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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5GAK | 3227 | 2023-08-17 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 20.85 | 0.01 | 0.816 | 23.89 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 3.9 | 0.003 | 0.72 | 0.0 | 0.04 | 18.78 | 0.00 | 2.007 | 19.48 | 0.38 | 8.0 | 91.6 | 0.4 | -2.15 | 1.90 | 0.32 | 0.21 | 0.08 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |
✔ | 8FD5 | 29002 | 2023-08-09 | 2022-12-02 | 4.57 | 4.19 | — | 10.0 | 0.016 | 2.15 | 4.0 | 0.13 | 13.14 | 0.02 | 2.541 | 0.16 | 0.29 | 3.8 | 96.2 | 0.0 | -1.38 | 0.28 | 0.02 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.04 | 13.27 | 0.01 | 2.112 | 15.37 | 0.00 | 6.2 | 93.8 | 0.0 | -1.75 | 1.59 | 0.40 | 0.17 | — | 3214 | 419 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EU3 | 3958 | 2023-08-24 | 2017-10-27 | 3.3 | 3.38 | — | 6.0 | 0.004 | 1.06 | 0.0 | 0.06 | 11.41 | 0.01 | 1.167 | 5.05 | 0.26 | 12.9 | 86.6 | 0.5 | -5.18 | 0.23 | 0.03 | 0.17 | 3.3 | 0.004 | 0.90 | 0.0 | 0.05 | 15.36 | 0.01 | 1.885 | 14.85 | 0.75 | 12.5 | 87.1 | 0.3 | -2.67 | 1.67 | 0.59 | 0.57 | 0.56 | 38330 | 4825 | 22 | 0 | 7 | 0 | 0 | logfile |
✔ | 6REU | 4857 | 2023-08-22 | 2019-04-12 | 4.2 | 4.32 | 4.74 | 30.0 | 0.006 | 0.99 | 0.0 | 0.06 | 15.07 | 0.01 | 1.681 | 9.40 | 0.42 | 5.7 | 94.1 | 0.1 | -4.88 | 0.21 | 0.03 | — | 30.0 | 0.004 | 0.83 | 0.0 | 0.05 | 14.03 | 0.01 | 1.829 | 21.34 | 0.06 | 6.8 | 93.0 | 0.1 | -1.87 | 1.53 | 0.26 | 0.19 | — | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2023-08-15 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 11.91 | 0.01 | 0.901 | 4.89 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.1 | 0.003 | 0.71 | 0.0 | 0.04 | 14.35 | 0.00 | 2.124 | 12.51 | 0.36 | 5.1 | 94.9 | 0.0 | -0.25 | 1.55 | 0.28 | 0.16 | 0.60 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 5VZL | 8749 | 2023-08-13 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 14.28 | 0.01 | 2.216 | 7.72 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.002 | 0.64 | 0.0 | 0.04 | 15.49 | 0.00 | 1.241 | 12.10 | 0.08 | 5.0 | 95.0 | 0.0 | -1.15 | 1.21 | 0.38 | 0.18 | 0.61 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 6EU2 | 3957 | 2023-08-24 | 2017-10-27 | 3.4 | 3.45 | — | 6.0 | 0.004 | 1.04 | 0.0 | 0.06 | 11.35 | 0.01 | 1.787 | 5.04 | 0.40 | 13.0 | 86.5 | 0.5 | -5.22 | 0.27 | 0.04 | 0.18 | 3.4 | 0.005 | 0.98 | 0.0 | 0.05 | 15.83 | 0.01 | 1.911 | 17.57 | 0.56 | 13.5 | 86.2 | 0.4 | -3.09 | 1.79 | 0.67 | 0.66 | 0.67 | 38329 | 4825 | 22 | 0 | 7 | 0 | 0 | logfile |
✔ | 7RTM | 24683 | 2023-08-11 | 2021-08-13 | 3.4 | 3.54 | 3.61 | 20.0 | 0.031 | 3.05 | 44.0 | 0.18 | 14.10 | 0.03 | 1.051 | 1.40 | 2.80 | 6.8 | 93.0 | 0.3 | -1.12 | 0.10 | 0.04 | 0.21 | 3.4 | 0.003 | 0.82 | 0.0 | 0.04 | 15.77 | 0.00 | 2.133 | 12.74 | 0.20 | 5.5 | 94.4 | 0.1 | 0.19 | 4.57 | 0.66 | 0.78 | 1.49 | 9161 | 1142 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 3JCD | 6549 | 2023-08-31 | 2015-12-01 | 3.7 | 5.07 | — | 19.0 | 0.006 | 0.83 | 0.0 | 0.04 | 14.69 | 0.00 | 1.289 | 14.63 | 0.02 | 9.6 | 85.8 | 4.5 | -2.43 | 0.34 | 0.04 | 0.30 | 3.4 | 0.005 | 1.16 | 0.0 | 0.06 | 20.49 | 0.01 | 1.400 | 48.65 | 0.88 | 15.2 | 83.4 | 1.3 | -4.28 | 2.51 | 0.71 | 0.42 | 0.16 | 147815 | 5982 | 57 | 4715 | 0 | 0 | 0 | logfile |
✔ | 5M6S | 3451 | 2023-08-09 | 2016-10-25 | 4.8 | 5.27 | — | 6.5 | 0.005 | 0.84 | 0.0 | 0.04 | 27.97 | 0.00 | 2.447 | 23.24 | 44.05 | 7.3 | 89.6 | 3.1 | -5.37 | 0.01 | 0.04 | — | 5.6 | 0.003 | 0.63 | 0.0 | 0.03 | 18.81 | 0.00 | 1.995 | 10.68 | 0.00 | 6.2 | 93.8 | 0.0 | 2.64 | 2.46 | 0.03 | 0.08 | — | 1593 | 98 | 1 | 0 | 0 | 0 | 793 | logfile |
✔ | 7V66 | 31736 | 2023-08-22 | 2021-08-19 | 1.89 | 1.85 | — | 5.2 | 0.006 | 1.02 | 0.0 | 0.07 | 12.14 | 0.01 | 1.929 | 1.89 | 2.07 | 1.9 | 98.0 | 0.0 | 1.97 | 0.09 | 0.05 | 1.38 | 5.1 | 0.004 | 0.76 | 0.0 | 0.04 | 15.44 | 0.00 | 2.197 | 20.43 | 1.35 | 4.9 | 95.1 | 0.0 | 2.55 | 1.19 | 0.16 | 0.14 | -0.14 | 33216 | 4128 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PC2 | 13316 | 2023-08-19 | 2021-08-03 | 2.8 | 3.39 | — | 6.5 | 0.033 | 1.66 | 5.0 | 0.06 | 15.68 | 0.01 | 1.809 | 9.01 | 1.49 | 7.8 | 92.2 | 0.0 | -3.81 | 0.43 | 0.05 | -0.14 | 3.1 | 0.005 | 1.10 | 2.0 | 0.06 | 17.89 | 0.01 | 1.959 | 19.86 | 4.47 | 7.3 | 92.7 | 0.0 | -2.01 | 1.76 | 0.68 | 0.63 | 1.39 | 27063 | 3093 | 68 | 0 | 210 | 0 | 0 | logfile |
✔ | 6H5i | 0140 | 2023-08-09 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 15.36 | 0.00 | 2.097 | 14.22 | 0.32 | 4.1 | 95.9 | 0.0 | 1.46 | 1.26 | 0.37 | 0.24 | 0.27 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KFK | 9974 | 2023-08-13 | 2019-07-08 | 4.1 | 4.28 | — | 15.0 | 0.015 | 1.99 | 0.0 | 0.08 | 10.94 | 0.01 | 1.444 | 20.13 | 0.00 | 8.2 | 89.5 | 2.2 | -1.03 | 0.14 | 0.06 | — | 4.2 | 0.003 | 0.84 | 0.0 | 0.05 | 12.77 | 0.00 | 2.091 | 18.31 | 0.01 | 7.4 | 91.8 | 0.9 | -0.89 | 2.83 | 0.23 | 0.28 | — | 65076 | 8844 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DFo | 27409 | 2023-08-17 | 2022-06-22 | 3.1 | 3.40 | 3.29 | 7.2 | 0.022 | 1.64 | 93.0 | 0.16 | 17.81 | 0.01 | 1.724 | 6.88 | 0.57 | 4.8 | 95.2 | 0.0 | -0.44 | 0.27 | 0.07 | 0.22 | 3.4 | 0.003 | 0.75 | 0.0 | 0.04 | 17.28 | 0.01 | 2.086 | 17.82 | 0.12 | 4.2 | 95.8 | 0.0 | -0.71 | 1.86 | 0.44 | 0.39 | 0.56 | 23861 | 2912 | 13 | 45 | 0 | 0 | 0 | logfile |
✔ | 8HiA | 34813 | 2023-08-10 | 2022-11-19 | 4.9 | 4.49 | 2.13 | 9.6 | 0.001 | 0.36 | 0.0 | 0.05 | 15.83 | 0.00 | 2.251 | 1.11 | 2.86 | 12.1 | 87.6 | 0.2 | -4.39 | 0.47 | 0.07 | — | 9.3 | 0.006 | 0.81 | 0.0 | 0.05 | 13.96 | 0.00 | 2.003 | 41.39 | 4.76 | 14.3 | 85.7 | 0.0 | -7.09 | 12.61 | 0.65 | 0.22 | — | 7200 | 460 | 20 | 0 | 0 | 0 | 3660 | logfile |
✔ | 6TQM | 10555 | 2023-08-24 | 2019-12-16 | 3.8 | 4.34 | 3.78 | 20.0 | 0.014 | 0.98 | 0.0 | 0.12 | 15.01 | 0.01 | 2.083 | 4.06 | 1.40 | 14.5 | 85.5 | 0.0 | -5.95 | 0.30 | 0.07 | 0.30 | 3.9 | 0.003 | 0.78 | 0.0 | 0.04 | 15.99 | 0.00 | 1.902 | 16.86 | 0.14 | 11.1 | 88.9 | 0.0 | -3.64 | 1.33 | 0.39 | 0.26 | 0.42 | 39616 | 2578 | 6 | 0 | 4 | 0 | 19804 | logfile |
✔ | 6LTJ | 0974 | 2023-08-22 | 2020-01-22 | 3.7 | 4.16 | — | 15.0 | 0.010 | 1.08 | 12.0 | 0.07 | 22.08 | 0.01 | 2.173 | 14.05 | 2.63 | 6.4 | 93.3 | 0.3 | -3.67 | 0.46 | 0.08 | 0.04 | 3.6 | 0.004 | 0.79 | 0.0 | 0.04 | 22.52 | 0.00 | 2.045 | 22.04 | 0.34 | 4.6 | 95.4 | 0.0 | -0.58 | 1.62 | 0.60 | 0.29 | 0.45 | 34283 | 3656 | 21 | 238 | 1 | 0 | 0 | logfile |
✘ | 6RBE | 4795 | 2023-08-17 | 2019-04-10 | 3.8 | 3.81 | 4.03 | 5.1 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.38 | 0.09 | 0.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✔ | 8GWE | 34310 | 2023-08-17 | 2022-09-16 | 2.66 | 3.19 | 2.77 | 16.0 | 0.009 | 0.97 | 5.0 | 0.06 | 17.61 | 0.01 | 1.065 | 13.66 | 5.00 | 8.4 | 91.2 | 0.3 | -1.93 | 0.39 | 0.09 | 0.45 | 10.1 | 0.003 | 0.74 | 0.0 | 0.04 | 17.58 | 0.00 | 1.950 | 15.89 | 3.34 | 8.5 | 91.3 | 0.2 | -1.91 | 1.11 | 0.44 | 0.22 | 0.12 | 22040 | 2668 | 15 | 56 | 10 | 1 | 0 | logfile |