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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7T2G | 25612 | 2023-08-10 | 2021-12-04 | 2.5 | 1.71 | — | 1.4 | 0.009 | 1.14 | 0.0 | 0.05 | 12.09 | 0.01 | 2.214 | 13.39 | 1.00 | 3.5 | 96.5 | 0.0 | 0.61 | 0.80 | 0.81 | 5.15 | 1.4 | 0.004 | 0.81 | 0.0 | 0.04 | 15.33 | 0.00 | 2.126 | 11.11 | 1.57 | 2.7 | 97.3 | 0.0 | 0.65 | 0.36 | 0.80 | 0.81 | 4.61 | 6922 | 898 | 4 | 0 | 3 | 8 | 0 | logfile |
✔ | 7VZ4 | 32220 | 2023-08-12 | 2021-11-15 | 1.89 | 1.72 | — | 1.9 | 0.010 | 1.17 | 0.0 | 0.08 | 29.00 | 0.00 | 2.167 | 2.63 | 0.97 | 1.6 | 98.4 | 0.0 | 0.11 | 0.75 | 0.82 | 7.08 | 1.9 | 0.004 | 0.66 | 0.0 | 0.04 | 28.48 | 0.00 | 2.304 | 4.22 | 0.49 | 0.5 | 99.5 | 0.0 | 2.82 | 0.80 | 0.78 | 0.86 | 7.64 | 11843 | 746 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 8CPT | 16785 | 2023-08-23 | 2023-03-03 | 1.79 | 1.72 | 1.81 | 1.8 | 0.004 | 0.72 | 0.0 | 0.05 | 15.65 | 0.01 | 2.157 | 1.26 | 0.49 | 1.0 | 99.0 | 0.0 | 2.30 | 0.80 | 0.85 | 8.36 | 1.8 | 0.003 | 0.58 | 0.0 | 0.04 | 16.07 | 0.00 | 2.206 | 1.20 | 0.65 | 1.8 | 98.2 | 0.0 | 4.32 | 0.33 | 0.81 | 0.87 | 8.14 | 36024 | 4152 | 72 | 0 | 38 | 1906 | 0 | logfile |
✔ | 7M4Y | 23670 | 2023-08-23 | 2021-03-22 | 2.5 | 1.72 | — | 1.5 | 0.006 | 0.58 | 2.0 | 0.03 | 16.28 | 0.02 | 1.783 | 3.47 | 2.14 | 2.5 | 97.3 | 0.2 | 1.41 | 0.77 | 0.73 | 3.74 | 1.5 | 0.006 | 0.83 | 0.0 | 0.05 | 16.57 | 0.01 | 1.633 | 4.85 | 3.93 | 3.2 | 96.7 | 0.1 | 0.24 | 0.30 | 0.79 | 0.77 | 3.86 | 139817 | 5511 | 80 | 4453 | 200 | 1044 | 0 | logfile |
✔ | 7N8o | 24239 | 2023-08-10 | 2021-06-15 | 1.93 | 1.73 | — | 1.9 | 0.025 | 2.40 | 0.0 | 0.11 | 20.28 | 0.01 | 1.522 | 14.77 | 1.91 | 3.0 | 96.9 | 0.1 | 0.75 | 0.73 | 0.75 | 5.48 | 1.8 | 0.004 | 0.81 | 0.0 | 0.05 | 18.74 | 0.01 | 2.000 | 12.74 | 1.66 | 3.0 | 97.0 | 0.0 | 0.83 | 0.34 | 0.77 | 0.80 | 5.41 | 54656 | 5544 | 113 | 0 | 228 | 1236 | 0 | logfile |
✘ | 7A5V | 11657 | 2023-08-16 | 2020-08-22 | 1.7 | 1.73 | 1.69 | 1.8 | 0.014 | 1.60 | 0.0 | 0.09 | 13.75 | 0.02 | 0.000 | 2.35 | 0.48 | 2.2 | 97.8 | 0.0 | -0.05 | 0.61 | 0.79 | 6.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21155 | 2275 | 30 | 0 | 85 | 1015 | 0 | logfile |
✔ | 8CPV | 16787 | 2023-08-23 | 2023-03-03 | 1.76 | 1.73 | 1.80 | 1.7 | 0.006 | 0.91 | 0.0 | 0.07 | 14.41 | 0.01 | 2.182 | 2.58 | 0.00 | 1.0 | 99.0 | 0.0 | 2.15 | 0.78 | 0.84 | 8.93 | 1.7 | 0.002 | 0.49 | 0.0 | 0.03 | 14.99 | 0.00 | 2.274 | 3.00 | 0.00 | 1.8 | 98.2 | 0.0 | 4.87 | 1.19 | 0.81 | 0.87 | 8.51 | 35855 | 4152 | 72 | 0 | 38 | 1737 | 0 | logfile |
✔ | 7QKW | 14055 | 2023-08-09 | 2021-12-19 | 2.32 | 1.74 | 2.60 | 2.3 | 0.010 | 1.93 | 1.0 | 0.10 | 13.53 | 0.01 | 2.534 | 0.00 | 0.00 | 5.4 | 94.6 | 0.0 | -2.79 | 0.41 | 0.81 | 7.02 | 2.3 | 0.002 | 0.50 | 0.0 | 0.05 | 16.64 | 0.00 | 2.420 | 1.91 | 2.54 | 4.4 | 95.6 | 0.0 | -2.76 | 1.36 | 0.41 | 0.84 | 5.96 | 4707 | 306 | 6 | 0 | 0 | 0 | 2439 | logfile |
✔ | 8CEU | 16613 | 2023-08-22 | 2023-02-02 | 1.83 | 1.74 | 1.82 | 1.7 | 0.009 | 1.57 | 16.0 | 0.11 | 13.99 | 0.03 | 1.830 | 0.53 | 0.65 | 2.7 | 97.2 | 0.0 | -1.11 | 0.79 | 0.85 | 6.99 | 1.7 | 0.005 | 0.94 | 16.0 | 0.05 | 14.24 | 0.01 | 1.796 | 4.66 | 0.33 | 1.9 | 98.0 | 0.0 | -0.28 | 0.77 | 0.84 | 0.89 | 6.85 | 92838 | 3076 | 79 | 2872 | 304 | 6830 | 0 | logfile |
✔ | 7M4W | 23668 | 2023-08-21 | 2021-03-22 | 2.55 | 1.74 | — | 1.6 | 0.006 | 0.55 | 0.0 | 0.03 | 14.99 | 0.01 | 1.760 | 3.08 | 0.02 | 2.8 | 97.0 | 0.2 | 1.38 | 0.77 | 0.74 | 3.81 | 1.5 | 0.008 | 0.91 | 0.0 | 0.05 | 16.20 | 0.01 | 1.616 | 5.11 | 2.58 | 3.6 | 96.3 | 0.1 | 0.19 | 0.91 | 0.80 | 0.77 | 3.77 | 137923 | 5518 | 76 | 4373 | 195 | 797 | 0 | logfile |
✔ | 7M4X | 23669 | 2023-08-23 | 2021-03-22 | 2.66 | 1.75 | — | 1.6 | 0.006 | 0.56 | 0.0 | 0.03 | 15.11 | 0.01 | 1.789 | 3.62 | 0.00 | 2.5 | 97.4 | 0.1 | 1.32 | 0.77 | 0.73 | 3.46 | 1.6 | 0.004 | 0.72 | 0.0 | 0.04 | 16.10 | 0.01 | 1.684 | 5.41 | 2.69 | 3.2 | 96.7 | 0.1 | 0.26 | 0.35 | 0.79 | 0.76 | 3.35 | 139446 | 5528 | 73 | 4453 | 194 | 552 | 0 | logfile |
✔ | 7VD9 | 31911 | 2023-08-14 | 2021-09-06 | 2.29 | 1.75 | 2.28 | 1.8 | 0.002 | 0.54 | 0.0 | 0.04 | 17.25 | 0.00 | 2.194 | 7.80 | 2.33 | 3.8 | 96.2 | 0.0 | 0.41 | 0.58 | 0.72 | 3.68 | 1.8 | 0.003 | 0.57 | 0.0 | 0.04 | 17.52 | 0.01 | 2.206 | 7.90 | 2.62 | 3.9 | 96.1 | 0.0 | 0.00 | 0.30 | 0.58 | 0.73 | 3.61 | 16426 | 1991 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 8ooS | 17027 | 2023-08-12 | 2023-04-05 | 3.29 | 1.76 | 3.20 | 3.1 | 0.007 | 1.29 | 0.0 | 0.05 | 24.89 | 0.01 | 1.879 | 4.57 | 0.00 | 3.2 | 96.8 | 0.0 | -2.38 | 0.71 | 0.73 | 2.66 | 3.1 | 0.004 | 0.80 | 0.0 | 0.04 | 25.73 | 0.00 | 1.975 | 9.92 | 0.12 | 3.2 | 96.8 | 0.0 | 0.79 | 1.61 | 0.74 | 0.74 | 1.54 | 12307 | 966 | 10 | 217 | 3 | 0 | 0 | logfile |
✔ | 7EFC | 31083 | 2023-08-09 | 2021-03-21 | 1.7 | 1.76 | 1.76 | 1.9 | 0.032 | 3.16 | 16.0 | 0.09 | 15.03 | 0.02 | 0.001 | 2.15 | 2.15 | 2.5 | 96.6 | 0.8 | -0.84 | 0.75 | 0.84 | 6.42 | 1.9 | 0.003 | 0.69 | 0.0 | 0.04 | 14.60 | 0.00 | 1.907 | 5.77 | 0.54 | 2.5 | 97.5 | 0.0 | 0.68 | 0.91 | 0.80 | 0.85 | 5.94 | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✔ | 7UUR | 26801 | 2023-08-13 | 2022-04-28 | 1.67 | 1.76 | 1.67 | 1.8 | 0.061 | 2.45 | 3.0 | 0.98 | 14.57 | 0.01 | 1.674 | 7.19 | 0.44 | 2.5 | 97.2 | 0.2 | -0.89 | 0.76 | 0.87 | 7.87 | 1.8 | 0.007 | 2.49 | 0.0 | 0.07 | 14.70 | 0.01 | 1.611 | 10.87 | 0.29 | 2.1 | 97.9 | 0.0 | 0.19 | 0.27 | 0.77 | 0.88 | 7.79 | 13683 | 1668 | 12 | 0 | 18 | 603 | 0 | logfile |
✔ | 8CAi | 16526 | 2023-08-24 | 2023-01-24 | 2.08 | 1.77 | 1.93 | 1.9 | 0.014 | 1.53 | 2.0 | 0.14 | 13.98 | 0.03 | 1.839 | 0.59 | 0.86 | 3.7 | 96.2 | 0.1 | -1.66 | 0.65 | 0.81 | 5.19 | 1.9 | 0.005 | 0.84 | 0.0 | 0.05 | 14.26 | 0.01 | 1.790 | 7.42 | 1.41 | 3.0 | 97.0 | 0.0 | 0.45 | 1.58 | 0.74 | 0.85 | 4.96 | 37814 | 1552 | 33 | 1114 | 90 | 1416 | 0 | logfile |
✔ | 7EFD | 31084 | 2023-08-09 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.47 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | 1.9 | 0.004 | 0.74 | 0.0 | 0.05 | 14.91 | 0.00 | 1.834 | 7.38 | 0.00 | 3.4 | 96.0 | 0.6 | 0.90 | 0.55 | 0.80 | 0.84 | 6.49 | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✔ | 7RCV | 24407 | 2023-08-10 | 2021-07-08 | 2.01 | 1.78 | — | 1.9 | 0.024 | 2.38 | 0.0 | 0.11 | 20.31 | 0.01 | 1.915 | 13.94 | 1.99 | 2.6 | 97.4 | 0.0 | 0.92 | 0.78 | 0.79 | 5.10 | 1.9 | 0.007 | 0.98 | 0.0 | 0.06 | 19.24 | 0.01 | 1.984 | 13.17 | 1.79 | 3.0 | 97.0 | 0.0 | 0.41 | 0.91 | 0.81 | 0.84 | 5.30 | 54656 | 5544 | 114 | 0 | 228 | 1236 | 0 | logfile |
✔ | 7M4U | 23666 | 2023-08-09 | 2021-03-22 | 2.71 | 1.78 | — | 1.6 | 0.006 | 0.58 | 2.0 | 0.04 | 14.94 | 0.02 | 1.771 | 4.42 | 0.20 | 3.1 | 96.7 | 0.2 | 1.08 | 0.79 | 0.76 | 3.70 | 1.6 | 0.004 | 0.76 | 0.0 | 0.04 | 16.09 | 0.01 | 1.732 | 5.99 | 2.36 | 3.6 | 96.2 | 0.2 | 0.59 | 1.72 | 0.82 | 0.81 | 3.40 | 51764 | 2386 | 27 | 1528 | 84 | 191 | 0 | logfile |
✔ | 7o6E | 12738 | 2023-08-23 | 2021-04-10 | 2.1 | 1.78 | 2.15 | 1.6 | 0.017 | 1.10 | 0.0 | 0.07 | 18.13 | 0.01 | 2.110 | 3.49 | 0.00 | 2.3 | 97.7 | 0.0 | 2.10 | 0.87 | 0.88 | 6.02 | 1.6 | 0.003 | 0.47 | 0.0 | 0.03 | 18.14 | 0.00 | 2.203 | 3.42 | 0.38 | 0.7 | 99.3 | 0.0 | 4.41 | 0.27 | 0.88 | 0.90 | 5.26 | 35304 | 4248 | 48 | 0 | 0 | 1392 | 0 | logfile |