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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7NFD | 12300 | 2024-01-19 | 2021-02-06 | 3.51 | 3.83 | — | 3.8 | 0.009 | 1.02 | 1.0 | 0.05 | 16.11 | 0.00 | 2.071 | 25.27 | 0.37 | 15.9 | 84.0 | 0.1 | -5.50 | 0.62 | 0.81 | 2.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12394 | 1582 | 9 | 0 | 5 | 0 | 0 | logfile |
✘ | 6o2P | 0611 | 2024-01-18 | 2019-02-24 | 3.3 | 3.80 | — | 3.8 | 0.014 | 1.83 | 0.0 | 0.64 | 22.92 | 0.00 | 1.908 | 0.66 | 1.16 | 4.5 | 95.5 | 0.0 | -3.17 | 0.51 | 0.72 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9767 | 1179 | 3 | 0 | 29 | 0 | 0 | logfile |
✘ | 7KJX | 22901 | 2024-01-18 | 2020-10-26 | 3.1 | 3.33 | — | 3.3 | 0.005 | 0.69 | 0.0 | 0.04 | 16.90 | 0.01 | 2.100 | 5.38 | 0.12 | 2.3 | 97.7 | 0.0 | 0.94 | 0.71 | 0.81 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8589 | 948 | 5 | 44 | 2 | 0 | 0 | logfile |
✘ | 6PUZ | 20485 | 2024-01-19 | 2019-07-18 | 2.8 | 3.10 | 2.87 | 3.1 | 0.008 | 0.86 | 0.0 | 0.05 | 19.79 | 0.01 | 0.000 | 5.85 | 0.19 | 2.2 | 97.8 | 0.0 | -2.67 | 0.74 | 0.89 | 4.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11702 | 1230 | 28 | 72 | 10 | 340 | 0 | logfile |
✘ | 7F62 | 31470 | 2024-01-17 | 2021-06-24 | 3.6 | 4.33 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 13.21 | 0.00 | 1.925 | 19.73 | 1.38 | 8.1 | 91.6 | 0.2 | -2.76 | 0.66 | 0.62 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3321 | 427 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7FD8 | 31536 | 2024-01-19 | 2021-07-16 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12152 | 1528 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 7oZ1 | 13118 | 2024-01-18 | 2021-06-25 | 4.0 | 3.41 | — | 4.0 | 0.006 | 0.92 | 0.0 | 0.05 | 16.76 | 0.00 | 2.109 | 14.20 | 0.21 | 7.6 | 92.4 | 0.0 | -3.23 | 0.61 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8942 | 1088 | 4 | 0 | 12 | 0 | 0 | logfile |
✘ | 6PUY | 20484 | 2024-01-19 | 2019-07-18 | 2.8 | 3.15 | 2.88 | 3.1 | 0.015 | 0.90 | 0.0 | 0.06 | 19.87 | 0.01 | 0.000 | 4.36 | 0.19 | 3.0 | 97.0 | 0.0 | -3.07 | 0.75 | 0.90 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11784 | 1232 | 28 | 72 | 10 | 404 | 0 | logfile |
✘ | 7UNC | 26620 | 2024-01-17 | 2022-04-10 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105726 | 7924 | 38 | 311 | 9 | 0 | 48096 | logfile |
✘ | 7JN3 | 22400 | 2024-01-20 | 2020-08-03 | 3.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15666 | 1807 | 14 | 68 | 8 | 0 | 0 | logfile |
✘ | 6JiY | 9837 | 2024-01-19 | 2019-02-24 | 3.9 | 4.05 | — | 3.9 | 0.008 | 1.06 | 1.0 | 0.05 | 15.54 | 0.01 | 2.203 | 7.76 | 0.47 | 12.2 | 87.5 | 0.2 | -5.76 | 0.73 | 0.78 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115288 | 15056 | 20 | 0 | 32 | 0 | 0 | logfile |
✘ | 5A7U | 3079 | 2024-01-17 | 2015-07-10 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 455 | 27 | 1 | 0 | 1 | 0 | 231 | logfile |
✘ | 6JV2 | 9889 | 2024-01-18 | 2019-04-15 | 4.4 | 5.59 | — | 4.4 | 0.011 | 1.30 | 1.0 | 0.06 | 16.74 | 0.01 | 2.116 | 19.38 | 1.92 | 13.3 | 86.5 | 0.3 | -4.61 | 0.83 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111080 | 14564 | 16 | 0 | 24 | 0 | 0 | logfile |
✘ | 6JHN | 9826 | 2024-01-18 | 2019-02-18 | 4.5 | 7.49 | — | 4.4 | 0.010 | 1.23 | 0.0 | 0.06 | 16.52 | 0.01 | 2.114 | 19.26 | 1.44 | 13.9 | 85.8 | 0.3 | -4.27 | 0.85 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109488 | 14332 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 7SPB | 24769 | 2024-01-18 | 2021-11-02 | 3.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6JiU | 9836 | 2024-01-18 | 2019-02-23 | 4.2 | 4.52 | — | 4.2 | 0.006 | 1.01 | 9.0 | 0.05 | 15.69 | 0.01 | 2.218 | 10.69 | 0.51 | 10.3 | 89.5 | 0.2 | -5.44 | 0.78 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112212 | 14684 | 20 | 0 | 24 | 0 | 0 | logfile |
✘ | 7L20 | 23121 | 2024-01-18 | 2020-12-15 | 3.15 | 3.39 | — | 3.4 | 0.007 | 0.87 | 0.0 | 0.05 | 19.41 | 0.01 | 0.505 | 10.97 | 0.84 | 7.3 | 92.2 | 0.5 | -3.38 | 0.69 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110234 | 9454 | 67 | 1583 | 171 | 0 | 0 | logfile |
✘ | 6Jii | 9834 | 2024-01-19 | 2019-02-21 | 4.2 | 4.38 | — | 4.1 | 0.008 | 1.12 | 0.0 | 0.06 | 11.51 | 0.01 | 2.208 | 7.63 | 0.57 | 11.2 | 88.4 | 0.4 | -4.07 | 0.78 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115028 | 15012 | 16 | 0 | 16 | 0 | 0 | logfile |
✘ | 7WSF | 32756 | 2024-01-20 | 2022-01-29 | 2.87 | 3.08 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.04 | 11.23 | 0.00 | 2.016 | 6.14 | 3.87 | 2.7 | 97.3 | 0.0 | -0.12 | 0.72 | 0.81 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7170 | 879 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 3J8H | 2807 | 2024-01-18 | 2014-10-26 | 3.8 | 3.95 | — | 3.8 | 0.006 | 1.31 | 4.0 | 0.05 | 10.89 | 0.01 | 1.488 | 33.49 | 2.47 | 5.3 | 92.8 | 1.9 | -2.06 | 0.65 | 0.64 | 1.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111160 | 12796 | 12 | 0 | 2276 | 0 | 0 | logfile |