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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7XDD | 33144 | 2023-08-11 | 2022-03-26 | 2.93 | 2.56 | 2.92 | 3.0 | 0.005 | 0.72 | 0.0 | 0.05 | 14.36 | 0.00 | 2.204 | 6.52 | 2.03 | 2.4 | 97.6 | 0.0 | 0.32 | 0.79 | 0.85 | 3.21 | 3.0 | 0.003 | 0.60 | 0.0 | 0.04 | 16.22 | 0.00 | 2.100 | 7.14 | 1.93 | 2.1 | 97.9 | 0.0 | 1.85 | 0.47 | 0.80 | 0.87 | 2.70 | 9021 | 1123 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J2X | 9772 | 2023-08-09 | 2019-01-03 | 3.8 | 3.99 | — | 3.9 | 0.002 | 0.40 | 0.0 | 0.04 | 7.12 | 0.00 | 2.220 | 6.65 | 0.00 | 5.8 | 94.1 | 0.1 | -3.52 | 0.80 | 0.70 | 0.49 | 3.9 | 0.004 | 0.78 | 1.0 | 0.04 | 15.31 | 0.00 | 2.050 | 18.52 | 0.40 | 4.7 | 95.2 | 0.1 | -0.69 | 1.88 | 0.84 | 0.78 | 0.88 | 106176 | 13501 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WBB | 32396 | 2023-08-22 | 2021-12-16 | 3.6 | 3.64 | — | 3.5 | 0.002 | 0.55 | 2.0 | 0.04 | 13.74 | 0.00 | 2.206 | 9.66 | 0.11 | 5.0 | 94.6 | 0.3 | 0.91 | 0.80 | 0.74 | 0.62 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 15.29 | 0.00 | 2.185 | 10.94 | 0.25 | 5.8 | 93.7 | 0.4 | 0.32 | 1.90 | 0.83 | 0.80 | 1.15 | 33634 | 4329 | 13 | 0 | 33 | 0 | 0 | logfile |
✔ | 8HiA | 34813 | 2023-08-10 | 2022-11-19 | 4.9 | 4.49 | 2.13 | 9.6 | 0.001 | 0.36 | 0.0 | 0.05 | 15.83 | 0.00 | 2.251 | 1.11 | 2.86 | 12.1 | 87.6 | 0.2 | -4.39 | 0.47 | 0.07 | — | 9.3 | 0.006 | 0.81 | 0.0 | 0.05 | 13.96 | 0.00 | 2.003 | 41.39 | 4.76 | 14.3 | 85.7 | 0.0 | -7.09 | 12.61 | 0.65 | 0.22 | — | 7200 | 460 | 20 | 0 | 0 | 0 | 3660 | logfile |
✘ | 5GW4 | 9540 | 2023-08-12 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WJM | 32545 | 2023-08-12 | 2022-01-07 | 3.3 | 3.53 | — | 3.5 | 0.003 | 0.48 | 0.0 | 0.04 | 10.78 | 0.00 | 2.265 | 3.14 | 0.29 | 5.0 | 95.0 | 0.0 | 1.87 | 0.70 | 0.85 | 2.41 | 3.5 | 0.003 | 0.53 | 0.0 | 0.04 | 14.04 | 0.00 | 2.249 | 4.73 | 0.07 | 4.2 | 95.7 | 0.1 | 2.19 | 3.23 | 0.71 | 0.86 | 1.94 | 12970 | 1614 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WoA | 32646 | 2023-08-21 | 2022-01-21 | 3.25 | 2.98 | — | 3.2 | 0.002 | 0.45 | 0.0 | 0.04 | 8.94 | 0.00 | 2.229 | 6.56 | 4.23 | 3.8 | 96.2 | 0.0 | -3.46 | 0.86 | 0.78 | 2.52 | 3.2 | 0.004 | 0.67 | 0.0 | 0.05 | 13.80 | 0.00 | 2.135 | 10.52 | 0.43 | 7.5 | 92.5 | 0.0 | -1.91 | 1.43 | 0.89 | 0.85 | 2.88 | 31952 | 4060 | 10 | 0 | 39 | 0 | 0 | logfile |
✔ | 7E83 | 31009 | 2023-08-12 | 2021-02-28 | 3.1 | 3.20 | 2.96 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 15.41 | 0.00 | 2.153 | 7.05 | 0.00 | 9.0 | 90.7 | 0.3 | -0.08 | 0.71 | 0.80 | 3.01 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 17.03 | 0.00 | 2.164 | 9.22 | 0.22 | 7.6 | 92.2 | 0.3 | 0.48 | 0.47 | 0.69 | 0.82 | 2.62 | 12704 | 1544 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DSC | 30830 | 2023-08-12 | 2020-12-30 | 3.5 | 3.66 | — | 3.5 | 0.004 | 0.56 | 0.0 | 0.04 | 12.79 | 0.00 | 2.299 | 4.53 | 0.00 | 1.6 | 98.4 | 0.0 | -0.35 | 0.53 | 0.73 | 2.13 | 3.5 | 0.004 | 0.92 | 0.0 | 0.05 | 16.30 | 0.00 | 2.229 | 13.81 | 0.66 | 2.8 | 97.2 | 0.0 | 1.83 | 0.97 | 0.57 | 0.77 | 2.26 | 11848 | 1528 | 16 | 0 | 8 | 0 | 0 | logfile |
✔ | 8A3T | 15123 | 2023-08-11 | 2022-06-09 | 3.5 | 4.11 | 4.11 | 4.0 | 0.004 | 0.75 | 0.0 | 0.04 | 14.99 | 0.00 | 1.542 | 18.91 | 0.10 | 3.9 | 95.9 | 0.2 | 0.49 | 0.80 | 0.75 | 0.73 | 4.0 | 0.003 | 0.65 | 0.0 | 0.04 | 15.86 | 0.00 | 2.073 | 13.02 | 0.24 | 4.1 | 95.7 | 0.1 | 1.15 | 0.51 | 0.80 | 0.76 | 0.70 | 61351 | 7661 | 19 | 0 | 3 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2023-08-13 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 6.82 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 7WJo | 32547 | 2023-08-12 | 2022-01-07 | 3.2 | 3.40 | — | 3.3 | 0.010 | 0.50 | 0.0 | 0.04 | 10.50 | 0.00 | 2.203 | 4.21 | 0.29 | 4.4 | 95.6 | 0.0 | 1.94 | 0.67 | 0.82 | 2.26 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 14.49 | 0.00 | 2.235 | 5.93 | 0.15 | 5.0 | 95.0 | 0.0 | 1.36 | 0.53 | 0.68 | 0.85 | 1.72 | 12932 | 1602 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7X75 | 33032 | 2023-08-23 | 2022-03-09 | 3.45 | 3.68 | 3.54 | 3.6 | 0.004 | 0.75 | 1.0 | 0.05 | 19.81 | 0.00 | 1.963 | 4.97 | 0.66 | 3.2 | 96.8 | 0.0 | 0.42 | 0.78 | 0.73 | 1.36 | 3.6 | 0.004 | 0.69 | 0.0 | 0.04 | 20.44 | 0.00 | 2.025 | 12.65 | 0.57 | 3.7 | 96.3 | 0.0 | 0.22 | 0.59 | 0.81 | 0.80 | 1.39 | 34872 | 4055 | 22 | 168 | 21 | 0 | 0 | logfile |
✔ | 8DJB | 27459 | 2023-08-14 | 2022-06-30 | 3.18 | 3.51 | 3.10 | 3.3 | 0.005 | 0.72 | 0.0 | 0.06 | 12.90 | 0.00 | 1.908 | 12.93 | 6.96 | 4.2 | 95.6 | 0.2 | -0.69 | 0.82 | 0.81 | 1.93 | 3.3 | 0.004 | 0.63 | 0.0 | 0.05 | 15.45 | 0.00 | 2.175 | 6.97 | 0.33 | 3.4 | 96.6 | 0.0 | 0.84 | 1.05 | 0.86 | 0.90 | 2.28 | 16781 | 2156 | 9 | 0 | 1 | 0 | 0 | logfile |
✔ | 6KS7 | 0759 | 2023-08-12 | 2019-08-23 | 4.62 | 4.57 | — | 4.5 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.241 | 5.72 | 0.00 | 4.3 | 95.7 | 0.0 | -3.50 | 0.70 | 0.62 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 12.04 | 0.00 | 2.131 | 14.80 | 0.03 | 3.3 | 96.6 | 0.1 | -0.06 | 1.85 | 0.74 | 0.67 | — | 62022 | 8131 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RES | 24438 | 2023-08-21 | 2021-07-13 | 3.05 | 2.96 | — | 2.9 | 0.017 | 1.40 | 3.0 | 0.06 | 16.62 | 0.00 | 2.150 | 11.59 | 4.87 | 7.0 | 93.0 | 0.1 | -3.02 | 0.64 | 0.83 | 4.11 | 3.0 | 0.003 | 0.56 | 0.0 | 0.04 | 16.73 | 0.00 | 2.062 | 9.92 | 0.29 | 4.7 | 95.3 | 0.0 | -0.49 | 1.12 | 0.64 | 0.84 | 3.12 | 30088 | 3856 | 16 | 0 | 32 | 0 | 0 | logfile |
✔ | 6UVA | 20906 | 2023-08-11 | 2019-11-01 | 2.3 | 2.12 | 2.31 | 2.2 | 0.002 | 0.55 | 0.0 | 0.04 | 18.04 | 0.00 | 2.207 | 6.66 | 3.36 | 3.2 | 96.8 | 0.0 | -2.29 | 0.63 | 0.72 | 2.83 | 2.3 | 0.003 | 0.63 | 0.0 | 0.04 | 18.40 | 0.00 | 2.148 | 9.03 | 3.26 | 4.6 | 95.4 | 0.0 | 0.18 | 1.31 | 0.66 | 0.79 | 2.96 | 9561 | 1199 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW5 | 9541 | 2023-08-12 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.87 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U5i | 26351 | 2023-08-17 | 2022-03-02 | 3.26 | 3.14 | 3.37 | 3.2 | 0.002 | 0.56 | 0.0 | 0.04 | 11.62 | 0.00 | 2.219 | 7.74 | 2.82 | 0.8 | 99.2 | 0.0 | 0.87 | 0.63 | 0.75 | 1.83 | 3.2 | 0.003 | 0.72 | 0.0 | 0.05 | 16.39 | 0.00 | 2.159 | 15.05 | 0.16 | 2.1 | 97.9 | 0.0 | -0.02 | 0.67 | 0.67 | 0.78 | 1.94 | 23539 | 2904 | 16 | 0 | 0 | 123 | 0 | logfile |
✔ | 7T0V | 25582 | 2023-08-19 | 2021-11-30 | 3.67 | 3.89 | — | 3.8 | 0.004 | 0.73 | 0.0 | 0.04 | 9.80 | 0.00 | 1.857 | 10.12 | 1.71 | 4.0 | 95.8 | 0.1 | -0.13 | 0.80 | 0.77 | 1.76 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 14.39 | 0.00 | 1.886 | 13.18 | 0.39 | 4.0 | 95.9 | 0.1 | 0.84 | 1.39 | 0.81 | 0.79 | 1.24 | 26397 | 3397 | 13 | 0 | 20 | 0 | 0 | logfile |