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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6DKF | 7952 | 2023-08-14 | 2018-05-29 | 3.7 | 3.47 | — | 3.8 | 0.010 | 0.88 | 0.0 | 0.05 | 8.96 | 0.00 | 1.761 | 11.87 | 0.00 | 3.9 | 96.1 | 0.0 | -5.10 | 0.73 | 0.76 | 2.82 | 3.7 | 0.003 | 0.75 | 0.0 | 0.04 | 16.32 | 0.00 | 2.148 | 14.14 | 0.60 | 2.3 | 97.7 | 0.0 | -0.16 | 1.78 | 0.74 | 0.79 | 2.03 | 17060 | 2314 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W64 | 21552 | 2023-08-10 | 2020-03-16 | 3.9 | 4.06 | — | 4.0 | 0.003 | 0.58 | 0.0 | 0.04 | 13.75 | 0.00 | 2.196 | 9.67 | 1.29 | 7.0 | 92.9 | 0.1 | 0.30 | 0.74 | 0.70 | 0.86 | 4.0 | 0.003 | 0.71 | 0.0 | 0.04 | 18.15 | 0.00 | 2.182 | 18.29 | 0.52 | 8.4 | 91.6 | 0.0 | -0.73 | 0.94 | 0.75 | 0.71 | 1.16 | 8505 | 928 | 3 | 56 | 0 | 0 | 0 | logfile |
✔ | 3J89 | 6123 | 2023-08-11 | 2014-10-07 | 3.6 | 2.21 | — | 3.5 | 0.022 | 1.64 | 0.0 | 0.10 | 11.97 | 0.01 | 2.578 | 2.11 | 0.00 | 3.5 | 96.5 | 0.0 | -0.96 | 0.83 | 0.81 | 0.77 | 3.2 | 0.003 | 0.49 | 0.0 | 0.03 | 20.68 | 0.00 | 2.114 | 8.31 | 1.00 | 0.6 | 99.4 | 0.0 | 3.03 | 1.98 | 0.81 | 0.79 | 0.31 | 9025 | 551 | 19 | 0 | 0 | 0 | 4598 | logfile |
✘ | 7EK1 | 31165 | 2023-08-09 | 2021-04-03 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.75 | — | — | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53500 | 6720 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VVo | 32146 | 2023-08-10 | 2021-11-06 | 4.1 | 2.82 | 3.93 | 4.0 | 0.014 | 1.88 | 0.0 | 0.09 | 15.54 | 0.01 | 2.158 | 9.28 | 3.81 | 4.5 | 95.5 | 0.1 | -1.84 | 0.70 | 0.74 | — | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 13.97 | 0.00 | 2.115 | 12.08 | 0.00 | 3.2 | 96.8 | 0.0 | 0.24 | 2.35 | 0.69 | 0.69 | — | 7942 | 1059 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 1oED | 1044 | 2023-08-09 | 2003-03-24 | 4.0 | 3.94 | — | 10.4 | 0.014 | 2.29 | 3.0 | 0.10 | 17.23 | 0.01 | 1.183 | 224.94 | 19.76 | 5.2 | 92.7 | 2.1 | -3.67 | 0.39 | 0.18 | — | 9.0 | 0.004 | 1.06 | 0.0 | 0.05 | 15.88 | 0.01 | 2.224 | 22.69 | 0.69 | 2.3 | 97.7 | 0.0 | 1.70 | 2.92 | 0.63 | 0.45 | — | 4926 | 636 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VFE | 31950 | 2023-08-12 | 2021-09-13 | 2.63 | 2.74 | 2.54 | 2.7 | 0.008 | 0.58 | 0.0 | 0.05 | 13.52 | 0.00 | 2.285 | 2.98 | 3.08 | 3.8 | 96.2 | 0.0 | -0.79 | 0.84 | 0.89 | 5.29 | 2.7 | 0.003 | 0.55 | 0.0 | 0.05 | 16.07 | 0.00 | 2.254 | 3.78 | 2.46 | 2.0 | 98.0 | 0.0 | 0.41 | 1.14 | 0.81 | 0.89 | 4.84 | 12630 | 1587 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VHA | 21201 | 2023-08-09 | 2020-01-09 | 4.3 | 4.35 | — | 7.8 | 0.007 | 1.02 | 0.0 | 0.05 | 15.14 | 0.01 | 2.319 | 26.84 | 2.13 | 12.4 | 87.6 | 0.0 | -4.78 | 0.55 | 0.54 | — | 4.1 | 0.003 | 0.74 | 0.0 | 0.05 | 13.40 | 0.00 | 2.336 | 12.82 | 0.00 | 9.8 | 90.2 | 0.0 | -4.37 | 3.38 | 0.57 | 0.60 | — | 2439 | 321 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oFH | 20046 | 2023-08-12 | 2019-03-29 | 3.7 | 3.79 | — | 3.8 | 0.008 | 0.75 | 0.0 | 0.05 | 7.71 | 0.01 | 2.097 | 3.74 | 0.00 | 5.3 | 94.7 | 0.0 | -6.76 | 0.59 | 0.83 | 1.69 | 3.8 | 0.004 | 0.69 | 0.0 | 0.04 | 17.12 | 0.00 | 2.115 | 10.05 | 0.40 | 3.5 | 96.5 | 0.0 | 1.97 | 0.84 | 0.60 | 0.84 | 0.81 | 11628 | 1482 | 19 | 0 | 0 | 0 | 0 | logfile |
✔ | 6M0S | 30035 | 2023-08-26 | 2020-02-22 | 3.6 | 3.77 | — | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 8.18 | 0.00 | 2.205 | 1.30 | 0.00 | 1.9 | 98.1 | 0.0 | -4.94 | 0.71 | 0.74 | 1.42 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 14.47 | 0.00 | 2.040 | 5.55 | 0.17 | 2.9 | 97.1 | 0.0 | -0.51 | 1.34 | 0.76 | 0.81 | 1.73 | 44660 | 2909 | 15 | 0 | 0 | 0 | 22618 | logfile |
✔ | 8iL3 | 35526 | 2023-08-10 | 2023-03-01 | 3.86 | 4.17 | 3.88 | 3.9 | 0.009 | 1.39 | 0.0 | 0.08 | 18.38 | 0.01 | 2.362 | 6.55 | 8.75 | 10.6 | 89.4 | 0.0 | -5.16 | 0.80 | 0.71 | 1.53 | 3.9 | 0.004 | 0.70 | 0.0 | 0.04 | 17.51 | 0.00 | 2.132 | 15.26 | 0.17 | 8.2 | 91.8 | 0.0 | -2.50 | 1.38 | 0.81 | 0.73 | 1.69 | 5172 | 665 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PoM | 20416 | 2023-08-09 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 17.29 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.28 | 0.0 | 0.06 | 21.46 | 0.01 | 1.930 | 61.80 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.76 | 0.75 | 0.80 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 6B47 | 7051 | 2023-08-17 | 2017-09-25 | 3.2 | 3.29 | — | 3.2 | 0.009 | 1.03 | 0.0 | 0.06 | 11.55 | 0.01 | 1.819 | 6.49 | 0.00 | 10.6 | 89.2 | 0.2 | -4.03 | 0.78 | 0.73 | 1.20 | 3.2 | 0.003 | 0.60 | 0.0 | 0.04 | 14.35 | 0.00 | 2.077 | 9.04 | 0.37 | 6.9 | 93.1 | 0.0 | -0.31 | 1.37 | 0.86 | 0.87 | 2.70 | 22213 | 2965 | 11 | 60 | 0 | 0 | 0 | logfile |
✘ | 7T4K | 25678 | 2023-08-09 | 2021-12-10 | 3.25 | 3.56 | 3.27 | 3.4 | 0.005 | 0.88 | 0.0 | 0.05 | 12.76 | 0.01 | 2.287 | 3.74 | 0.15 | 2.3 | 97.7 | 0.0 | 0.51 | 0.73 | 0.84 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6180 | 782 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TT0 | 26106 | 2023-08-13 | 2022-01-31 | 4.3 | 4.51 | — | 4.4 | 0.005 | 0.84 | 0.0 | 0.05 | 10.42 | 0.00 | 2.151 | 3.09 | 0.00 | 1.2 | 98.8 | 0.0 | 1.30 | 0.68 | 0.75 | — | 4.4 | 0.003 | 0.56 | 0.0 | 0.04 | 12.19 | 0.00 | 1.948 | 8.53 | 0.00 | 3.2 | 96.8 | 0.0 | 0.59 | 1.10 | 0.69 | 0.77 | — | 14884 | 962 | 5 | 0 | 0 | 0 | 7253 | logfile |
✔ | 7NJ3 | 12371 | 2023-08-20 | 2021-02-15 | 4.48 | 4.72 | — | 4.6 | 0.004 | 0.70 | 1.0 | 0.05 | 13.64 | 0.00 | 1.907 | 8.92 | 0.38 | 4.2 | 95.8 | 0.0 | -0.73 | 0.57 | 0.36 | — | 4.6 | 0.006 | 0.81 | 0.0 | 0.04 | 13.81 | 0.01 | 1.754 | 25.13 | 0.00 | 8.4 | 91.6 | 0.0 | -2.08 | 2.79 | 0.72 | 0.62 | — | 28778 | 1795 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 7D20 | 30552 | 2023-08-13 | 2020-09-15 | 3.0 | 3.72 | — | 3.6 | 0.009 | 0.81 | 0.0 | 0.06 | 28.76 | 0.00 | 1.752 | 12.79 | 0.00 | 5.2 | 94.8 | 0.0 | -3.29 | 0.78 | 0.79 | 2.68 | 3.6 | 0.003 | 0.67 | 0.0 | 0.05 | 28.35 | 0.00 | 2.150 | 9.97 | 1.59 | 2.8 | 97.2 | 0.0 | 1.73 | 0.57 | 0.72 | 0.70 | 2.25 | 12836 | 914 | 11 | 272 | 0 | 0 | 0 | logfile |
✔ | 7V6B | 31741 | 2023-08-13 | 2021-08-20 | 3.3 | 2.81 | 3.21 | 3.3 | 0.012 | 1.65 | 3.0 | 0.09 | 13.69 | 0.01 | 2.312 | 6.55 | 5.01 | 4.3 | 95.7 | 0.0 | -1.67 | 0.57 | 0.72 | 2.30 | 3.2 | 0.003 | 0.60 | 0.0 | 0.04 | 16.10 | 0.00 | 2.216 | 9.41 | 0.20 | 2.6 | 97.4 | 0.0 | 0.69 | 1.91 | 0.69 | 0.80 | 2.27 | 13633 | 1678 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TJo | 10512 | 2023-08-09 | 2019-11-26 | 3.2 | 3.43 | 2.57 | 3.5 | 0.013 | 1.18 | 0.0 | 0.07 | 9.67 | 0.01 | 2.394 | 2.20 | 0.00 | 12.7 | 87.3 | 0.0 | -4.63 | 0.36 | 0.76 | 4.64 | 3.5 | 0.003 | 0.74 | 0.0 | 0.05 | 12.71 | 0.00 | 2.308 | 6.81 | 0.00 | 5.4 | 94.6 | 0.0 | -3.46 | 1.41 | 0.34 | 0.75 | 4.46 | 2439 | 321 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZRQ | 11382 | 2023-08-09 | 2020-07-14 | 3.9 | 4.06 | — | 4.2 | 0.014 | 1.45 | 0.0 | 0.05 | 12.35 | 0.00 | 2.597 | 20.13 | 0.00 | 5.0 | 95.0 | 0.0 | -4.20 | 0.64 | 0.62 | 3.62 | 4.2 | 0.003 | 0.72 | 0.0 | 0.05 | 13.32 | 0.00 | 2.161 | 21.15 | 0.46 | 16.2 | 83.8 | 0.0 | -5.88 | 2.14 | 0.70 | 0.77 | 2.54 | 3816 | 276 | 12 | 0 | 0 | 0 | 1776 | logfile |