Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CH0	30367	2023-07-08	2020-07-03	3.7	3.78	—	3.8	0.008	1.11	0.0	0.06	16.08	0.01	1.910	4.94	6.24	10.7	89.0	0.2	-6.21	0.64	0.83	2.02	3.8	0.004	0.72	0.0	0.04	15.81	0.00	2.147	7.53	0.54	8.9	91.1	0.0	-2.48	1.66	0.66	0.84	1.77	15856	2092	14	0	2	0	0	logfile
✔	7B00	11952	2023-07-04	2020-11-17	3.98	3.73	—	4.0	0.006	0.97	0.0	0.08	14.85	0.01	1.838	5.81	0.39	9.5	90.5	0.0	-6.20	0.59	0.79	1.66	4.0	0.003	0.75	0.0	0.04	16.30	0.00	2.149	9.80	0.64	8.2	91.8	0.0	-2.54	0.60	0.64	0.79	1.24	7389	926	7	0	9	0	0	logfile
✔	6LMX	0923	2023-07-07	2019-12-26	3.4	3.53	3.23	3.5	0.019	1.32	0.0	0.07	15.24	0.01	2.161	4.67	1.26	2.1	97.9	0.0	-6.20	0.60	0.78	2.56	3.5	0.003	0.69	0.0	0.04	15.78	0.01	2.133	7.69	0.42	2.8	97.2	0.0	2.19	1.54	0.65	0.82	1.17	15588	2160	9	0	0	0	0	logfile
✔	8HDS	34679	2023-07-03	2022-11-06	3.57	3.28	3.59	3.4	0.007	1.11	0.0	0.06	10.70	0.01	2.312	4.13	0.63	10.9	89.1	0.0	-6.20	0.55	0.77	2.49	3.4	0.004	0.71	0.0	0.04	16.09	0.00	2.083	10.70	0.96	9.7	90.3	0.0	-2.59	1.26	0.56	0.78	1.67	53532	6864	24	0	0	0	0	logfile
✔	8GoE	34176	2023-07-03	2022-08-24	3.0	3.01	3.02	3.1	0.006	0.76	1.0	0.05	12.65	0.01	2.273	6.40	0.57	2.0	98.0	0.0	-6.19	0.46	0.82	4.16	3.1	0.003	0.63	1.0	0.04	14.15	0.00	2.175	7.73	1.70	2.5	97.5	0.0	0.94	0.42	0.45	0.83	3.08	3323	407	1	0	1	0	0	logfile
✔	6JBJ	9791	2023-07-05	2019-01-25	3.6	3.75	—	3.7	0.008	1.04	0.0	0.06	16.15	0.01	2.206	10.64	0.00	9.1	90.9	0.0	-6.19	0.65	0.83	2.03	3.7	0.004	0.77	0.0	0.04	18.34	0.00	2.084	18.07	0.59	8.7	91.3	0.0	-2.08	0.61	0.65	0.82	1.17	9166	1130	4	0	2	0	0	logfile
✔	6LYP	30017	2023-07-07	2020-02-15	3.3	3.12	3.20	3.5	0.011	1.35	0.0	0.08	11.79	0.01	2.148	8.25	1.40	9.8	90.2	0.0	-6.19	0.50	0.70	2.83	3.5	0.005	0.78	0.0	0.05	14.72	0.00	2.225	12.51	0.43	9.8	90.2	0.0	-3.23	1.21	0.54	0.74	2.12	15169	2009	7	0	0	0	0	logfile
✘	6LYU	30018	2023-07-06	2020-02-15	4.2	4.46	—	4.2	0.009	1.16	6.0	0.06	15.38	0.01	1.986	57.04	1.18	23.1	76.2	0.7	-6.16	0.86	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11118	1430	5	0	0	0	0	logfile
✘	8GWN	34317	2023-07-10	2022-09-17	3.38	3.97	3.47	3.7	0.015	1.23	0.0	0.06	18.41	0.01	1.979	38.61	14.07	23.5	75.0	1.5	-6.16	0.86	0.83	1.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21860	2655	12	52	9	0	0	logfile
✔	6JNF	9851	2023-07-04	2019-03-14	3.81	3.96	3.73	4.0	0.009	1.23	0.0	0.06	17.14	0.01	2.304	5.24	1.02	16.7	83.3	0.0	-6.16	0.64	0.82	1.38	4.0	0.003	0.91	0.0	0.05	17.91	0.00	2.133	11.24	0.64	10.5	89.5	0.0	-2.83	1.47	0.67	0.82	1.30	7271	924	11	0	1	0	0	logfile
✔	7DGZ	30676	2023-07-05	2020-11-12	3.8	4.12	—	4.0	0.008	1.43	3.0	0.07	12.24	0.01	1.238	9.03	1.31	17.6	80.9	1.5	-6.15	0.80	0.71	1.44	3.9	0.003	0.87	0.0	0.04	14.39	0.01	2.084	11.40	0.37	14.7	85.1	0.3	-3.35	1.61	0.82	0.73	0.56	60921	7992	61	0	21	0	0	logfile
✔	6VX5	21430	2023-07-06	2020-02-21	3.03	3.58	—	3.5	0.006	0.80	0.0	0.05	14.27	0.00	2.348	4.97	0.00	3.3	96.7	0.0	-6.15	0.72	0.84	2.92	3.5	0.003	0.65	0.0	0.04	16.41	0.00	2.259	9.26	0.50	1.6	98.4	0.0	-0.38	1.27	0.67	0.80	2.34	13056	1575	6	0	1	0	0	logfile
✔	7K4D	22665	2023-07-09	2020-09-15	3.66	4.18	—	4.3	0.010	1.22	0.0	0.06	12.05	0.01	2.205	3.98	0.38	9.1	90.9	0.0	-6.15	0.51	0.74	2.06	4.3	0.003	0.75	0.0	0.04	16.29	0.00	2.129	9.75	0.56	6.6	93.4	0.0	-1.56	0.86	0.54	0.76	1.33	19801	2448	8	0	7	0	0	logfile
✔	5L4K	4002	2023-07-13	2016-05-25	3.9	4.00	—	4.2	0.007	0.85	3.0	0.05	16.12	0.01	1.808	5.03	3.82	11.8	85.0	3.2	-6.15	0.34	0.64	0.39	4.0	0.004	0.79	0.0	0.04	17.43	0.01	1.906	18.52	0.60	9.2	90.4	0.5	-1.87	1.81	0.37	0.70	0.35	79649	5000	12	0	0	0	39990	logfile
✔	6M4G	30077	2023-07-05	2020-03-06	2.8	3.16	—	3.1	0.006	0.93	0.0	0.06	25.71	0.01	2.169	14.42	2.14	2.8	97.2	0.0	-6.14	0.60	0.74	3.05	3.1	0.004	0.67	0.0	0.04	28.39	0.00	2.180	10.30	1.07	1.6	98.4	0.0	1.26	1.29	0.61	0.81	2.64	9010	656	10	186	0	0	0	logfile
✔	6PVM	20493	2023-07-10	2019-07-21	4.5	4.24	—	4.3	0.006	1.18	0.0	0.06	12.60	0.01	2.154	6.75	0.87	15.6	84.1	0.3	-6.13	0.49	0.74	—	4.3	0.003	0.88	0.0	0.04	13.70	0.00	2.121	13.51	0.00	13.6	86.1	0.3	-2.67	1.03	0.49	0.74	—	21006	2576	6	0	2	0	0	logfile
✔	6TQE	10549	2023-07-05	2019-12-16	4.3	4.14	—	4.2	0.007	1.04	0.0	0.06	14.59	0.01	2.077	2.78	0.76	8.6	91.4	0.0	-6.13	0.76	0.89	—	4.2	0.002	0.61	0.0	0.04	13.69	0.00	2.010	4.66	0.00	5.1	94.9	0.0	-2.69	1.28	0.75	0.88	—	10076	1268	4	0	4	0	0	logfile
✔	7FEQ	31560	2023-07-09	2021-07-21	3.2	3.55	—	3.6	0.010	1.20	0.0	0.07	14.49	0.01	2.172	1.94	0.19	12.9	86.6	0.6	-6.13	0.47	0.75	3.40	3.6	0.004	0.71	0.0	0.05	16.44	0.00	2.187	3.94	0.15	11.0	88.8	0.2	-3.56	1.02	0.68	0.88	2.64	19236	2520	14	0	0	0	0	logfile
✔	6N26	9324	2023-07-06	2018-11-12	3.0	3.29	—	3.2	0.008	0.83	0.0	0.05	9.20	0.01	2.277	2.55	0.00	3.2	96.8	0.0	-6.12	0.72	0.83	4.16	3.2	0.004	0.68	0.0	0.04	15.84	0.00	2.213	7.34	2.49	1.3	98.7	0.0	0.61	0.73	0.73	0.85	2.78	13190	1595	5	0	0	0	0	logfile
✔	6N25	9323	2023-07-07	2018-11-12	2.7	3.35	—	3.2	0.008	0.85	0.0	0.05	9.28	0.01	2.307	2.16	0.00	2.1	97.9	0.0	-6.12	0.77	0.88	4.62	3.2	0.002	0.53	0.0	0.04	14.60	0.00	2.193	5.51	1.70	2.0	98.0	0.0	1.13	3.82	0.67	0.84	2.93	13940	1690	10	0	5	0	0	logfile

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