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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3JC2 | 3245 | 2023-08-09 | 2015-11-15 | 3.6 | 3.58 | 3.97 | 3.7 | 0.012 | 1.63 | 2.0 | 0.08 | 14.90 | 0.01 | 1.175 | 18.51 | 7.32 | 11.5 | 84.5 | 4.0 | -4.52 | 0.22 | 0.59 | 1.48 | 3.6 | 0.004 | 0.86 | 0.0 | 0.04 | 17.18 | 0.00 | 2.128 | 14.33 | 0.49 | 7.4 | 91.9 | 0.6 | -1.41 | 3.32 | 0.24 | 0.53 | 1.66 | 3911 | 482 | 4 | 0 | 32 | 0 | 0 | logfile |
✔ | 6GTD | 0062 | 2023-08-09 | 2018-06-18 | 4.24 | 4.28 | — | 3.9 | 0.009 | 1.26 | 0.0 | 0.08 | 21.74 | 0.01 | 2.138 | 13.01 | 0.00 | 19.8 | 80.2 | 0.0 | -5.72 | 0.78 | 0.65 | — | 3.8 | 0.008 | 0.99 | 0.0 | 0.07 | 20.73 | 0.00 | 1.909 | 27.42 | 0.00 | 22.2 | 77.8 | 0.0 | -3.42 | 0.97 | 0.79 | 0.67 | — | 6456 | 1269 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 7SB2 | 24961 | 2023-08-09 | 2021-09-23 | 3.4 | 3.66 | 3.14 | 3.3 | 0.007 | 0.79 | 0.0 | 0.04 | 14.92 | 0.00 | 2.178 | 23.65 | 0.00 | 8.4 | 91.4 | 0.2 | -0.29 | 0.83 | 0.84 | 1.22 | 3.3 | 0.003 | 0.72 | 0.0 | 0.04 | 16.36 | 0.00 | 2.237 | 17.31 | 0.40 | 5.9 | 94.1 | 0.0 | 0.78 | 0.47 | 0.82 | 0.85 | 0.71 | 4715 | 598 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8SBB | 40303 | 2023-08-09 | 2023-04-03 | 3.59 | 4.04 | 3.46 | 3.9 | 0.016 | 1.33 | 0.0 | 0.07 | 15.68 | 0.01 | 2.146 | 19.11 | 3.99 | 14.9 | 85.1 | 0.0 | -5.32 | 0.64 | 0.80 | 2.32 | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 15.91 | 0.01 | 2.162 | 7.69 | 0.23 | 5.1 | 94.9 | 0.0 | -2.10 | 0.84 | 0.66 | 0.82 | 2.28 | 4049 | 499 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 7Ji3 | 22343 | 2023-08-09 | 2020-07-22 | 3.46 | 4.28 | — | 4.0 | 0.005 | 0.79 | 0.0 | 0.05 | 13.46 | 0.01 | 2.365 | 6.77 | 0.00 | 3.6 | 96.4 | 0.0 | -5.13 | 0.64 | 0.72 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6000 | 777 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7URE | 26710 | 2023-08-09 | 2022-04-21 | 3.19 | 3.51 | 3.25 | 3.4 | 0.017 | 0.78 | 0.0 | 0.78 | 14.25 | 0.00 | 2.118 | 9.65 | 0.00 | 5.7 | 94.3 | 0.0 | -2.27 | 0.60 | 0.85 | 3.70 | 3.4 | 0.002 | 1.07 | 0.0 | 0.12 | 15.47 | 0.00 | 2.071 | 5.85 | 0.69 | 3.8 | 96.2 | 0.0 | 0.79 | 0.93 | 0.59 | 0.85 | 3.00 | 5450 | 678 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 7WQX | 32715 | 2023-08-09 | 2022-01-26 | 2.7 | 2.26 | — | 3.2 | 0.003 | 0.53 | 0.0 | 0.04 | 8.53 | 0.00 | 2.181 | 9.03 | 2.56 | 6.0 | 94.0 | 0.0 | -3.61 | 0.73 | 0.65 | 2.93 | 3.2 | 0.003 | 0.77 | 0.0 | 0.05 | 14.82 | 0.00 | 2.167 | 15.01 | 2.56 | 8.6 | 91.4 | 0.0 | -1.89 | 1.35 | 0.76 | 0.69 | 2.18 | 4022 | 501 | 1 | 0 | 9 | 0 | 0 | logfile |
✔ | 7P54 | 13194 | 2023-08-09 | 2021-07-14 | 3.3 | 3.29 | 3.21 | 3.5 | 0.004 | 0.55 | 0.0 | 0.04 | 13.63 | 0.00 | 2.206 | 6.98 | 0.00 | 1.7 | 98.3 | 0.0 | 4.08 | 0.53 | 0.76 | 1.07 | 3.5 | 0.003 | 0.52 | 0.0 | 0.05 | 16.25 | 0.00 | 2.253 | 7.30 | 0.30 | 2.7 | 97.3 | 0.0 | 4.46 | 1.36 | 0.53 | 0.78 | 0.82 | 6248 | 794 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 7SWN | 25476 | 2023-08-09 | 2021-11-20 | 4.3 | 3.77 | — | 3.5 | 0.007 | 1.06 | 0.0 | 0.06 | 14.58 | 0.01 | 2.203 | 41.73 | 0.00 | 21.9 | 78.1 | 0.0 | -4.82 | 0.57 | 0.68 | — | 3.5 | 0.003 | 0.82 | 0.0 | 0.05 | 13.82 | 0.01 | 2.261 | 21.52 | 0.00 | 11.3 | 88.7 | 0.0 | -3.20 | 2.08 | 0.57 | 0.68 | — | 3283 | 422 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P5M | 13201 | 2023-08-09 | 2021-07-14 | 3.92 | 3.54 | 3.67 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 13.68 | 0.00 | 2.209 | 8.88 | 0.00 | 0.9 | 99.1 | 0.0 | 3.52 | 0.51 | 0.77 | 1.01 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 16.50 | 0.00 | 2.182 | 9.28 | 0.31 | 1.2 | 98.8 | 0.0 | 3.94 | 0.44 | 0.52 | 0.77 | 1.01 | 6204 | 788 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6JNC | 9847 | 2023-08-09 | 2019-03-14 | 3.7 | 3.76 | — | 3.8 | 0.009 | 0.87 | 0.0 | 0.05 | 14.72 | 0.01 | 2.304 | 3.18 | 9.09 | 4.8 | 95.2 | 0.0 | -5.69 | 0.46 | 0.78 | 1.61 | 3.8 | 0.004 | 0.61 | 0.0 | 0.05 | 16.03 | 0.00 | 2.240 | 5.61 | 0.59 | 3.8 | 96.2 | 0.0 | -1.17 | 1.78 | 0.52 | 0.88 | 2.42 | 3294 | 419 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6NPJ | 0471 | 2023-08-09 | 2019-01-17 | 3.8 | 3.73 | — | 3.7 | 0.008 | 1.24 | 0.0 | 0.07 | 17.12 | 0.01 | 2.246 | 7.07 | 6.25 | 8.8 | 91.2 | 0.0 | -5.64 | 0.62 | 0.77 | 2.47 | 3.7 | 0.003 | 0.71 | 0.0 | 0.04 | 17.43 | 0.00 | 2.278 | 10.04 | 0.30 | 6.1 | 93.9 | 0.0 | -2.01 | 0.85 | 0.63 | 0.78 | 2.22 | 6186 | 768 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7D5i | 30582 | 2023-08-09 | 2020-09-26 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6232 | 793 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 6QPi | 4614 | 2023-08-09 | 2019-02-14 | 3.3 | 3.37 | 2.73 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 6.59 | 0.01 | 2.432 | 2.09 | 0.00 | 1.4 | 98.6 | 0.0 | -3.02 | 0.39 | 0.62 | — | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 5.28 | 0.00 | 2.448 | 1.19 | 0.00 | 2.6 | 97.4 | 0.0 | 1.11 | 0.59 | 0.41 | 0.64 | — | 2288 | 462 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E4Q | 27896 | 2023-08-09 | 2022-08-18 | 3.51 | 3.90 | 3.48 | 3.7 | 0.004 | 0.62 | 0.0 | 0.04 | 13.32 | 0.02 | 1.966 | 7.31 | 0.15 | 3.5 | 96.5 | 0.0 | 1.23 | 0.68 | 0.78 | 1.65 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 14.33 | 0.00 | 2.064 | 4.76 | 0.26 | 3.4 | 96.6 | 0.0 | 2.13 | 0.70 | 0.70 | 0.79 | 1.64 | 53136 | 3576 | 8 | 0 | 4 | 0 | 25664 | logfile |
✔ | 7WWB | 32865 | 2023-08-09 | 2022-02-12 | 3.86 | 4.08 | — | 4.1 | 0.008 | 0.97 | 0.0 | 0.07 | 9.51 | 0.01 | 2.511 | 0.45 | 0.00 | 2.5 | 97.5 | 0.0 | 0.18 | 0.48 | 0.76 | 2.65 | 4.1 | 0.004 | 0.75 | 0.0 | 0.04 | 15.89 | 0.01 | 2.208 | 9.75 | 1.01 | 4.8 | 94.9 | 0.3 | -0.24 | 1.66 | 0.51 | 0.80 | 2.12 | 5428 | 666 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7M4U | 23666 | 2023-08-09 | 2021-03-22 | 2.71 | 1.78 | — | 1.6 | 0.006 | 0.58 | 2.0 | 0.04 | 14.94 | 0.02 | 1.771 | 4.42 | 0.20 | 3.1 | 96.7 | 0.2 | 1.08 | 0.79 | 0.76 | 3.70 | 1.6 | 0.004 | 0.76 | 0.0 | 0.04 | 16.09 | 0.01 | 1.732 | 5.99 | 2.36 | 3.6 | 96.2 | 0.2 | 0.59 | 1.72 | 0.82 | 0.81 | 3.40 | 51764 | 2386 | 27 | 1528 | 84 | 191 | 0 | logfile |
✘ | 8HF2 | 34710 | 2023-08-09 | 2022-11-09 | 4.14 | 5.08 | 4.11 | 4.8 | 0.012 | 1.04 | 0.0 | 0.05 | 14.20 | 0.00 | 2.264 | 15.84 | 0.00 | 5.1 | 94.9 | 0.0 | -4.39 | 0.57 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4660 | 600 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5MSH | 3565 | 2023-08-09 | 2017-01-04 | 4.25 | 3.96 | — | 20.0 | 0.014 | 1.56 | 0.0 | 0.07 | 9.56 | 0.01 | 2.323 | 3.07 | 0.00 | 6.1 | 92.5 | 1.5 | -0.93 | 0.01 | 0.02 | — | 3.7 | 0.003 | 0.76 | 0.0 | 0.05 | 12.62 | 0.01 | 2.155 | 14.78 | 0.00 | 6.1 | 93.8 | 0.2 | -0.92 | 2.67 | 0.04 | 0.14 | — | 4287 | 551 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WoG | 32651 | 2023-08-09 | 2022-01-21 | 4.06 | 2.95 | — | 2.0 | 0.001 | 0.41 | 0.0 | 0.04 | 8.09 | 0.00 | 2.293 | 10.22 | 3.78 | 8.0 | 92.0 | 0.0 | -3.98 | 0.51 | 0.51 | — | 2.2 | 0.003 | 0.71 | 0.0 | 0.04 | 10.94 | 0.00 | 2.020 | 21.35 | 0.00 | 13.1 | 86.9 | 0.0 | -2.59 | 1.02 | 0.54 | 0.55 | — | 3362 | 433 | 3 | 0 | 0 | 0 | 0 | logfile |