Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PWE	20506	2023-04-22	2019-07-22	3.95	4.04	—	4.0	0.010	0.93	0.0	0.05	27.27	0.01	2.264	5.38	0.00	7.4	92.3	0.3	-6.65	0.70	0.80	2.98	4.0	0.004	0.65	0.0	0.03	28.43	0.00	2.085	11.70	0.65	4.3	95.6	0.1	-1.43	1.44	0.70	0.80	1.58	11923	744	10	294	0	0	0	logfile
✔	6QM5	4588	2023-04-21	2019-02-01	3.6	3.74	3.61	3.7	0.007	0.83	0.0	0.05	15.76	0.01	2.311	4.02	0.00	4.1	95.9	0.0	-6.65	0.70	0.85	2.84	3.7	0.005	0.68	0.0	0.04	16.89	0.00	2.118	7.80	0.26	3.5	96.5	0.0	-0.81	0.50	0.70	0.85	2.00	10874	1346	4	0	4	0	0	logfile
✔	6S8N	10125	2023-04-20	2019-07-10	3.1	3.26	—	3.3	0.012	1.73	0.0	0.06	16.48	0.01	1.791	6.47	0.12	8.7	91.1	0.2	-6.61	0.69	0.82	1.71	3.3	0.005	0.79	0.0	0.04	17.29	0.00	1.956	9.39	1.10	6.6	93.3	0.1	-1.70	0.64	0.67	0.84	1.66	7831	970	8	0	7	0	0	logfile
✔	7DV5	30870	2023-04-21	2021-01-12	3.7	3.37	—	3.7	0.011	1.46	6.0	0.08	13.90	0.01	1.936	9.61	2.23	11.7	88.2	0.1	-6.60	0.63	0.79	2.16	3.7	0.002	0.66	0.0	0.04	16.09	0.00	2.213	9.45	0.30	6.7	93.3	0.0	-3.47	1.63	0.63	0.78	0.87	9319	1189	1	0	2	0	0	logfile
✔	3LoS	5137	2023-04-22	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.16	0.0	0.05	15.91	0.01	2.171	27.07	0.03	20.2	75.7	4.1	-4.25	1.37	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	6YKP	10829	2023-04-21	2020-04-06	2.98	3.28	3.05	3.3	0.014	1.23	0.0	0.07	10.75	0.01	2.350	2.77	0.09	3.0	97.0	0.1	-6.56	0.59	0.85	4.85	3.3	0.003	0.72	0.0	0.04	15.78	0.00	2.237	7.57	1.67	2.1	97.8	0.1	0.88	1.11	0.60	0.86	2.92	10190	1326	9	0	0	7	0	logfile
✔	6JCW	9799	2023-04-29	2019-01-30	3.04	3.78	—	3.4	0.007	0.88	0.0	0.05	15.38	0.01	2.168	1.88	0.35	6.1	93.9	0.0	-6.55	0.88	0.88	4.46	3.5	0.004	0.68	0.0	0.04	16.33	0.00	2.162	4.95	0.03	3.5	96.5	0.0	-0.07	1.31	0.86	0.89	3.75	30888	3912	36	0	24	100	0	logfile
✔	7L1K	23110	2023-04-20	2020-12-14	3.16	3.38	3.16	3.4	0.011	1.35	5.0	0.27	15.11	0.01	2.317	5.62	0.75	9.8	89.9	0.3	-6.55	0.73	0.88	3.48	3.4	0.003	0.67	0.0	0.04	16.17	0.00	2.218	7.64	0.38	7.8	92.2	0.0	-1.95	0.95	0.75	0.89	2.69	7217	883	6	0	2	0	0	logfile
✔	6o6R	0636	2023-04-28	2019-03-07	3.2	3.33	—	3.3	0.010	1.01	0.0	0.06	15.85	0.01	2.114	7.37	0.00	7.6	92.4	0.0	-6.54	0.61	0.79	2.48	3.3	0.003	0.66	0.0	0.04	16.63	0.00	2.224	11.11	0.13	8.0	92.0	0.0	-0.90	0.55	0.61	0.81	2.15	27744	3332	8	0	28	0	0	logfile
✔	6TQF	10550	2023-04-21	2019-12-16	3.5	3.81	—	3.7	0.007	0.99	0.0	0.05	15.75	0.01	2.092	3.00	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.003	0.59	0.0	0.04	15.83	0.00	1.970	2.62	0.00	3.6	96.4	0.0	-3.38	0.38	0.74	0.90	2.77	10426	1268	4	0	14	0	0	logfile
✔	6GCT	4386	2023-04-21	2018-04-19	3.85	3.94	3.80	3.9	0.012	1.40	0.0	0.07	14.50	0.01	2.330	6.80	5.57	5.8	93.9	0.2	-6.53	0.67	0.83	1.60	3.9	0.006	1.07	0.0	0.05	15.31	0.00	2.130	16.47	0.98	5.8	94.2	0.0	-2.26	0.72	0.65	0.84	1.77	9672	1299	6	0	0	0	0	logfile
✔	7BSU	30167	2023-04-21	2020-03-31	3.2	3.35	—	3.3	0.006	0.60	0.0	0.04	17.87	0.01	1.626	31.07	7.59	7.6	92.4	0.0	-6.52	0.59	0.85	3.64	3.3	0.003	0.68	0.0	0.04	16.94	0.00	2.009	8.46	0.39	4.4	95.6	0.0	-1.79	0.95	0.64	0.89	3.52	9325	1138	4	0	7	0	0	logfile
✔	8GoF	34177	2023-04-20	2022-08-24	3.0	2.97	3.06	3.1	0.006	0.80	0.0	0.05	12.71	0.01	2.269	7.05	0.00	2.5	97.5	0.0	-6.52	0.44	0.81	3.59	3.1	0.004	0.58	0.0	0.04	14.49	0.00	2.219	8.85	1.14	2.5	97.5	0.0	1.11	1.48	0.44	0.82	2.90	3299	407	1	0	1	0	0	logfile
✔	6Z7Q	11112	2023-04-24	2020-06-01	3.8	4.10	3.58	4.0	0.006	0.77	0.0	0.05	14.47	0.00	2.176	21.13	0.00	28.6	70.7	0.7	-6.49	0.73	0.82	1.75	4.0	0.005	0.92	0.0	0.05	16.92	0.00	2.170	21.04	0.91	17.3	82.6	0.0	-4.35	1.20	0.75	0.83	1.27	16665	2080	5	0	0	0	0	logfile
✔	6S8H	10122	2023-04-20	2019-07-10	3.7	3.89	—	3.8	0.011	1.65	0.0	0.16	16.87	0.01	2.300	5.75	0.12	9.9	89.8	0.2	-6.48	0.67	0.83	0.98	3.8	0.003	0.77	0.0	0.04	18.05	0.00	2.095	10.37	0.62	7.4	92.5	0.1	-2.00	0.64	0.67	0.83	1.25	7818	959	6	0	7	0	0	logfile
✘	6X2L	22011	2023-04-21	2020-05-20	2.85	2.95	—	2.9	0.009	0.96	0.0	0.06	13.68	0.01	2.078	2.99	0.00	2.5	97.5	0.0	-6.46	0.64	0.88	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9396	1233	3	0	0	0	0	logfile
✔	6LZ3	30022	2023-04-23	2020-02-18	3.2	3.37	3.26	3.3	0.007	1.20	0.0	0.06	16.42	0.01	2.201	4.66	3.86	8.7	90.9	0.4	-6.45	0.80	0.81	2.16	3.3	0.003	0.64	0.0	0.04	16.09	0.00	2.134	9.41	0.30	7.2	92.8	0.0	-1.94	0.68	0.80	0.83	2.69	15968	1944	8	0	4	0	0	logfile
✔	5iRX	8117	2023-04-22	2016-03-14	2.95	3.39	2.91	3.3	0.014	1.44	0.0	0.07	15.36	0.01	1.744	9.65	0.00	10.7	89.2	0.1	-6.45	0.67	0.77	3.80	3.4	0.004	0.73	0.0	0.04	16.65	0.00	2.241	8.73	1.73	8.2	91.8	0.0	-0.58	0.68	0.62	0.82	1.93	13162	1726	12	0	20	0	0	logfile
✔	7E1A	30938	2023-04-21	2021-02-01	3.66	4.00	—	3.9	0.012	1.39	0.0	0.07	13.29	0.01	2.233	7.56	0.81	11.6	88.3	0.1	-6.43	0.63	0.78	1.89	3.9	0.003	0.75	0.0	0.04	15.83	0.00	2.156	10.94	0.81	6.8	93.2	0.0	-3.36	1.35	0.63	0.78	1.26	9284	1189	1	0	1	0	0	logfile
✔	6VXH	21437	2023-04-21	2020-02-21	4.0	4.27	—	4.2	0.006	1.07	0.0	0.06	15.59	0.01	2.245	5.74	0.31	9.9	89.9	0.2	-6.42	0.65	0.82	—	4.2	0.003	0.78	0.0	0.04	16.99	0.00	2.180	9.97	0.21	7.6	92.4	0.0	-2.65	0.61	0.64	0.81	—	8879	1130	4	0	3	0	0	logfile

• ← previous
• Page 2 of 372
• next →