Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PVN	20494	2022-07-04	2019-07-21	4.07	4.15	—	4.1	0.006	1.33	0.0	0.06	12.87	0.01	2.256	4.31	1.23	14.2	85.3	0.5	-6.84	0.68	0.80	—	4.1	0.003	0.85	0.0	0.04	13.93	0.00	2.237	10.60	0.00	12.9	87.0	0.2	-1.95	1.00	0.69	0.80	—	20874	2576	6	0	2	0	0	logfile
✔	6X3F	22021	2022-07-03	2020-05-21	3.03	3.23	—	3.3	0.006	0.93	0.0	0.06	14.72	0.01	2.351	3.78	0.00	5.0	95.0	0.0	-6.78	0.58	0.85	3.24	3.3	0.002	0.62	0.0	0.04	15.84	0.00	2.290	6.36	0.29	4.0	96.0	0.0	0.02	0.96	0.55	0.85	1.97	9366	1227	6	0	3	0	0	logfile
✔	6KiQ	9997	2022-07-04	2019-07-19	3.62	3.66	—	3.8	0.035	3.74	145.0	0.27	19.81	0.04	2.201	12.33	14.75	18.6	70.7	10.7	-6.77	0.58	0.71	1.68	3.5	0.003	0.77	0.0	0.04	17.23	0.01	2.011	11.20	0.48	10.0	89.4	0.6	-2.44	1.19	0.62	0.74	1.20	15093	968	3	0	0	0	7444	logfile
✔	6oFH	20046	2022-07-03	2019-03-29	3.7	3.79	—	3.8	0.008	0.75	0.0	0.05	7.71	0.01	2.097	3.74	0.00	5.3	94.7	0.0	-6.76	0.59	0.83	1.69	3.8	0.005	0.74	0.0	0.04	17.25	0.00	2.111	11.14	0.48	3.6	96.4	0.0	2.04	1.89	0.60	0.84	0.79	11628	1482	19	0	0	0	0	logfile
✔	7K4A	22662	2022-07-04	2020-09-15	3.26	3.68	—	3.7	0.013	1.44	0.0	0.06	14.78	0.01	2.263	4.02	0.52	10.5	89.4	0.2	-6.74	0.52	0.81	4.18	3.7	0.005	0.80	0.0	0.04	15.62	0.00	2.154	7.76	0.24	9.9	90.0	0.1	-2.53	1.34	0.64	0.86	2.66	20825	2420	8	0	65	0	0	logfile
✔	7D10	30542	2022-07-03	2020-09-12	3.52	3.70	—	3.7	0.007	1.05	0.0	0.06	10.87	0.01	2.249	4.93	0.00	8.9	90.6	0.5	-6.70	0.65	0.83	3.73	3.7	0.007	0.77	0.0	0.04	13.63	0.01	2.221	7.75	0.34	6.5	93.5	0.0	-1.43	1.21	0.63	0.82	2.73	6424	892	4	0	4	0	0	logfile
✔	6TUQ	10594	2022-07-04	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.002	0.69	0.0	0.04	12.40	0.00	2.309	10.56	0.19	0.0	100.0	0.0	-0.42	1.66	0.69	0.88	0.80	16100	2300	50	0	0	0	0	logfile
✔	6HYD	0308	2022-07-03	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.63	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	4.0	0.003	0.69	0.0	0.04	14.49	0.00	2.163	5.59	0.24	5.8	94.0	0.2	-1.37	1.74	0.77	0.80	1.55	12168	1543	1	0	31	0	0	logfile
✔	6S8G	10121	2022-07-03	2019-07-10	3.5	3.70	—	3.7	0.010	1.32	0.0	0.06	17.19	0.01	2.294	5.75	3.86	14.7	85.2	0.1	-6.67	0.67	0.82	1.81	3.7	0.003	0.79	0.0	0.04	17.94	0.00	2.177	9.93	0.37	11.7	88.3	0.0	-2.73	0.73	0.67	0.82	1.52	7530	957	7	0	3	0	0	logfile
✔	5o3L	3741	2022-07-03	2017-05-24	3.4	3.71	3.34	3.7	0.012	1.03	0.0	0.06	8.97	0.01	2.111	10.30	0.00	22.4	77.6	0.0	-6.67	0.60	0.69	2.44	3.6	0.004	0.78	0.0	0.05	15.73	0.01	1.941	16.55	0.31	12.7	87.3	0.0	-5.25	2.67	0.53	0.70	2.54	11360	730	10	0	0	0	5790	logfile
✔	6QM5	4588	2022-07-03	2019-02-01	3.6	3.74	3.61	3.7	0.007	0.83	0.0	0.05	15.76	0.01	2.311	4.11	0.00	4.1	95.9	0.0	-6.65	0.70	0.85	2.84	3.7	0.003	0.63	0.0	0.04	16.91	0.01	2.134	7.16	0.17	2.8	97.2	0.0	-0.40	0.52	0.69	0.84	1.92	10874	1346	4	0	4	0	0	logfile
✔	6PWE	20506	2022-07-03	2019-07-22	3.95	4.04	—	4.0	0.010	0.93	0.0	0.05	27.27	0.01	2.264	5.46	0.00	7.4	92.3	0.3	-6.65	0.70	0.80	2.98	4.0	0.006	0.73	0.0	0.04	28.80	0.01	2.074	14.94	1.29	6.5	93.3	0.3	-1.80	1.42	0.71	0.81	1.61	11923	744	10	294	0	0	0	logfile
✔	6LR0	0956	2022-07-03	2020-01-15	3.5	2.83	—	3.5	0.009	1.28	0.0	0.07	13.02	0.01	2.228	5.46	1.27	11.1	88.8	0.1	-6.63	0.49	0.72	1.90	3.5	0.005	0.86	1.0	0.04	16.59	0.01	2.184	10.45	0.19	7.4	92.6	0.0	-3.47	1.38	0.48	0.72	1.38	9587	1232	1	0	0	0	0	logfile
✔	6H3J	0134	2022-07-04	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.43	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.005	0.65	0.0	0.04	13.39	0.00	1.860	56.31	0.32	21.3	78.7	0.0	-4.95	2.68	0.78	0.86	2.86	20301	2511	3	0	0	0	212	logfile
✘	6S8N	10125	2022-07-03	2019-07-10	3.1	3.26	—	3.3	0.010	1.38	0.0	0.06	15.06	0.01	1.225	6.47	0.12	8.7	91.1	0.2	-6.61	0.69	0.82	1.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7831	970	8	0	7	0	0	logfile
✔	7DV5	30870	2022-07-03	2021-01-12	3.7	3.37	—	3.7	0.011	1.46	6.0	0.08	13.90	0.01	1.936	9.61	2.23	11.7	88.2	0.1	-6.60	0.63	0.79	2.16	3.7	0.003	0.68	0.0	0.04	16.05	0.00	2.220	10.10	0.40	6.8	93.2	0.0	-3.57	1.62	0.63	0.78	0.95	9319	1189	1	0	2	0	0	logfile
✔	3LoS	5137	2022-07-03	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	88.10	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.007	1.33	0.0	0.05	16.09	0.01	1.037	31.44	0.00	20.2	75.6	4.2	-4.47	1.32	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	6YKP	10829	2022-07-03	2020-04-06	2.98	3.28	3.05	3.3	0.014	1.23	0.0	0.07	10.75	0.01	2.350	2.77	0.09	3.0	97.0	0.1	-6.56	0.59	0.85	4.85	3.3	0.003	0.73	0.0	0.04	15.79	0.00	2.229	7.62	1.67	2.4	97.6	0.1	0.93	1.10	0.61	0.86	2.99	10190	1326	9	0	0	7	0	logfile
✔	6JCW	9799	2022-07-06	2019-01-30	3.04	3.78	—	3.4	0.007	0.88	0.0	0.05	15.38	0.01	2.168	1.88	0.35	6.1	93.9	0.0	-6.55	0.88	0.88	4.46	3.5	0.003	0.66	0.0	0.04	16.38	0.00	2.172	4.28	0.03	3.2	96.8	0.0	0.03	1.31	0.86	0.89	3.61	30888	3912	36	0	24	100	0	logfile
✘	7L1K	23110	2022-07-03	2020-12-14	3.16	3.38	3.16	3.4	0.009	1.18	5.0	0.27	14.63	0.01	1.198	5.62	0.75	9.8	89.9	0.3	-6.55	0.73	0.88	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7217	883	6	0	2	0	0	logfile

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