	12209	2021-11-02	2021-01-15	3.0	2.63	—	2.7	0.010	1.07	47.0	0.10	15.28	0.01	1.171	10.38	3.41	7.8	92.1	0.1	-1.69	0.62	0.80	3.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64126	8220	48	0	68	0	0	logfile
✘	7o3E	12705	2021-11-05	2021-04-01	3.6	3.24	—	3.4	0.007	1.05	1.0	0.15	14.91	0.01	1.201	4.95	0.00	4.7	95.3	0.0	-1.64	0.88	0.84	2.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44039	5417	45	0	34	0	0	logfile
✘	7o37	12702	2021-11-06	2021-04-01	3.2	3.13	—	3.1	0.007	1.03	0.0	0.16	14.85	0.01	1.201	5.27	0.04	3.7	96.3	0.0	-1.41	0.90	0.87	2.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48610	5970	52	0	43	0	0	logfile
✘	7V87	31792	2021-11-01	2021-08-22	3.3	3.93	—	3.6	0.003	0.59	0.0	0.04	14.38	0.00	2.167	6.50	0.00	5.4	94.6	0.0	-0.21	0.79	0.84	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6617	797	6	0	12	0	0	logfile
✘	7V7U	31782	2021-11-03	2021-08-21	3.0	3.56	—	3.4	0.005	0.58	0.0	0.05	13.61	0.00	2.194	7.32	0.00	4.8	95.1	0.1	0.24	0.81	0.84	2.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25283	3088	41	0	83	0	0	logfile
✘	7PPo	13583	2021-11-02	2021-09-14	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10991	1382	5	0	3	0	1	logfile
✘	7MN5	23916	2021-11-01	2021-04-30	2.93	3.53	3.04	3.3	0.012	1.45	0.0	0.08	10.92	0.01	2.311	0.48	0.00	3.3	96.7	0.0	-0.05	0.82	0.81	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9526	1213	8	0	13	0	0	logfile
✘	7RWL	24718	2021-11-23	2021-08-20	3.14	3.54	—	3.5	0.011	1.32	180.0	0.10	13.47	0.01	2.117	21.05	1.09	1.7	98.3	0.0	-1.02	0.63	0.81	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	248580	31020	60	0	0	0	0	logfile
✘	3J9E	6240	2021-11-01	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	20.69	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4098	520	1	0	0	0	0	logfile
✘	7oY8	13110	2021-11-03	2021-06-23	2.5	2.51	—	2.6	0.007	0.85	0.0	0.05	14.49	0.01	1.197	0.65	0.21	2.4	97.6	0.0	0.49	0.72	0.78	2.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22902	2293	103	0	68	372	0	logfile
✘	6XXE	10648	2021-11-02	2020-01-27	3.49	2.31	—	3.3	0.007	1.09	0.0	0.06	11.82	0.00	2.471	6.11	2.27	11.0	89.0	0.0	-4.99	0.62	0.57	3.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12816	1776	16	0	0	0	0	logfile
✘	5WP9	8874	2021-11-02	2017-08-03	4.22	4.31	2.20	5.2	0.011	1.22	0.0	0.05	9.98	0.02	1.259	2.30	0.63	5.5	93.1	1.4	-0.58	0.51	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	117048	7352	24	0	16	0	59080	logfile
✘	6HWH	0289	2021-11-05	2018-10-12	3.3	3.56	—	3.5	0.013	2.18	1.0	0.20	12.80	0.01	0.691	7.68	0.51	9.4	90.5	0.1	-5.53	0.71	0.81	4.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40632	4916	40	0	420	0	0	logfile

• ← previous
• Page 4 of 307
• next →