Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X3F	22021	2021-09-02	2020-05-21	3.03	3.23	—	3.3	0.006	0.93	0.0	0.06	14.75	0.01	2.351	3.78	0.00	5.0	95.0	0.0	-6.78	0.58	0.85	3.24	3.3	0.002	0.60	0.0	0.04	15.89	0.00	2.290	6.00	0.39	3.4	96.6	0.0	-0.19	1.27	0.59	0.86	2.07	9366	1227	6	0	3	0	0	logfile
✔	6KiQ	9997	2021-09-03	2019-07-19	3.62	3.66	—	3.8	0.035	3.74	145.0	0.27	19.81	0.04	2.201	10.74	14.75	18.6	70.7	10.7	-6.77	0.58	0.71	1.68	3.5	0.003	0.76	0.0	0.04	17.09	0.01	2.010	11.20	0.36	10.3	89.1	0.6	-2.27	1.22	0.62	0.75	1.16	15093	968	3	0	0	0	7444	logfile
✔	6oFH	20046	2021-09-03	2019-03-29	3.7	3.79	—	3.8	0.008	0.75	0.0	0.05	7.71	0.01	2.097	3.74	0.00	5.3	94.7	0.0	-6.76	0.59	0.83	1.69	3.8	0.005	0.72	0.0	0.04	17.12	0.00	2.118	9.96	0.56	4.2	95.8	0.0	2.28	1.89	0.60	0.84	0.63	11628	1482	19	0	0	0	0	logfile
✔	7K4A	22662	2021-09-04	2020-09-15	3.26	3.68	—	3.7	0.028	2.77	0.0	0.31	16.92	0.01	2.263	3.83	0.52	10.5	89.4	0.2	-6.74	0.52	0.81	4.18	3.7	0.003	0.98	0.0	0.04	15.68	0.00	2.174	11.67	0.14	10.3	89.7	0.0	-2.68	1.35	0.63	0.87	2.51	20825	2420	8	0	65	0	0	logfile
✔	7D10	30542	2021-09-02	2020-09-12	3.52	3.70	—	3.7	0.007	1.05	0.0	0.06	10.77	0.01	2.249	4.93	0.00	8.9	90.6	0.5	-6.70	0.65	0.83	3.73	3.7	0.004	0.75	0.0	0.04	14.18	0.01	2.240	7.68	0.67	6.8	93.0	0.2	-1.40	1.23	0.64	0.83	2.73	6424	892	4	0	4	0	0	logfile
✔	6TUQ	10594	2021-09-03	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.002	0.71	0.0	0.04	12.23	0.00	2.242	10.20	0.25	0.0	100.0	0.0	-0.58	1.70	0.69	0.88	0.87	16100	2300	50	0	0	0	0	logfile
✔	6HYD	0308	2021-09-03	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.59	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	3.9	0.003	0.68	0.0	0.04	14.54	0.00	2.234	5.38	0.24	5.8	94.0	0.2	-1.35	1.76	0.77	0.80	1.57	12168	1543	1	0	31	0	0	logfile
✔	5o3L	3741	2021-09-03	2017-05-24	3.4	3.71	3.34	3.7	0.012	1.03	0.0	0.06	8.97	0.01	2.111	9.60	0.00	22.4	77.6	0.0	-6.67	0.60	0.69	2.44	3.6	0.004	0.81	0.0	0.05	15.40	0.01	1.930	15.58	0.78	15.1	84.9	0.0	-5.10	2.89	0.57	0.75	2.67	11360	730	10	0	0	0	5790	logfile
✔	6S8G	10121	2021-09-03	2019-07-10	3.5	3.70	—	3.7	0.009	1.22	0.0	0.06	17.35	0.01	1.408	5.62	3.86	14.7	85.2	0.1	-6.67	0.67	0.82	1.81	3.7	0.004	0.81	0.0	0.05	17.97	0.00	2.170	10.71	0.25	12.3	87.6	0.1	-2.90	0.73	0.67	0.83	1.56	7530	957	7	0	3	0	0	logfile
✔	6PWE	20506	2021-09-03	2019-07-22	3.95	4.04	—	4.0	0.010	0.93	0.0	0.05	27.27	0.01	2.264	5.37	0.00	7.4	92.3	0.3	-6.65	0.70	0.80	2.98	4.0	0.005	0.70	0.0	0.04	28.69	0.01	2.063	12.93	0.97	4.9	95.1	0.0	-1.96	1.44	0.70	0.81	1.70	11923	744	10	294	0	0	0	logfile
✔	6QM5	4588	2021-09-03	2019-02-01	3.6	3.74	3.61	3.7	0.007	0.83	0.0	0.05	15.76	0.01	2.311	4.02	0.00	4.1	95.9	0.0	-6.65	0.70	0.85	2.84	3.7	0.004	0.67	0.0	0.04	16.97	0.01	2.105	7.57	0.26	3.8	96.2	0.0	-0.94	0.51	0.71	0.85	2.10	10874	1346	4	0	4	0	0	logfile
✔	6LR0	0956	2021-09-02	2020-01-15	3.5	2.83	—	3.5	0.009	1.28	0.0	0.07	13.02	0.01	2.228	5.41	1.27	11.1	88.8	0.1	-6.63	0.49	0.72	1.90	3.5	0.012	1.21	1.0	0.05	16.66	0.01	2.219	10.66	0.78	7.5	92.5	0.0	-3.74	0.88	0.48	0.72	1.38	9587	1232	1	0	0	0	0	logfile
✔	6H3J	0134	2021-09-04	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.22	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.002	0.59	0.0	0.04	13.50	0.00	1.935	54.13	0.23	16.1	83.9	0.0	-5.01	2.69	0.77	0.85	2.73	20301	2511	3	0	0	0	212	logfile
✔	6S8N	10125	2021-09-02	2019-07-10	3.1	3.26	—	3.3	0.013	1.72	0.0	0.06	16.55	0.01	1.791	6.47	0.12	8.7	91.1	0.2	-6.61	0.69	0.82	1.71	3.3	0.004	0.76	0.0	0.04	17.08	0.00	1.160	9.08	0.24	7.1	92.9	0.0	-1.57	0.68	0.70	0.84	1.67	7831	970	8	0	7	0	0	logfile
✔	3LoS	5137	2021-09-03	2010-02-04	4.3	2.98	—	3.0	0.008	2.45	224.0	0.19	19.87	0.01	2.259	86.73	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.005	1.23	0.0	0.05	15.67	0.01	2.130	27.58	0.01	21.0	75.3	3.7	-4.16	1.43	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	6YKP	10829	2021-09-03	2020-04-06	2.98	3.28	3.05	3.3	0.014	1.23	0.0	0.07	10.75	0.01	2.350	2.72	0.09	3.0	97.0	0.1	-6.56	0.59	0.85	4.85	3.3	0.004	0.75	0.0	0.05	15.98	0.00	2.242	8.10	1.30	2.4	97.5	0.1	0.62	1.11	0.61	0.86	3.41	10190	1326	9	0	0	7	0	logfile
✔	5KiP	8253	2021-09-03	2016-06-16	3.7	3.93	—	4.0	0.008	0.89	0.0	0.05	8.52	0.01	0.949	46.88	0.00	16.3	83.7	0.0	-6.55	0.77	0.84	2.69	4.0	0.005	0.79	0.0	0.05	13.62	0.01	2.033	17.14	0.26	7.6	92.4	0.0	-4.02	0.84	0.72	0.84	1.82	171120	23400	180	0	0	0	0	logfile
✔	6JCW	9799	2021-09-05	2019-01-30	3.04	3.78	—	3.4	0.007	0.90	0.0	0.05	15.38	0.01	2.168	1.88	0.35	6.1	93.9	0.0	-6.55	0.88	0.88	4.46	3.5	0.003	0.66	0.0	0.04	16.30	0.00	2.175	4.09	0.03	2.6	97.4	0.0	0.39	1.32	0.87	0.91	3.48	30888	3912	36	0	24	100	0	logfile
✔	7L1K	23110	2021-09-02	2020-12-14	3.16	3.38	3.16	3.4	0.011	1.31	5.0	0.24	14.90	0.01	2.317	5.55	0.75	9.8	89.9	0.3	-6.55	0.73	0.88	3.48	3.4	0.003	0.66	0.0	0.04	15.83	0.00	2.126	6.46	0.00	7.9	92.1	0.0	-1.69	0.97	0.76	0.89	2.63	7217	883	6	0	2	0	0	logfile
✔	6o6R	0636	2021-09-05	2019-03-07	3.2	3.33	—	3.3	0.013	1.26	0.0	0.16	16.71	0.01	2.114	7.32	0.00	7.6	92.4	0.0	-6.54	0.61	0.79	2.48	3.3	0.008	0.89	0.0	0.04	16.87	0.00	2.002	14.92	0.07	7.6	92.4	0.0	-1.38	0.55	0.63	0.81	2.52	27744	3332	8	0	28	0	0	logfile

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