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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8GPN | 34195 | 2023-08-13 | 2022-08-26 | 3.2 | 3.80 | 3.24 | 3.4 | 0.007 | 0.62 | 0.0 | 0.04 | 26.27 | 0.00 | 2.193 | 8.82 | 0.11 | 2.6 | 97.4 | 0.0 | 1.29 | 0.84 | 0.80 | 3.26 | 3.4 | 0.003 | 0.58 | 0.0 | 0.03 | 26.69 | 0.00 | 2.133 | 9.44 | 0.34 | 2.6 | 97.3 | 0.1 | 2.31 | 1.56 | 0.86 | 0.85 | 1.90 | 15047 | 1211 | 11 | 292 | 0 | 0 | 0 | logfile |
✔ | 7FDK | 31546 | 2023-08-09 | 2021-07-16 | 3.69 | 3.82 | — | 3.8 | 0.008 | 0.88 | 0.0 | 0.05 | 15.41 | 0.01 | 2.080 | 18.21 | 0.29 | 13.2 | 86.7 | 0.1 | -4.54 | 0.61 | 0.79 | 1.60 | 3.8 | 0.004 | 0.74 | 0.0 | 0.04 | 16.78 | 0.00 | 2.101 | 14.95 | 0.44 | 8.1 | 91.6 | 0.3 | -0.75 | 0.69 | 0.60 | 0.77 | 1.26 | 6449 | 791 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7XA3 | 33086 | 2023-08-11 | 2022-03-17 | 2.9 | 2.18 | — | 2.1 | 0.005 | 0.85 | 0.0 | 0.05 | 7.87 | 0.01 | 2.250 | 4.13 | 0.00 | 2.5 | 97.5 | 0.0 | 0.60 | 0.75 | 0.74 | 3.21 | 1.8 | 0.003 | 0.62 | 0.0 | 0.04 | 14.17 | 0.00 | 2.192 | 9.41 | 2.38 | 3.4 | 96.6 | 0.0 | 1.61 | 1.17 | 0.78 | 0.78 | 2.75 | 9591 | 1220 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Bo5 | 7119 | 2023-08-14 | 2017-11-18 | 3.6 | 3.71 | — | 3.6 | 0.005 | 1.08 | 0.0 | 0.05 | 12.89 | 0.01 | 2.277 | 11.47 | 1.84 | 9.1 | 90.5 | 0.4 | -5.44 | 0.66 | 0.72 | 1.16 | 3.6 | 0.004 | 0.81 | 0.0 | 0.04 | 14.72 | 0.00 | 2.166 | 16.85 | 0.11 | 8.8 | 91.2 | 0.0 | -1.26 | 1.45 | 0.66 | 0.72 | 0.86 | 17236 | 2228 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DPW | 30811 | 2023-08-15 | 2020-12-21 | 2.65 | 2.76 | 2.62 | 2.7 | 0.008 | 0.80 | 0.0 | 0.05 | 19.09 | 0.01 | 2.044 | 9.27 | 7.41 | 6.1 | 93.7 | 0.2 | -3.36 | 0.73 | 0.82 | 3.06 | 2.7 | 0.003 | 0.69 | 0.0 | 0.04 | 19.17 | 0.00 | 2.156 | 7.58 | 4.17 | 4.0 | 95.8 | 0.2 | -0.51 | 1.17 | 0.74 | 0.83 | 2.94 | 17812 | 2224 | 12 | 0 | 16 | 32 | 0 | logfile |
✔ | 7oTW | 13068 | 2023-08-20 | 2021-06-10 | 2.99 | 3.85 | — | 3.2 | 0.009 | 0.97 | 0.0 | 0.05 | 14.24 | 0.01 | 1.672 | 14.73 | 0.28 | 10.0 | 89.9 | 0.2 | -2.30 | 0.80 | 0.71 | 1.78 | 3.2 | 0.003 | 0.77 | 0.0 | 0.04 | 15.61 | 0.00 | 2.155 | 11.38 | 0.81 | 6.7 | 93.2 | 0.1 | -0.23 | 1.42 | 0.89 | 0.82 | 1.23 | 29038 | 3636 | 1 | 0 | 21 | 0 | 0 | logfile |
✔ | 6QXE | 4666 | 2023-08-25 | 2019-03-07 | 4.15 | 4.14 | — | 4.0 | 0.008 | 0.92 | 0.0 | 0.05 | 14.95 | 0.01 | 1.734 | 14.58 | 0.13 | 7.5 | 92.3 | 0.2 | -3.74 | 0.67 | 0.54 | — | 4.0 | 0.004 | 0.70 | 0.0 | 0.04 | 14.22 | 0.00 | 1.853 | 18.96 | 0.00 | 8.3 | 91.6 | 0.1 | -1.44 | 1.76 | 0.77 | 0.73 | — | 40460 | 2626 | 10 | 24 | 0 | 0 | 19050 | logfile |
✔ | 6QP6 | 4611 | 2023-08-12 | 2019-02-13 | 3.2 | 3.29 | 3.19 | 3.3 | 0.010 | 1.06 | 0.0 | 0.18 | 15.49 | 0.01 | 1.975 | 5.89 | 0.45 | 2.8 | 97.2 | 0.0 | -2.74 | 0.64 | 0.80 | 2.31 | 3.3 | 0.005 | 0.66 | 0.0 | 0.04 | 16.53 | 0.00 | 2.053 | 10.44 | 0.52 | 3.3 | 96.7 | 0.0 | 0.37 | 0.51 | 0.64 | 0.82 | 2.35 | 12330 | 1482 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 6GTD | 0062 | 2023-08-09 | 2018-06-18 | 4.24 | 4.28 | — | 3.9 | 0.009 | 1.26 | 0.0 | 0.08 | 21.74 | 0.01 | 2.138 | 13.01 | 0.00 | 19.8 | 80.2 | 0.0 | -5.72 | 0.78 | 0.65 | — | 3.8 | 0.008 | 0.99 | 0.0 | 0.07 | 20.73 | 0.00 | 1.909 | 27.42 | 0.00 | 22.2 | 77.8 | 0.0 | -3.42 | 0.97 | 0.79 | 0.67 | — | 6456 | 1269 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 7DFL | 30665 | 2023-08-11 | 2020-11-09 | 3.3 | 4.03 | — | 3.9 | 0.008 | 0.95 | 0.0 | 0.06 | 11.97 | 0.01 | 1.910 | 9.78 | 0.00 | 6.1 | 93.9 | 0.0 | -0.96 | 0.63 | 0.75 | 2.51 | 3.9 | 0.004 | 0.74 | 0.0 | 0.04 | 15.67 | 0.00 | 2.070 | 13.69 | 0.00 | 4.7 | 95.3 | 0.0 | -0.18 | 0.91 | 0.56 | 0.73 | 2.23 | 8987 | 1133 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6GTC | 0061 | 2023-08-12 | 2018-06-18 | 3.91 | 3.85 | — | 3.8 | 0.004 | 0.94 | 0.0 | 0.05 | 15.72 | 0.01 | 2.275 | 5.90 | 0.86 | 8.8 | 91.2 | 0.0 | -5.69 | 0.70 | 0.67 | 1.97 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 18.32 | 0.00 | 2.033 | 13.75 | 0.17 | 7.9 | 92.1 | 0.0 | -2.79 | 1.14 | 0.71 | 0.69 | 1.56 | 11931 | 1280 | 4 | 65 | 0 | 0 | 0 | logfile |
✔ | 6oiJ | 20078 | 2023-08-10 | 2019-04-09 | 3.3 | 3.38 | — | 3.3 | 0.006 | 0.94 | 0.0 | 0.06 | 15.29 | 0.01 | 2.236 | 5.95 | 0.77 | 4.9 | 95.1 | 0.0 | -3.70 | 0.68 | 0.81 | 2.83 | 3.3 | 0.004 | 0.68 | 0.0 | 0.04 | 16.46 | 0.00 | 2.107 | 12.01 | 0.11 | 3.4 | 96.6 | 0.0 | -0.14 | 0.50 | 0.69 | 0.84 | 2.56 | 8877 | 1152 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 7X6L | 33023 | 2023-08-16 | 2022-03-07 | 3.7 | 2.76 | — | 2.2 | 0.002 | 0.45 | 0.0 | 0.04 | 7.43 | 0.00 | 2.291 | 4.47 | 2.04 | 1.9 | 97.9 | 0.2 | -3.07 | 0.64 | 0.56 | 0.95 | 2.1 | 0.003 | 0.81 | 0.0 | 0.05 | 13.64 | 0.00 | 2.090 | 18.01 | 0.50 | 4.0 | 95.9 | 0.1 | -1.15 | 0.98 | 0.67 | 0.61 | 1.26 | 21486 | 2781 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6T93 | 10408 | 2023-08-12 | 2019-10-25 | 3.49 | 4.10 | — | 3.7 | 0.014 | 1.15 | 0.0 | 0.06 | 27.23 | 0.01 | 2.435 | 0.74 | 0.00 | 0.3 | 99.7 | 0.0 | 0.78 | 0.87 | 0.85 | 2.94 | 3.7 | 0.004 | 0.68 | 0.0 | 0.03 | 28.03 | 0.00 | 2.203 | 11.73 | 0.95 | 3.0 | 97.0 | 0.0 | 2.52 | 2.06 | 0.87 | 0.87 | 1.78 | 12199 | 758 | 10 | 302 | 0 | 0 | 0 | logfile |
✔ | 7KAU | 22784 | 2023-08-11 | 2020-10-01 | 4.0 | 4.56 | 4.11 | 4.3 | 0.003 | 0.56 | 0.0 | 0.04 | 12.12 | 0.00 | 2.251 | 6.32 | 0.00 | 3.2 | 96.8 | 0.0 | -0.93 | 0.64 | 0.84 | — | 4.3 | 0.003 | 0.58 | 0.0 | 0.04 | 14.17 | 0.00 | 2.154 | 8.65 | 0.00 | 2.7 | 97.3 | 0.0 | 2.29 | 1.35 | 0.65 | 0.84 | — | 10711 | 1340 | 7 | 0 | 56 | 0 | 0 | logfile |
✔ | 6PB1 | 20285 | 2023-08-10 | 2019-06-12 | 2.8 | 3.39 | — | 3.4 | 0.003 | 0.79 | 0.0 | 0.06 | 8.98 | 0.01 | 2.288 | 4.32 | 0.00 | 1.9 | 98.1 | 0.0 | -2.93 | 0.56 | 0.75 | 2.79 | 3.4 | 0.005 | 0.64 | 0.0 | 0.04 | 15.15 | 0.00 | 2.164 | 8.47 | 2.36 | 3.0 | 97.0 | 0.0 | 0.23 | 1.27 | 0.54 | 0.78 | 2.92 | 8785 | 1069 | 7 | 0 | 9 | 0 | 0 | logfile |
✔ | 6Q2N | 20575 | 2023-08-13 | 2019-08-08 | 4.4 | 4.43 | — | 4.3 | 0.008 | 1.24 | 0.0 | 0.06 | 9.78 | 0.01 | 1.449 | 11.01 | 0.68 | 9.6 | 90.2 | 0.2 | -4.25 | 0.60 | 0.56 | — | 4.3 | 0.004 | 0.81 | 0.0 | 0.05 | 11.58 | 0.01 | 2.192 | 17.37 | 0.00 | 9.9 | 90.1 | 0.0 | -2.55 | 0.96 | 0.61 | 0.58 | — | 13140 | 1678 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 6oiK | 20079 | 2023-08-13 | 2019-04-09 | 3.6 | 3.73 | — | 3.6 | 0.009 | 1.06 | 0.0 | 0.06 | 14.77 | 0.01 | 1.986 | 8.48 | 1.04 | 6.4 | 93.6 | 0.0 | -3.68 | 0.70 | 0.78 | 2.74 | 3.6 | 0.003 | 0.75 | 0.0 | 0.05 | 15.55 | 0.00 | 2.042 | 13.60 | 1.04 | 3.3 | 96.7 | 0.0 | -0.43 | 0.62 | 0.70 | 0.82 | 1.75 | 8496 | 1125 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6Y92 | 10732 | 2023-08-14 | 2020-03-06 | 4.73 | 5.03 | — | 4.9 | 0.006 | 0.77 | 0.0 | 0.06 | 14.07 | 0.00 | 2.265 | 7.43 | 0.77 | 3.7 | 96.3 | 0.0 | -0.68 | 0.59 | 0.71 | — | 4.9 | 0.003 | 0.72 | 0.0 | 0.04 | 13.87 | 0.00 | 2.193 | 11.01 | 0.10 | 5.3 | 94.7 | 0.0 | -1.46 | 0.68 | 0.62 | 0.77 | — | 9497 | 1210 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 6QM5 | 4588 | 2023-08-12 | 2019-02-01 | 3.6 | 3.74 | 3.61 | 3.7 | 0.007 | 0.83 | 0.0 | 0.05 | 15.76 | 0.01 | 2.311 | 4.02 | 0.00 | 4.1 | 95.9 | 0.0 | -6.65 | 0.70 | 0.85 | 2.84 | 3.7 | 0.005 | 0.68 | 0.0 | 0.04 | 16.89 | 0.00 | 2.118 | 7.80 | 0.26 | 3.5 | 96.5 | 0.0 | -0.81 | 0.50 | 0.70 | 0.85 | 2.00 | 10874 | 1346 | 4 | 0 | 4 | 0 | 0 | logfile |