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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8SL0 | 40570 | 2023-12-07 | 2023-04-20 | 3.3 | 4.17 | 3.09 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 16.00 | 0.00 | 2.201 | 7.96 | 0.00 | 8.4 | 91.2 | 0.4 | -1.67 | 0.42 | 0.83 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1737 | 228 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Co7 | 7542 | 2023-12-16 | 2018-03-12 | 3.07 | 3.22 | — | 3.3 | 0.011 | 1.39 | 0.0 | 0.06 | 14.01 | 0.01 | 2.070 | 1.58 | 0.33 | 5.6 | 94.3 | 0.1 | -2.00 | 0.42 | 0.51 | 3.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35255 | 4244 | 12 | 0 | 75 | 0 | 0 | logfile |
✘ | 8CE7 | 16600 | 2023-12-09 | 2023-02-01 | 2.7 | 2.34 | 2.46 | 2.7 | 0.010 | 1.47 | 12.0 | 0.09 | 13.19 | 0.01 | 0.000 | 16.71 | 3.33 | 9.0 | 91.0 | 0.0 | -3.63 | 0.44 | 0.73 | 6.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10512 | 1512 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 7X7T | 33047 | 2023-12-08 | 2022-03-10 | 3.48 | 3.70 | — | 3.7 | 0.007 | 1.04 | 3.0 | 0.06 | 13.41 | 0.01 | 2.174 | 8.12 | 0.14 | 6.0 | 93.9 | 0.1 | -4.53 | 0.44 | 0.61 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6815 | 871 | 8 | 0 | 1 | 0 | 0 | logfile |
✘ | 6TM2 | 10517 | 2023-12-08 | 2019-12-03 | 2.95 | 3.12 | — | 3.1 | 0.008 | 1.01 | 0.0 | 0.06 | 11.48 | 0.01 | 2.181 | 3.02 | 0.10 | 11.3 | 88.7 | 0.0 | -4.14 | 0.44 | 0.47 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55254 | 7230 | 60 | 0 | 54 | 138 | 0 | logfile |
✘ | 8DQ1 | 27646 | 2023-12-12 | 2022-07-18 | 4.1 | 3.85 | 3.29 | 3.9 | 0.011 | 1.10 | 3.0 | 0.06 | 19.21 | 0.01 | 2.082 | 14.69 | 0.87 | 5.7 | 94.3 | 0.0 | -1.40 | 0.44 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17754 | 1075 | 8 | 36 | 2 | 0 | 8343 | logfile |
✘ | 8GKG | 40183 | 2023-12-11 | 2023-03-18 | 4.38 | 3.94 | 4.39 | 4.9 | 0.002 | 0.54 | 0.0 | 0.04 | 12.43 | 0.00 | 2.293 | 5.72 | 0.00 | 16.3 | 83.5 | 0.2 | -2.00 | 0.45 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17160 | 2700 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 5XJC | 6721 | 2023-12-09 | 2017-04-30 | 3.6 | 3.69 | 3.82 | 3.6 | 0.013 | 1.58 | 25.0 | 0.10 | 17.69 | 0.01 | 1.113 | 24.22 | 8.13 | 4.9 | 93.3 | 1.8 | -1.84 | 0.46 | 0.53 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 116421 | 14184 | 59 | 405 | 24 | 0 | 0 | logfile |
✘ | 5WSG | 6684 | 2023-12-13 | 2016-12-07 | 4.0 | 4.08 | — | 4.0 | 0.015 | 1.47 | 46.0 | 0.08 | 16.18 | 0.01 | 1.580 | 27.87 | 1.96 | 12.5 | 85.9 | 1.6 | -4.87 | 0.46 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76730 | 8620 | 51 | 376 | 883 | 0 | 0 | logfile |
✘ | 8BQW | 16189 | 2023-12-11 | 2023-01-18 | 2.3 | 2.12 | 2.14 | 2.2 | 0.008 | 1.14 | 0.0 | 0.07 | 8.96 | 0.00 | 0.052 | 12.77 | 0.00 | 9.6 | 90.4 | 0.0 | -3.78 | 0.46 | 0.75 | 7.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17385 | 2310 | 90 | 0 | 270 | 135 | 0 | logfile |
✘ | 5GMK | 9525 | 2023-12-13 | 2016-07-14 | 3.4 | 3.52 | — | 3.5 | 0.012 | 1.25 | 16.0 | 0.07 | 15.51 | 0.01 | 1.378 | 19.35 | 2.77 | 7.7 | 91.2 | 1.0 | -3.71 | 0.47 | 0.53 | 1.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75273 | 8026 | 51 | 404 | 981 | 0 | 0 | logfile |
✘ | 6oo4 | 20145 | 2023-12-11 | 2019-04-22 | 3.3 | 3.45 | 3.23 | 3.5 | 0.013 | 1.10 | 0.0 | 0.06 | 10.41 | 0.01 | 1.858 | 2.96 | 0.00 | 3.4 | 96.6 | 0.0 | -2.86 | 0.47 | 0.64 | 4.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18452 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 8iV5 | 35741 | 2023-12-07 | 2023-03-26 | 3.77 | 3.99 | 3.73 | 4.0 | 0.007 | 0.88 | 0.0 | 0.06 | 13.87 | 0.01 | 2.297 | 5.11 | 0.91 | 7.9 | 92.1 | 0.0 | -3.73 | 0.48 | 0.70 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5096 | 645 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 8DCX | 27330 | 2023-12-09 | 2022-06-17 | 2.8 | 3.32 | 3.33 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 14.71 | 0.00 | 2.195 | 13.47 | 0.00 | 5.4 | 94.6 | 0.1 | -0.04 | 0.48 | 0.60 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9627 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6BNP | 7116 | 2023-12-08 | 2017-11-17 | 4.6 | 4.61 | 3.78 | 4.4 | 0.015 | 2.10 | 24.0 | 0.11 | 16.18 | 0.02 | 1.814 | 0.55 | 1.80 | 8.3 | 90.3 | 1.3 | -3.94 | 0.48 | 0.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56792 | 7160 | 22 | 0 | 16 | 0 | 0 | logfile |
✘ | 8DJK | 27460 | 2023-12-08 | 2022-06-30 | 3.33 | 3.77 | 3.32 | 3.7 | 0.029 | 1.52 | 1.0 | 1.03 | 32.03 | 0.01 | 1.327 | 7.25 | 0.82 | 5.0 | 95.0 | 0.0 | -1.84 | 0.48 | 0.73 | 2.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7091 | 870 | 7 | 0 | 8 | 0 | 0 | logfile |
✘ | 8JPF | 36478 | 2023-12-07 | 2023-06-11 | 3.02 | 3.21 | 3.41 | 3.3 | 0.006 | 1.76 | 0.0 | 0.27 | 15.61 | 0.00 | 2.214 | 5.45 | 0.46 | 2.7 | 97.3 | 0.0 | 2.25 | 0.48 | 0.75 | 2.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2269 | 304 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 6X80 | 22088 | 2023-12-16 | 2020-06-01 | 3.5 | 3.69 | — | 3.5 | 0.006 | 0.64 | 0.0 | 0.81 | 29.60 | 0.00 | 1.310 | 8.52 | 0.01 | 8.5 | 91.3 | 0.2 | -2.33 | 0.48 | 0.90 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97482 | 12628 | 44 | 0 | 374 | 0 | 0 | logfile |
✘ | 8A01 | 15044 | 2023-12-07 | 2022-05-26 | 3.2 | 3.25 | 3.20 | 3.2 | 0.002 | 0.44 | 0.0 | 0.05 | 14.81 | 0.00 | 2.289 | 4.13 | 0.00 | 2.0 | 98.0 | 0.0 | 0.02 | 0.48 | 0.86 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5511 | 717 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8DJM | 27461 | 2023-12-08 | 2022-07-01 | 3.23 | 3.66 | 3.31 | 3.6 | 0.029 | 1.53 | 2.0 | 1.04 | 32.65 | 0.00 | 1.844 | 8.23 | 0.82 | 3.7 | 96.3 | 0.0 | -2.26 | 0.49 | 0.75 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7032 | 862 | 7 | 0 | 8 | 0 | 0 | logfile |