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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7CUM | 30472 | 2022-12-18 | 2020-08-23 | 3.52 | 3.83 | — | 3.8 | 0.007 | 1.14 | 3.0 | 0.08 | 14.62 | 0.01 | 1.183 | 10.92 | 0.34 | 7.1 | 92.9 | 0.0 | -4.26 | 0.69 | 0.76 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22214 | 1358 | 4 | 0 | 19 | 0 | 10852 | logfile |
✘ | 6TU7 | 10590 | 2022-12-18 | 2020-01-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 5YWP | 6855 | 2022-12-18 | 2017-11-29 | 4.6 | 5.26 | — | 20.0 | 0.005 | 0.98 | 0.0 | 0.05 | 9.48 | 0.01 | 2.023 | 48.83 | 0.00 | 7.3 | 92.1 | 0.6 | -3.63 | 0.12 | 0.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19561 | 2588 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 6SM3 | 10241 | 2022-12-21 | 2019-08-21 | 3.3 | 3.34 | — | 3.3 | 0.009 | 0.95 | 0.0 | 0.06 | 13.87 | 0.01 | 1.169 | 2.56 | 0.26 | 7.6 | 92.4 | 0.0 | -3.64 | 0.76 | 0.86 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22040 | 2796 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6U0M | 20607 | 2022-12-21 | 2019-08-14 | 3.9 | 4.53 | — | 4.3 | 0.005 | 1.05 | 2.0 | 0.06 | 16.74 | 0.01 | 2.211 | 9.82 | 0.47 | 13.2 | 86.7 | 0.2 | -5.28 | 0.81 | 0.63 | -0.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41146 | 5105 | 16 | 34 | 3 | 0 | 0 | logfile |
✘ | 6Voi | 21265 | 2022-12-18 | 2020-01-30 | 4.03 | 3.85 | — | 3.9 | 0.005 | 0.95 | 0.0 | 0.05 | 15.12 | 0.01 | 2.142 | 13.51 | 0.24 | 7.7 | 92.0 | 0.3 | -3.86 | 0.73 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27497 | 3575 | 14 | 0 | 5 | 0 | 0 | logfile |
✘ | 6SML | 10243 | 2022-12-21 | 2019-08-22 | 3.4 | 3.43 | — | 3.4 | 0.009 | 1.00 | 0.0 | 0.06 | 14.43 | 0.01 | 1.173 | 3.67 | 0.09 | 6.7 | 93.3 | 0.1 | -3.42 | 0.74 | 0.83 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22152 | 2810 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6SMQ | 10245 | 2022-12-21 | 2019-08-22 | 3.3 | 3.30 | — | 3.3 | 0.011 | 1.03 | 0.0 | 0.06 | 14.75 | 0.01 | 1.169 | 3.35 | 0.43 | 7.4 | 92.4 | 0.2 | -3.34 | 0.78 | 0.88 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22136 | 2791 | 9 | 0 | 9 | 0 | 0 | logfile |
✘ | 6VoL | 21268 | 2022-12-20 | 2020-01-30 | 4.06 | 3.45 | — | 3.4 | 0.005 | 0.89 | 0.0 | 0.05 | 15.21 | 0.01 | 2.148 | 12.59 | 0.12 | 5.2 | 94.7 | 0.1 | -3.18 | 0.74 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38991 | 5165 | 32 | 0 | 7 | 0 | 0 | logfile |
✘ | 6VL5 | 21230 | 2022-12-18 | 2020-01-22 | 4.5 | 4.57 | 4.20 | 4.4 | 0.018 | 1.68 | 0.0 | 0.10 | 10.25 | 0.01 | 2.242 | 1.05 | 0.20 | 1.2 | 98.8 | 0.0 | 0.88 | 0.79 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15039 | 1719 | 42 | 0 | 105 | 0 | 0 | logfile |
✘ | 6TZ5 | 20589 | 2022-12-19 | 2019-08-10 | 3.1 | 3.56 | 3.05 | 3.7 | 0.003 | 0.51 | 0.0 | 0.04 | 14.11 | 0.00 | 2.220 | 7.23 | 0.00 | 1.1 | 98.9 | 0.0 | 0.24 | 0.40 | 0.55 | -0.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93500 | 12104 | 68 | 0 | 0 | 0 | 0 | logfile |
✘ | 6X80 | 22088 | 2022-12-19 | 2020-06-01 | 3.5 | 3.69 | — | 3.5 | 0.006 | 0.60 | 0.0 | 0.04 | 13.31 | 0.00 | 1.254 | 8.52 | 0.01 | 8.5 | 91.3 | 0.2 | -2.33 | 0.48 | 0.90 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97482 | 12628 | 44 | 0 | 374 | 0 | 0 | logfile |
✘ | 6UZV | 20963 | 2022-12-19 | 2019-11-15 | 3.1 | 3.13 | — | 3.2 | 0.010 | 1.18 | 0.0 | 0.06 | 20.36 | 0.04 | 1.217 | 11.55 | 0.89 | 4.2 | 95.8 | 0.0 | -1.85 | 0.71 | 0.84 | 3.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72606 | 6711 | 60 | 0 | 408 | 0 | 0 | logfile |
✘ | 6VXM | 21444 | 2022-12-18 | 2020-02-22 | 3.06 | 3.76 | — | 3.4 | 0.018 | 1.02 | 0.0 | 0.05 | 12.84 | 0.00 | 2.208 | 5.67 | 0.00 | 3.9 | 96.1 | 0.0 | -2.02 | 0.75 | 0.81 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15064 | 1939 | 14 | 0 | 21 | 0 | 0 | logfile |
✘ | 6LHU | 0899 | 2022-12-18 | 2019-12-10 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23169 | 1518 | 2 | 0 | 0 | 0 | 11483 | logfile |
✘ | 6LHS | 0896 | 2022-12-18 | 2019-12-10 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22737 | 1456 | 2 | 0 | 0 | 0 | 11313 | logfile |
✘ | 6VoY | 21301 | 2022-12-18 | 2020-02-01 | 3.7 | 4.09 | — | 4.0 | 0.013 | 1.52 | 30.0 | 0.10 | 24.39 | 0.01 | 1.583 | 35.15 | 0.46 | 2.4 | 97.6 | 0.0 | -6.32 | 0.69 | 0.82 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17556 | 1724 | 16 | 180 | 6 | 0 | 0 | logfile |
✘ | 6PW6 | 20500 | 2022-12-18 | 2019-07-22 | 4.5 | 4.56 | 4.36 | 4.5 | 0.021 | 1.78 | 0.0 | 0.11 | 10.80 | 0.01 | 2.200 | 1.86 | 0.56 | 2.7 | 97.2 | 0.2 | 0.50 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15942 | 1842 | 45 | 0 | 108 | 0 | 0 | logfile |
✘ | 6VXZ | 21453 | 2022-12-18 | 2020-02-25 | 3.42 | 3.56 | 3.37 | 3.6 | 0.011 | 1.06 | 0.0 | 0.06 | 19.90 | 0.01 | 1.959 | 12.76 | 2.40 | 8.1 | 91.9 | 0.0 | -3.97 | 0.71 | 0.81 | 1.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13324 | 1556 | 8 | 0 | 28 | 0 | 0 | logfile |
✘ | 7K0K | 22600 | 2022-12-18 | 2020-09-04 | 2.6 | 2.96 | — | 2.9 | 0.006 | 0.68 | 0.0 | 0.05 | 12.44 | 0.00 | 1.915 | 7.70 | 0.00 | 2.2 | 97.8 | 0.0 | 0.53 | 0.68 | 0.85 | 4.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7615 | 964 | 4 | 0 | 2 | 0 | 0 | logfile |