Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oFH	20046	2021-06-02	2019-03-29	3.7	3.79	—	3.8	0.008	0.75	0.0	0.05	7.71	0.01	2.097	3.74	0.00	5.3	94.7	0.0	-6.76	0.59	0.83	1.69	3.8	0.004	0.70	0.0	0.04	17.26	0.00	2.106	10.22	0.24	4.6	95.4	0.0	1.86	1.89	0.60	0.84	0.81	11628	1482	19	0	0	0	0	logfile
✔	7K4A	22662	2021-06-03	2020-09-15	3.26	3.68	—	3.7	0.068	2.88	0.0	0.43	16.14	0.01	2.263	3.83	0.52	10.5	89.4	0.2	-6.74	0.52	0.81	4.18	3.7	0.007	1.68	0.0	0.14	18.96	0.01	2.245	24.35	0.24	10.9	89.0	0.2	-5.34	0.49	0.64	0.87	3.95	20825	2420	8	0	65	0	0	logfile
✔	7D10	30542	2021-06-01	2020-09-12	3.52	3.70	—	3.7	0.007	1.05	0.0	0.06	10.77	0.01	2.249	4.93	0.00	8.9	90.6	0.5	-6.70	0.65	0.83	3.73	3.7	0.004	0.68	0.0	0.04	13.99	0.01	2.226	7.21	0.51	7.3	92.4	0.2	-1.70	1.21	0.64	0.83	2.68	6424	892	4	0	4	0	0	logfile
✔	6HYD	0308	2021-06-02	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.59	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	3.9	0.004	0.70	0.0	0.04	14.81	0.00	2.230	5.63	0.80	5.8	94.0	0.2	-0.92	1.76	0.76	0.79	1.65	12168	1543	1	0	31	0	0	logfile
✔	6TUQ	10594	2021-06-02	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.003	0.72	0.0	0.04	12.41	0.00	2.368	12.09	0.06	0.4	99.6	0.0	-0.47	0.88	0.68	0.88	0.90	16100	2300	50	0	0	0	0	logfile
✔	5o3L	3741	2021-06-02	2017-05-24	3.4	3.71	3.34	3.7	0.012	1.03	0.0	0.06	8.97	0.01	2.111	9.60	0.00	22.4	77.6	0.0	-6.67	0.60	0.69	2.44	3.6	0.003	0.78	0.0	0.05	15.49	0.01	1.922	13.12	0.62	13.2	86.8	0.0	-5.08	2.68	0.55	0.72	2.50	11360	730	10	0	0	0	5790	logfile
✔	6S8G	10121	2021-06-02	2019-07-10	3.5	3.70	—	3.7	0.009	1.22	0.0	0.06	17.35	0.01	1.408	5.62	3.86	14.7	85.2	0.1	-6.67	0.67	0.82	1.81	3.7	0.003	0.76	0.0	0.04	17.94	0.00	2.171	9.47	0.00	10.9	89.0	0.1	-2.48	0.74	0.68	0.82	1.40	7530	957	7	0	3	0	0	logfile
✔	6PWE	20506	2021-06-02	2019-07-22	3.95	4.04	—	4.0	0.010	0.93	0.0	0.05	27.27	0.01	2.264	5.37	0.00	7.4	92.3	0.3	-6.65	0.70	0.80	2.98	4.0	0.004	0.63	0.0	0.03	28.22	0.00	2.080	11.30	0.65	3.7	96.2	0.1	-1.16	1.44	0.70	0.80	1.66	11923	744	10	294	0	0	0	logfile
✔	6QM5	4588	2021-06-02	2019-02-01	3.6	3.74	3.61	3.7	0.007	0.83	0.0	0.05	15.76	0.01	2.311	4.02	0.00	4.1	95.9	0.0	-6.65	0.70	0.85	2.84	3.7	0.003	0.63	0.0	0.04	16.93	0.01	2.107	7.34	0.35	3.6	96.4	0.0	-0.83	0.51	0.70	0.85	1.80	10874	1346	4	0	4	0	0	logfile
✔	6H3J	0134	2021-06-03	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.22	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.003	0.58	0.0	0.04	13.38	0.00	1.918	53.82	0.23	18.7	81.3	0.0	-5.02	1.08	0.77	0.86	2.80	20301	2511	3	0	0	0	212	logfile
✔	6LR0	0956	2021-06-01	2020-01-15	3.5	2.83	—	3.5	0.009	1.28	0.0	0.07	13.02	0.01	2.228	5.41	1.27	11.1	88.8	0.1	-6.63	0.49	0.72	1.90	3.5	0.007	0.84	0.0	0.04	16.71	0.01	2.179	9.20	0.10	7.2	92.8	0.0	-3.51	1.44	0.49	0.72	1.14	9587	1232	1	0	0	0	0	logfile
✘	6S8N	10125	2021-06-01	2019-07-10	3.1	3.26	—	3.3	0.013	1.72	0.0	0.06	16.55	0.01	1.791	6.47	0.12	8.7	91.1	0.2	-6.61	0.69	0.82	1.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7831	970	8	0	7	0	0	logfile
✔	3LoS	5137	2021-06-05	2010-02-04	4.3	2.98	—	3.0	0.008	2.45	224.0	0.19	19.87	0.01	2.259	86.73	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.0	0.005	1.23	0.0	0.05	16.28	0.01	2.105	29.24	0.00	20.8	75.3	3.9	-4.27	1.40	0.62	0.56	—	63712	8512	16	0	0	0	0	logfile
✔	6YKP	10829	2021-06-02	2020-04-06	2.98	3.28	3.05	3.3	0.014	1.23	0.0	0.07	10.75	0.01	2.350	2.72	0.09	3.0	97.0	0.1	-6.56	0.59	0.85	4.85	3.3	0.003	0.72	0.0	0.04	16.03	0.00	2.252	7.91	2.13	2.4	97.6	0.1	0.78	1.11	0.61	0.86	3.33	10190	1326	9	0	0	7	0	logfile
✔	7L1K	23110	2021-06-01	2020-12-14	3.16	3.38	3.16	3.4	0.011	1.35	5.0	0.24	15.01	0.01	2.317	5.55	0.75	9.8	89.9	0.3	-6.55	0.73	0.88	3.48	3.4	0.002	0.65	0.0	0.04	15.84	0.00	2.136	7.01	0.12	7.6	92.4	0.0	-1.50	0.97	0.76	0.89	2.43	7217	883	6	0	2	0	0	logfile
✔	5KiP	8253	2021-06-07	2016-06-16	3.7	3.93	—	4.0	0.008	0.89	0.0	0.05	8.52	0.01	0.949	46.88	0.00	16.3	83.7	0.0	-6.55	0.77	0.84	2.69	4.0	0.004	0.75	0.0	0.05	13.93	0.01	2.010	17.05	0.17	5.6	94.4	0.0	-3.67	0.84	0.72	0.83	1.74	171120	23400	180	0	0	0	0	logfile
✔	6JCW	9799	2021-06-04	2019-01-30	3.04	3.78	—	3.4	0.007	0.90	0.0	0.05	15.38	0.01	2.168	1.88	0.35	6.1	93.9	0.0	-6.55	0.88	0.88	4.46	3.5	0.006	0.70	0.0	0.05	16.46	0.00	2.158	5.09	0.03	3.5	96.5	0.0	-0.24	1.31	0.88	0.91	3.88	30888	3912	36	0	24	100	0	logfile
✔	6o6R	0636	2021-06-03	2019-03-07	3.2	3.33	—	3.3	0.034	1.37	0.0	0.22	16.04	0.01	2.114	7.32	0.00	7.6	92.4	0.0	-6.54	0.61	0.79	2.48	3.3	0.005	0.99	1.0	0.07	17.02	0.01	2.047	15.41	0.20	7.9	92.1	0.0	-4.11	0.37	0.62	0.81	2.57	27744	3332	8	0	28	0	0	logfile
✔	6TQF	10550	2021-06-02	2019-12-16	3.5	3.81	—	3.7	0.009	0.98	0.0	0.06	15.82	0.01	2.092	2.95	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.004	0.61	0.0	0.04	15.93	0.00	1.979	2.48	0.09	3.6	96.4	0.0	-3.82	0.38	0.74	0.90	2.78	10426	1268	4	0	14	0	0	logfile
✔	6GCT	4386	2021-06-02	2018-04-19	3.85	3.94	3.80	3.9	0.012	1.40	0.0	0.07	14.50	0.01	2.330	6.80	5.57	5.8	93.9	0.2	-6.53	0.67	0.83	1.60	3.9	0.006	1.04	0.0	0.05	15.40	0.00	2.104	17.33	1.47	6.0	94.0	0.0	-2.20	1.29	0.67	0.83	2.07	9672	1299	6	0	0	0	0	logfile

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