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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6N1i | 8903 | 2024-01-19 | 2018-11-08 | 3.58 | 3.63 | — | 3.6 | 0.009 | 1.13 | 0.0 | 0.06 | 9.87 | 0.01 | 1.147 | 27.10 | 0.00 | 2.4 | 97.6 | 0.0 | -6.04 | 0.42 | 0.58 | 0.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11136 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8HiJ | 34818 | 2024-01-18 | 2022-11-20 | 3.54 | 2.56 | 3.51 | 3.0 | 0.004 | 0.72 | 1.0 | 0.05 | 9.92 | 0.01 | 2.315 | 3.83 | 0.00 | 5.2 | 94.8 | 0.0 | -3.81 | 0.69 | 0.69 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8245 | 1055 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7X6Q | 33025 | 2024-01-19 | 2022-03-08 | 4.5 | 4.41 | 4.61 | 4.3 | 0.009 | 0.73 | 0.0 | 0.06 | 9.96 | 0.00 | 2.197 | 0.93 | 0.01 | 3.2 | 96.7 | 0.2 | -0.87 | 0.78 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64472 | 8440 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FGX | 29077 | 2024-01-19 | 2022-12-13 | 2.62 | 3.60 | 2.58 | 3.0 | 0.003 | 0.45 | 0.0 | 0.04 | 9.99 | 0.00 | 2.400 | 1.82 | 0.00 | 1.6 | 98.4 | 0.0 | 1.41 | 0.90 | 0.88 | 4.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9899 | 645 | 4 | 0 | 3 | 0 | 4873 | logfile |
✘ | 5X1G | 6701 | 2024-01-17 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7MSX | 23971 | 2024-01-17 | 2021-05-12 | 3.15 | 3.24 | 3.04 | 3.2 | 0.008 | 0.62 | 0.0 | 0.05 | 10.30 | 0.00 | 2.385 | 0.81 | 0.00 | 1.9 | 98.1 | 0.0 | 0.06 | 0.77 | 0.85 | 3.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3706 | 473 | 1 | 0 | 3 | 0 | 0 | logfile |
✘ | 6DNH | 7112 | 2024-01-20 | 2018-06-06 | 3.4 | 3.52 | — | 3.5 | 0.010 | 1.08 | 1.0 | 0.06 | 10.60 | 0.01 | 1.258 | 10.88 | 1.10 | 8.5 | 91.2 | 0.3 | -4.04 | 0.78 | 0.80 | 3.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13442 | 1670 | 5 | 7 | 3 | 0 | 0 | logfile |
✘ | 6iJZ | 9682 | 2024-01-19 | 2018-10-12 | 3.68 | 3.76 | — | 3.7 | 0.008 | 1.11 | 0.0 | 0.06 | 10.64 | 0.01 | 2.000 | 4.54 | 0.69 | 10.9 | 88.8 | 0.3 | -5.03 | 0.57 | 0.80 | 2.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10964 | 1366 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YUH | 34107 | 2024-01-19 | 2022-08-17 | 3.7 | 3.99 | 3.78 | 3.8 | 0.010 | 1.18 | 0.0 | 0.07 | 10.78 | 0.01 | 2.253 | 6.61 | 0.15 | 10.9 | 88.9 | 0.1 | -4.68 | 0.80 | 0.77 | 1.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12432 | 1596 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 3J8H | 2807 | 2024-01-18 | 2014-10-26 | 3.8 | 3.95 | — | 3.8 | 0.006 | 1.31 | 4.0 | 0.05 | 10.89 | 0.01 | 1.488 | 33.49 | 2.47 | 5.3 | 92.8 | 1.9 | -2.06 | 0.65 | 0.64 | 1.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111160 | 12796 | 12 | 0 | 2276 | 0 | 0 | logfile |
✘ | 6VFi | 21173 | 2024-01-18 | 2020-01-05 | 4.54 | 4.63 | 4.96 | 4.5 | 0.018 | 1.47 | 0.0 | 0.09 | 10.93 | 0.01 | 2.449 | 0.53 | 0.00 | 1.3 | 98.7 | 0.0 | 1.21 | 0.80 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 58488 | 7560 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 6YW6 | 10959 | 2024-01-20 | 2020-04-29 | 4.2 | 4.50 | — | 4.3 | 0.007 | 1.15 | 2.0 | 0.07 | 11.08 | 0.01 | 2.164 | 11.25 | 0.73 | 6.2 | 93.5 | 0.3 | -4.53 | 0.85 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13823 | 1722 | 9 | 0 | 2 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2024-01-20 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 11.10 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 7WSF | 32756 | 2024-01-20 | 2022-01-29 | 2.87 | 3.08 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.04 | 11.23 | 0.00 | 2.016 | 6.14 | 3.87 | 2.7 | 97.3 | 0.0 | -0.12 | 0.72 | 0.81 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7170 | 879 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 5GKZ | 9519 | 2024-01-18 | 2016-07-07 | 4.0 | 4.10 | — | 4.0 | 0.019 | 1.71 | 36.0 | 0.11 | 11.29 | 0.01 | 1.755 | 15.04 | 0.51 | 6.5 | 91.2 | 2.3 | -2.89 | 0.72 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111000 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 5GKY | 9518 | 2024-01-18 | 2016-07-07 | 3.8 | 4.18 | — | 4.0 | 0.017 | 1.70 | 19.0 | 0.10 | 11.29 | 0.01 | 1.789 | 19.04 | 0.51 | 5.8 | 91.8 | 2.5 | -2.71 | 0.73 | 0.79 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111036 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 5GL0 | 9520 | 2024-01-18 | 2016-07-07 | 4.2 | 4.40 | — | 4.2 | 0.018 | 1.72 | 17.0 | 0.10 | 11.34 | 0.01 | 1.957 | 21.25 | 0.51 | 6.5 | 90.6 | 2.9 | -2.58 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111000 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 6JH6 | 9825 | 2024-01-17 | 2019-02-17 | 4.8 | 5.31 | — | 4.8 | 0.006 | 1.07 | 1.0 | 0.05 | 11.44 | 0.01 | 2.197 | 12.11 | 0.58 | 10.8 | 88.9 | 0.3 | -4.03 | 0.79 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108924 | 14244 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 7WPo | 32686 | 2024-01-17 | 2022-01-24 | 3.5 | 3.78 | — | 3.7 | 0.014 | 1.64 | 6.0 | 0.11 | 11.46 | 0.01 | 2.359 | 5.22 | 0.48 | 2.6 | 97.3 | 0.1 | -0.13 | 0.70 | 0.79 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6829 | 867 | 8 | 0 | 17 | 0 | 0 | logfile |
✘ | 6TM2 | 10517 | 2024-01-18 | 2019-12-03 | 2.95 | 3.12 | — | 3.1 | 0.008 | 1.01 | 0.0 | 0.06 | 11.48 | 0.01 | 2.181 | 3.02 | 0.10 | 11.3 | 88.7 | 0.0 | -4.14 | 0.44 | 0.47 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55254 | 7230 | 60 | 0 | 54 | 138 | 0 | logfile |