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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7CH0 | 30367 | 2023-07-08 | 2020-07-03 | 3.7 | 3.78 | — | 3.8 | 0.008 | 1.11 | 0.0 | 0.06 | 16.08 | 0.01 | 1.910 | 4.94 | 6.24 | 10.7 | 89.0 | 0.2 | -6.21 | 0.64 | 0.83 | 2.02 | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 15.81 | 0.00 | 2.147 | 7.53 | 0.54 | 8.9 | 91.1 | 0.0 | -2.48 | 1.66 | 0.66 | 0.84 | 1.77 | 15856 | 2092 | 14 | 0 | 2 | 0 | 0 | logfile |
✔ | 7B00 | 11952 | 2023-07-04 | 2020-11-17 | 3.98 | 3.73 | — | 4.0 | 0.006 | 0.97 | 0.0 | 0.08 | 14.85 | 0.01 | 1.838 | 5.81 | 0.39 | 9.5 | 90.5 | 0.0 | -6.20 | 0.59 | 0.79 | 1.66 | 4.0 | 0.003 | 0.75 | 0.0 | 0.04 | 16.30 | 0.00 | 2.149 | 9.80 | 0.64 | 8.2 | 91.8 | 0.0 | -2.54 | 0.60 | 0.64 | 0.79 | 1.24 | 7389 | 926 | 7 | 0 | 9 | 0 | 0 | logfile |
✔ | 6LMX | 0923 | 2023-07-07 | 2019-12-26 | 3.4 | 3.53 | 3.23 | 3.5 | 0.019 | 1.32 | 0.0 | 0.07 | 15.24 | 0.01 | 2.161 | 4.67 | 1.26 | 2.1 | 97.9 | 0.0 | -6.20 | 0.60 | 0.78 | 2.56 | 3.5 | 0.003 | 0.69 | 0.0 | 0.04 | 15.78 | 0.01 | 2.133 | 7.69 | 0.42 | 2.8 | 97.2 | 0.0 | 2.19 | 1.54 | 0.65 | 0.82 | 1.17 | 15588 | 2160 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HDS | 34679 | 2023-07-03 | 2022-11-06 | 3.57 | 3.28 | 3.59 | 3.4 | 0.007 | 1.11 | 0.0 | 0.06 | 10.70 | 0.01 | 2.312 | 4.13 | 0.63 | 10.9 | 89.1 | 0.0 | -6.20 | 0.55 | 0.77 | 2.49 | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 16.09 | 0.00 | 2.083 | 10.70 | 0.96 | 9.7 | 90.3 | 0.0 | -2.59 | 1.26 | 0.56 | 0.78 | 1.67 | 53532 | 6864 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GoE | 34176 | 2023-07-03 | 2022-08-24 | 3.0 | 3.01 | 3.02 | 3.1 | 0.006 | 0.76 | 1.0 | 0.05 | 12.65 | 0.01 | 2.273 | 6.40 | 0.57 | 2.0 | 98.0 | 0.0 | -6.19 | 0.46 | 0.82 | 4.16 | 3.1 | 0.003 | 0.63 | 1.0 | 0.04 | 14.15 | 0.00 | 2.175 | 7.73 | 1.70 | 2.5 | 97.5 | 0.0 | 0.94 | 0.42 | 0.45 | 0.83 | 3.08 | 3323 | 407 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6JBJ | 9791 | 2023-07-05 | 2019-01-25 | 3.6 | 3.75 | — | 3.7 | 0.008 | 1.04 | 0.0 | 0.06 | 16.15 | 0.01 | 2.206 | 10.64 | 0.00 | 9.1 | 90.9 | 0.0 | -6.19 | 0.65 | 0.83 | 2.03 | 3.7 | 0.004 | 0.77 | 0.0 | 0.04 | 18.34 | 0.00 | 2.084 | 18.07 | 0.59 | 8.7 | 91.3 | 0.0 | -2.08 | 0.61 | 0.65 | 0.82 | 1.17 | 9166 | 1130 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6LYP | 30017 | 2023-07-07 | 2020-02-15 | 3.3 | 3.12 | 3.20 | 3.5 | 0.011 | 1.35 | 0.0 | 0.08 | 11.79 | 0.01 | 2.148 | 8.25 | 1.40 | 9.8 | 90.2 | 0.0 | -6.19 | 0.50 | 0.70 | 2.83 | 3.5 | 0.005 | 0.78 | 0.0 | 0.05 | 14.72 | 0.00 | 2.225 | 12.51 | 0.43 | 9.8 | 90.2 | 0.0 | -3.23 | 1.21 | 0.54 | 0.74 | 2.12 | 15169 | 2009 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 6LYU | 30018 | 2023-07-06 | 2020-02-15 | 4.2 | 4.46 | — | 4.2 | 0.009 | 1.16 | 6.0 | 0.06 | 15.38 | 0.01 | 1.986 | 57.04 | 1.18 | 23.1 | 76.2 | 0.7 | -6.16 | 0.86 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11118 | 1430 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 8GWN | 34317 | 2023-07-10 | 2022-09-17 | 3.38 | 3.97 | 3.47 | 3.7 | 0.015 | 1.23 | 0.0 | 0.06 | 18.41 | 0.01 | 1.979 | 38.61 | 14.07 | 23.5 | 75.0 | 1.5 | -6.16 | 0.86 | 0.83 | 1.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21860 | 2655 | 12 | 52 | 9 | 0 | 0 | logfile |
✔ | 6JNF | 9851 | 2023-07-04 | 2019-03-14 | 3.81 | 3.96 | 3.73 | 4.0 | 0.009 | 1.23 | 0.0 | 0.06 | 17.14 | 0.01 | 2.304 | 5.24 | 1.02 | 16.7 | 83.3 | 0.0 | -6.16 | 0.64 | 0.82 | 1.38 | 4.0 | 0.003 | 0.91 | 0.0 | 0.05 | 17.91 | 0.00 | 2.133 | 11.24 | 0.64 | 10.5 | 89.5 | 0.0 | -2.83 | 1.47 | 0.67 | 0.82 | 1.30 | 7271 | 924 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 7DGZ | 30676 | 2023-07-05 | 2020-11-12 | 3.8 | 4.12 | — | 4.0 | 0.008 | 1.43 | 3.0 | 0.07 | 12.24 | 0.01 | 1.238 | 9.03 | 1.31 | 17.6 | 80.9 | 1.5 | -6.15 | 0.80 | 0.71 | 1.44 | 3.9 | 0.003 | 0.87 | 0.0 | 0.04 | 14.39 | 0.01 | 2.084 | 11.40 | 0.37 | 14.7 | 85.1 | 0.3 | -3.35 | 1.61 | 0.82 | 0.73 | 0.56 | 60921 | 7992 | 61 | 0 | 21 | 0 | 0 | logfile |
✔ | 6VX5 | 21430 | 2023-07-06 | 2020-02-21 | 3.03 | 3.58 | — | 3.5 | 0.006 | 0.80 | 0.0 | 0.05 | 14.27 | 0.00 | 2.348 | 4.97 | 0.00 | 3.3 | 96.7 | 0.0 | -6.15 | 0.72 | 0.84 | 2.92 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 16.41 | 0.00 | 2.259 | 9.26 | 0.50 | 1.6 | 98.4 | 0.0 | -0.38 | 1.27 | 0.67 | 0.80 | 2.34 | 13056 | 1575 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7K4D | 22665 | 2023-07-09 | 2020-09-15 | 3.66 | 4.18 | — | 4.3 | 0.010 | 1.22 | 0.0 | 0.06 | 12.05 | 0.01 | 2.205 | 3.98 | 0.38 | 9.1 | 90.9 | 0.0 | -6.15 | 0.51 | 0.74 | 2.06 | 4.3 | 0.003 | 0.75 | 0.0 | 0.04 | 16.29 | 0.00 | 2.129 | 9.75 | 0.56 | 6.6 | 93.4 | 0.0 | -1.56 | 0.86 | 0.54 | 0.76 | 1.33 | 19801 | 2448 | 8 | 0 | 7 | 0 | 0 | logfile |
✔ | 5L4K | 4002 | 2023-07-13 | 2016-05-25 | 3.9 | 4.00 | — | 4.2 | 0.007 | 0.85 | 3.0 | 0.05 | 16.12 | 0.01 | 1.808 | 5.03 | 3.82 | 11.8 | 85.0 | 3.2 | -6.15 | 0.34 | 0.64 | 0.39 | 4.0 | 0.004 | 0.79 | 0.0 | 0.04 | 17.43 | 0.01 | 1.906 | 18.52 | 0.60 | 9.2 | 90.4 | 0.5 | -1.87 | 1.81 | 0.37 | 0.70 | 0.35 | 79649 | 5000 | 12 | 0 | 0 | 0 | 39990 | logfile |
✔ | 6M4G | 30077 | 2023-07-05 | 2020-03-06 | 2.8 | 3.16 | — | 3.1 | 0.006 | 0.93 | 0.0 | 0.06 | 25.71 | 0.01 | 2.169 | 14.42 | 2.14 | 2.8 | 97.2 | 0.0 | -6.14 | 0.60 | 0.74 | 3.05 | 3.1 | 0.004 | 0.67 | 0.0 | 0.04 | 28.39 | 0.00 | 2.180 | 10.30 | 1.07 | 1.6 | 98.4 | 0.0 | 1.26 | 1.29 | 0.61 | 0.81 | 2.64 | 9010 | 656 | 10 | 186 | 0 | 0 | 0 | logfile |
✔ | 6PVM | 20493 | 2023-07-10 | 2019-07-21 | 4.5 | 4.24 | — | 4.3 | 0.006 | 1.18 | 0.0 | 0.06 | 12.60 | 0.01 | 2.154 | 6.75 | 0.87 | 15.6 | 84.1 | 0.3 | -6.13 | 0.49 | 0.74 | — | 4.3 | 0.003 | 0.88 | 0.0 | 0.04 | 13.70 | 0.00 | 2.121 | 13.51 | 0.00 | 13.6 | 86.1 | 0.3 | -2.67 | 1.03 | 0.49 | 0.74 | — | 21006 | 2576 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6TQE | 10549 | 2023-07-05 | 2019-12-16 | 4.3 | 4.14 | — | 4.2 | 0.007 | 1.04 | 0.0 | 0.06 | 14.59 | 0.01 | 2.077 | 2.78 | 0.76 | 8.6 | 91.4 | 0.0 | -6.13 | 0.76 | 0.89 | — | 4.2 | 0.002 | 0.61 | 0.0 | 0.04 | 13.69 | 0.00 | 2.010 | 4.66 | 0.00 | 5.1 | 94.9 | 0.0 | -2.69 | 1.28 | 0.75 | 0.88 | — | 10076 | 1268 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7FEQ | 31560 | 2023-07-09 | 2021-07-21 | 3.2 | 3.55 | — | 3.6 | 0.010 | 1.20 | 0.0 | 0.07 | 14.49 | 0.01 | 2.172 | 1.94 | 0.19 | 12.9 | 86.6 | 0.6 | -6.13 | 0.47 | 0.75 | 3.40 | 3.6 | 0.004 | 0.71 | 0.0 | 0.05 | 16.44 | 0.00 | 2.187 | 3.94 | 0.15 | 11.0 | 88.8 | 0.2 | -3.56 | 1.02 | 0.68 | 0.88 | 2.64 | 19236 | 2520 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N26 | 9324 | 2023-07-06 | 2018-11-12 | 3.0 | 3.29 | — | 3.2 | 0.008 | 0.83 | 0.0 | 0.05 | 9.20 | 0.01 | 2.277 | 2.55 | 0.00 | 3.2 | 96.8 | 0.0 | -6.12 | 0.72 | 0.83 | 4.16 | 3.2 | 0.004 | 0.68 | 0.0 | 0.04 | 15.84 | 0.00 | 2.213 | 7.34 | 2.49 | 1.3 | 98.7 | 0.0 | 0.61 | 0.73 | 0.73 | 0.85 | 2.78 | 13190 | 1595 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N25 | 9323 | 2023-07-07 | 2018-11-12 | 2.7 | 3.35 | — | 3.2 | 0.008 | 0.85 | 0.0 | 0.05 | 9.28 | 0.01 | 2.307 | 2.16 | 0.00 | 2.1 | 97.9 | 0.0 | -6.12 | 0.77 | 0.88 | 4.62 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 14.60 | 0.00 | 2.193 | 5.51 | 1.70 | 2.0 | 98.0 | 0.0 | 1.13 | 3.82 | 0.67 | 0.84 | 2.93 | 13940 | 1690 | 10 | 0 | 5 | 0 | 0 | logfile |