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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PWE | 20506 | 2023-04-22 | 2019-07-22 | 3.95 | 4.04 | — | 4.0 | 0.010 | 0.93 | 0.0 | 0.05 | 27.27 | 0.01 | 2.264 | 5.38 | 0.00 | 7.4 | 92.3 | 0.3 | -6.65 | 0.70 | 0.80 | 2.98 | 4.0 | 0.004 | 0.65 | 0.0 | 0.03 | 28.43 | 0.00 | 2.085 | 11.70 | 0.65 | 4.3 | 95.6 | 0.1 | -1.43 | 1.44 | 0.70 | 0.80 | 1.58 | 11923 | 744 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 6QM5 | 4588 | 2023-04-21 | 2019-02-01 | 3.6 | 3.74 | 3.61 | 3.7 | 0.007 | 0.83 | 0.0 | 0.05 | 15.76 | 0.01 | 2.311 | 4.02 | 0.00 | 4.1 | 95.9 | 0.0 | -6.65 | 0.70 | 0.85 | 2.84 | 3.7 | 0.005 | 0.68 | 0.0 | 0.04 | 16.89 | 0.00 | 2.118 | 7.80 | 0.26 | 3.5 | 96.5 | 0.0 | -0.81 | 0.50 | 0.70 | 0.85 | 2.00 | 10874 | 1346 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6S8N | 10125 | 2023-04-20 | 2019-07-10 | 3.1 | 3.26 | — | 3.3 | 0.012 | 1.73 | 0.0 | 0.06 | 16.48 | 0.01 | 1.791 | 6.47 | 0.12 | 8.7 | 91.1 | 0.2 | -6.61 | 0.69 | 0.82 | 1.71 | 3.3 | 0.005 | 0.79 | 0.0 | 0.04 | 17.29 | 0.00 | 1.956 | 9.39 | 1.10 | 6.6 | 93.3 | 0.1 | -1.70 | 0.64 | 0.67 | 0.84 | 1.66 | 7831 | 970 | 8 | 0 | 7 | 0 | 0 | logfile |
✔ | 7DV5 | 30870 | 2023-04-21 | 2021-01-12 | 3.7 | 3.37 | — | 3.7 | 0.011 | 1.46 | 6.0 | 0.08 | 13.90 | 0.01 | 1.936 | 9.61 | 2.23 | 11.7 | 88.2 | 0.1 | -6.60 | 0.63 | 0.79 | 2.16 | 3.7 | 0.002 | 0.66 | 0.0 | 0.04 | 16.09 | 0.00 | 2.213 | 9.45 | 0.30 | 6.7 | 93.3 | 0.0 | -3.47 | 1.63 | 0.63 | 0.78 | 0.87 | 9319 | 1189 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2023-04-22 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.004 | 1.16 | 0.0 | 0.05 | 15.91 | 0.01 | 2.171 | 27.07 | 0.03 | 20.2 | 75.7 | 4.1 | -4.25 | 1.37 | 0.62 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YKP | 10829 | 2023-04-21 | 2020-04-06 | 2.98 | 3.28 | 3.05 | 3.3 | 0.014 | 1.23 | 0.0 | 0.07 | 10.75 | 0.01 | 2.350 | 2.77 | 0.09 | 3.0 | 97.0 | 0.1 | -6.56 | 0.59 | 0.85 | 4.85 | 3.3 | 0.003 | 0.72 | 0.0 | 0.04 | 15.78 | 0.00 | 2.237 | 7.57 | 1.67 | 2.1 | 97.8 | 0.1 | 0.88 | 1.11 | 0.60 | 0.86 | 2.92 | 10190 | 1326 | 9 | 0 | 0 | 7 | 0 | logfile |
✔ | 6JCW | 9799 | 2023-04-29 | 2019-01-30 | 3.04 | 3.78 | — | 3.4 | 0.007 | 0.88 | 0.0 | 0.05 | 15.38 | 0.01 | 2.168 | 1.88 | 0.35 | 6.1 | 93.9 | 0.0 | -6.55 | 0.88 | 0.88 | 4.46 | 3.5 | 0.004 | 0.68 | 0.0 | 0.04 | 16.33 | 0.00 | 2.162 | 4.95 | 0.03 | 3.5 | 96.5 | 0.0 | -0.07 | 1.31 | 0.86 | 0.89 | 3.75 | 30888 | 3912 | 36 | 0 | 24 | 100 | 0 | logfile |
✔ | 7L1K | 23110 | 2023-04-20 | 2020-12-14 | 3.16 | 3.38 | 3.16 | 3.4 | 0.011 | 1.35 | 5.0 | 0.27 | 15.11 | 0.01 | 2.317 | 5.62 | 0.75 | 9.8 | 89.9 | 0.3 | -6.55 | 0.73 | 0.88 | 3.48 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 16.17 | 0.00 | 2.218 | 7.64 | 0.38 | 7.8 | 92.2 | 0.0 | -1.95 | 0.95 | 0.75 | 0.89 | 2.69 | 7217 | 883 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6o6R | 0636 | 2023-04-28 | 2019-03-07 | 3.2 | 3.33 | — | 3.3 | 0.010 | 1.01 | 0.0 | 0.06 | 15.85 | 0.01 | 2.114 | 7.37 | 0.00 | 7.6 | 92.4 | 0.0 | -6.54 | 0.61 | 0.79 | 2.48 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 16.63 | 0.00 | 2.224 | 11.11 | 0.13 | 8.0 | 92.0 | 0.0 | -0.90 | 0.55 | 0.61 | 0.81 | 2.15 | 27744 | 3332 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 6TQF | 10550 | 2023-04-21 | 2019-12-16 | 3.5 | 3.81 | — | 3.7 | 0.007 | 0.99 | 0.0 | 0.05 | 15.75 | 0.01 | 2.092 | 3.00 | 0.09 | 5.2 | 94.8 | 0.0 | -6.53 | 0.74 | 0.90 | 2.73 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 15.83 | 0.00 | 1.970 | 2.62 | 0.00 | 3.6 | 96.4 | 0.0 | -3.38 | 0.38 | 0.74 | 0.90 | 2.77 | 10426 | 1268 | 4 | 0 | 14 | 0 | 0 | logfile |
✔ | 6GCT | 4386 | 2023-04-21 | 2018-04-19 | 3.85 | 3.94 | 3.80 | 3.9 | 0.012 | 1.40 | 0.0 | 0.07 | 14.50 | 0.01 | 2.330 | 6.80 | 5.57 | 5.8 | 93.9 | 0.2 | -6.53 | 0.67 | 0.83 | 1.60 | 3.9 | 0.006 | 1.07 | 0.0 | 0.05 | 15.31 | 0.00 | 2.130 | 16.47 | 0.98 | 5.8 | 94.2 | 0.0 | -2.26 | 0.72 | 0.65 | 0.84 | 1.77 | 9672 | 1299 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BSU | 30167 | 2023-04-21 | 2020-03-31 | 3.2 | 3.35 | — | 3.3 | 0.006 | 0.60 | 0.0 | 0.04 | 17.87 | 0.01 | 1.626 | 31.07 | 7.59 | 7.6 | 92.4 | 0.0 | -6.52 | 0.59 | 0.85 | 3.64 | 3.3 | 0.003 | 0.68 | 0.0 | 0.04 | 16.94 | 0.00 | 2.009 | 8.46 | 0.39 | 4.4 | 95.6 | 0.0 | -1.79 | 0.95 | 0.64 | 0.89 | 3.52 | 9325 | 1138 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 8GoF | 34177 | 2023-04-20 | 2022-08-24 | 3.0 | 2.97 | 3.06 | 3.1 | 0.006 | 0.80 | 0.0 | 0.05 | 12.71 | 0.01 | 2.269 | 7.05 | 0.00 | 2.5 | 97.5 | 0.0 | -6.52 | 0.44 | 0.81 | 3.59 | 3.1 | 0.004 | 0.58 | 0.0 | 0.04 | 14.49 | 0.00 | 2.219 | 8.85 | 1.14 | 2.5 | 97.5 | 0.0 | 1.11 | 1.48 | 0.44 | 0.82 | 2.90 | 3299 | 407 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6Z7Q | 11112 | 2023-04-24 | 2020-06-01 | 3.8 | 4.10 | 3.58 | 4.0 | 0.006 | 0.77 | 0.0 | 0.05 | 14.47 | 0.00 | 2.176 | 21.13 | 0.00 | 28.6 | 70.7 | 0.7 | -6.49 | 0.73 | 0.82 | 1.75 | 4.0 | 0.005 | 0.92 | 0.0 | 0.05 | 16.92 | 0.00 | 2.170 | 21.04 | 0.91 | 17.3 | 82.6 | 0.0 | -4.35 | 1.20 | 0.75 | 0.83 | 1.27 | 16665 | 2080 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S8H | 10122 | 2023-04-20 | 2019-07-10 | 3.7 | 3.89 | — | 3.8 | 0.011 | 1.65 | 0.0 | 0.16 | 16.87 | 0.01 | 2.300 | 5.75 | 0.12 | 9.9 | 89.8 | 0.2 | -6.48 | 0.67 | 0.83 | 0.98 | 3.8 | 0.003 | 0.77 | 0.0 | 0.04 | 18.05 | 0.00 | 2.095 | 10.37 | 0.62 | 7.4 | 92.5 | 0.1 | -2.00 | 0.64 | 0.67 | 0.83 | 1.25 | 7818 | 959 | 6 | 0 | 7 | 0 | 0 | logfile |
✘ | 6X2L | 22011 | 2023-04-21 | 2020-05-20 | 2.85 | 2.95 | — | 2.9 | 0.009 | 0.96 | 0.0 | 0.06 | 13.68 | 0.01 | 2.078 | 2.99 | 0.00 | 2.5 | 97.5 | 0.0 | -6.46 | 0.64 | 0.88 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9396 | 1233 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LZ3 | 30022 | 2023-04-23 | 2020-02-18 | 3.2 | 3.37 | 3.26 | 3.3 | 0.007 | 1.20 | 0.0 | 0.06 | 16.42 | 0.01 | 2.201 | 4.66 | 3.86 | 8.7 | 90.9 | 0.4 | -6.45 | 0.80 | 0.81 | 2.16 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 16.09 | 0.00 | 2.134 | 9.41 | 0.30 | 7.2 | 92.8 | 0.0 | -1.94 | 0.68 | 0.80 | 0.83 | 2.69 | 15968 | 1944 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 5iRX | 8117 | 2023-04-22 | 2016-03-14 | 2.95 | 3.39 | 2.91 | 3.3 | 0.014 | 1.44 | 0.0 | 0.07 | 15.36 | 0.01 | 1.744 | 9.65 | 0.00 | 10.7 | 89.2 | 0.1 | -6.45 | 0.67 | 0.77 | 3.80 | 3.4 | 0.004 | 0.73 | 0.0 | 0.04 | 16.65 | 0.00 | 2.241 | 8.73 | 1.73 | 8.2 | 91.8 | 0.0 | -0.58 | 0.68 | 0.62 | 0.82 | 1.93 | 13162 | 1726 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 7E1A | 30938 | 2023-04-21 | 2021-02-01 | 3.66 | 4.00 | — | 3.9 | 0.012 | 1.39 | 0.0 | 0.07 | 13.29 | 0.01 | 2.233 | 7.56 | 0.81 | 11.6 | 88.3 | 0.1 | -6.43 | 0.63 | 0.78 | 1.89 | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 15.83 | 0.00 | 2.156 | 10.94 | 0.81 | 6.8 | 93.2 | 0.0 | -3.36 | 1.35 | 0.63 | 0.78 | 1.26 | 9284 | 1189 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6VXH | 21437 | 2023-04-21 | 2020-02-21 | 4.0 | 4.27 | — | 4.2 | 0.006 | 1.07 | 0.0 | 0.06 | 15.59 | 0.01 | 2.245 | 5.74 | 0.31 | 9.9 | 89.9 | 0.2 | -6.42 | 0.65 | 0.82 | — | 4.2 | 0.003 | 0.78 | 0.0 | 0.04 | 16.99 | 0.00 | 2.180 | 9.97 | 0.21 | 7.6 | 92.4 | 0.0 | -2.65 | 0.61 | 0.64 | 0.81 | — | 8879 | 1130 | 4 | 0 | 3 | 0 | 0 | logfile |