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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8iPR | 35641 | 2023-08-13 | 2023-03-14 | 3.0 | 3.90 | 2.97 | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 16.11 | 0.00 | 1.978 | 11.32 | 0.13 | 5.9 | 94.0 | 0.1 | 1.55 | 0.72 | 0.81 | 1.76 | 3.4 | 0.003 | 0.68 | 0.0 | 0.04 | 16.25 | 0.00 | 1.926 | 7.60 | 2.40 | 5.2 | 94.8 | 0.0 | 2.08 | 0.54 | 0.72 | 0.89 | 1.27 | 14894 | 2038 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 8JD5 | 36176 | 2023-08-15 | 2023-05-12 | 3.6 | 3.48 | — | 3.5 | 0.005 | 0.63 | 1.0 | 0.04 | 12.91 | 0.00 | 2.201 | 9.27 | 0.39 | 6.7 | 93.2 | 0.1 | -0.84 | 0.62 | 0.68 | 1.58 | 3.5 | 0.004 | 0.67 | 0.0 | 0.04 | 15.28 | 0.00 | 2.138 | 10.35 | 0.22 | 7.9 | 92.1 | 0.0 | -0.92 | 0.58 | 0.69 | 0.74 | 1.88 | 18028 | 2389 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 7YRY | 34066 | 2023-08-18 | 2022-08-11 | 3.0 | 2.80 | 2.85 | 2.9 | 0.002 | 0.54 | 0.0 | 0.04 | 17.65 | 0.00 | 2.041 | 5.87 | 3.35 | 2.5 | 97.5 | 0.0 | 0.38 | 0.86 | 0.88 | 2.67 | 3.0 | 0.005 | 0.62 | 0.0 | 0.05 | 17.76 | 0.00 | 1.867 | 7.06 | 4.23 | 4.1 | 95.9 | 0.0 | 0.35 | 0.23 | 0.86 | 0.89 | 2.71 | 25056 | 3282 | 13 | 0 | 9 | 0 | 0 | logfile |
✔ | 8SZA | 40905 | 2023-08-09 | 2023-05-29 | 2.75 | 3.32 | 2.81 | 3.4 | 0.003 | 0.65 | 0.0 | 0.03 | 14.83 | 0.00 | 2.185 | 8.19 | 0.98 | 0.3 | 99.7 | 0.0 | 2.12 | 0.50 | 0.78 | 1.28 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.68 | 0.00 | 2.280 | 8.99 | 2.16 | 0.7 | 99.3 | 0.0 | 2.68 | 0.49 | 0.50 | 0.78 | 1.33 | 4800 | 606 | 11 | 0 | 6 | 0 | 0 | logfile |
✔ | 8EoN | 28405 | 2023-08-23 | 2022-10-03 | 3.6 | 3.31 | 3.96 | 3.2 | 0.009 | 0.76 | 1.0 | 0.05 | 13.95 | 0.01 | 1.812 | 13.47 | 0.02 | 10.1 | 89.5 | 0.4 | -1.79 | 0.49 | 0.72 | 1.78 | 3.2 | 0.006 | 0.67 | 1.0 | 0.05 | 16.06 | 0.01 | 1.822 | 12.71 | 0.30 | 8.9 | 90.7 | 0.4 | -1.87 | 1.20 | 0.49 | 0.73 | 1.46 | 95688 | 12711 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DJo | 7938 | 2023-08-12 | 2018-05-25 | 3.6 | 3.75 | — | 3.7 | 0.009 | 0.94 | 0.0 | 0.06 | 10.85 | 0.01 | 2.053 | 6.86 | 0.96 | 4.9 | 95.1 | 0.0 | -4.76 | 0.69 | 0.84 | 3.42 | 3.6 | 0.004 | 0.68 | 0.0 | 0.05 | 14.87 | 0.00 | 1.883 | 8.84 | 0.24 | 5.0 | 95.0 | 0.0 | -1.60 | 2.19 | 0.70 | 0.85 | 2.73 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 8SA4 | 40264 | 2023-08-09 | 2023-03-31 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5193 | 0 | 3 | 236 | 1 | 0 | 0 | logfile |
✘ | 7YSW | 34084 | 2023-08-12 | 2022-08-13 | 3.03 | 3.51 | 3.06 | 3.4 | 0.007 | 1.01 | 0.0 | 0.20 | 16.78 | 0.00 | 1.948 | 10.59 | 4.77 | 6.4 | 93.6 | 0.0 | -1.74 | 0.76 | 0.80 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12407 | 1517 | 7 | 0 | 12 | 0 | 0 | logfile |
✘ | 8i5B | 35193 | 2023-08-13 | 2023-01-24 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13440 | 1563 | 8 | 0 | 30 | 0 | 0 | logfile |
✔ | 8SZB | 40907 | 2023-08-09 | 2023-05-29 | 3.07 | 3.36 | 3.01 | 3.5 | 0.003 | 0.51 | 0.0 | 0.03 | 16.92 | 0.00 | 2.154 | 9.22 | 0.37 | 1.5 | 98.5 | 0.0 | 2.06 | 0.49 | 0.73 | 0.50 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 17.63 | 0.00 | 2.065 | 8.54 | 0.00 | 1.8 | 98.2 | 0.0 | 4.01 | 0.70 | 0.51 | 0.79 | 1.65 | 4962 | 612 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 7Y1L | 33565 | 2023-08-11 | 2022-06-08 | 3.73 | 3.98 | 3.74 | 3.9 | 0.005 | 0.59 | 0.0 | 0.04 | 11.09 | 0.00 | 2.202 | 8.44 | 1.03 | 1.8 | 98.2 | 0.0 | 2.57 | 0.64 | 0.85 | 1.27 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 14.03 | 0.00 | 2.016 | 9.74 | 0.11 | 1.3 | 98.7 | 0.0 | 2.50 | 0.48 | 0.64 | 0.85 | 0.87 | 8955 | 1189 | 1 | 0 | 5 | 0 | 0 | logfile |
✔ | 8DE4 | 27384 | 2023-08-09 | 2022-06-19 | 2.9 | 3.20 | 2.90 | 3.3 | 0.009 | 0.79 | 0.0 | 0.23 | 17.18 | 0.01 | 2.096 | 10.13 | 4.35 | 3.0 | 97.0 | 0.0 | 0.28 | 0.50 | 0.66 | 1.62 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 17.16 | 0.00 | 2.190 | 11.35 | 6.68 | 5.9 | 94.1 | 0.0 | -0.34 | 0.88 | 0.52 | 0.69 | 1.89 | 6188 | 767 | 5 | 0 | 9 | 0 | 0 | logfile |
✘ | 8GA8 | 29892 | 2023-08-17 | 2023-02-22 | 3.5 | 3.70 | 3.49 | 3.7 | 0.003 | 0.54 | 0.0 | 0.04 | 17.43 | 0.00 | 2.028 | 11.33 | 0.33 | 2.6 | 97.4 | 0.0 | 0.98 | 0.70 | 0.69 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22011 | 2675 | 12 | 0 | 2 | 0 | 0 | logfile |
✔ | 7PKQ | 13477 | 2023-08-16 | 2021-08-26 | 4.2 | 4.26 | 4.62 | 4.1 | 0.009 | 1.42 | 20.0 | 0.08 | 17.46 | 0.01 | 2.123 | 9.00 | 0.89 | 6.0 | 93.8 | 0.3 | -2.71 | 0.63 | 0.61 | — | 4.1 | 0.004 | 0.77 | 0.0 | 0.04 | 16.90 | 0.01 | 2.009 | 20.76 | 0.03 | 7.7 | 92.2 | 0.1 | -1.22 | 0.90 | 0.65 | 0.66 | — | 70313 | 4968 | 44 | 1114 | 1722 | 0 | 0 | logfile |
✔ | 7YDP | 33755 | 2023-08-10 | 2022-07-04 | 3.1 | 2.36 | 3.18 | 2.1 | 0.005 | 0.73 | 0.0 | 0.05 | 12.57 | 0.00 | 2.123 | 11.85 | 0.00 | 5.2 | 94.8 | 0.0 | -1.21 | 0.68 | 0.65 | 1.63 | 2.1 | 0.003 | 0.65 | 0.0 | 0.04 | 14.59 | 0.00 | 2.168 | 10.22 | 0.23 | 4.9 | 95.1 | 0.0 | 0.01 | 0.40 | 0.69 | 0.66 | 1.23 | 8028 | 1022 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QJQ | 4566 | 2023-08-09 | 2019-01-24 | 3.7 | 3.99 | 2.14 | 4.1 | 0.021 | 1.17 | 0.0 | 0.11 | 13.36 | 0.01 | 2.499 | 5.58 | 0.00 | 4.0 | 94.0 | 2.0 | -4.41 | 0.39 | 0.75 | 2.60 | 4.1 | 0.005 | 0.77 | 0.0 | 0.05 | 14.41 | 0.00 | 2.276 | 11.56 | 0.00 | 6.0 | 94.0 | 0.0 | -2.81 | 1.25 | 0.37 | 0.75 | 2.23 | 1218 | 162 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U16 | 26279 | 2023-08-09 | 2022-02-19 | 2.7 | 3.30 | — | 3.5 | 0.004 | 0.62 | 0.0 | 0.06 | 12.93 | 0.00 | 2.310 | 8.58 | 0.00 | 6.8 | 93.2 | 0.0 | -2.67 | 0.29 | 0.68 | 2.62 | 3.5 | 0.003 | 0.57 | 0.0 | 0.06 | 15.61 | 0.00 | 2.200 | 6.25 | 1.84 | 6.5 | 93.5 | 0.0 | -2.62 | 1.74 | 0.36 | 0.80 | 5.02 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7RoE | 24593 | 2023-08-20 | 2021-07-30 | 3.7 | 3.80 | — | 3.5 | 0.006 | 0.69 | 0.0 | 0.04 | 12.63 | 0.01 | 2.266 | 11.99 | 4.00 | 6.7 | 93.3 | 0.0 | 1.70 | 0.67 | 0.86 | 1.96 | 3.5 | 0.004 | 0.73 | 0.0 | 0.04 | 14.52 | 0.01 | 2.191 | 10.10 | 0.58 | 5.7 | 94.2 | 0.1 | 3.40 | 0.52 | 0.67 | 0.85 | 1.77 | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 8P83 | 17540 | 2023-08-23 | 2023-05-31 | 3.87 | 4.82 | 3.91 | 3.8 | 0.003 | 0.66 | 3.0 | 0.06 | 4.70 | 0.00 | 2.470 | 0.84 | 0.00 | 2.0 | 97.9 | 0.1 | 0.35 | 0.81 | 0.58 | — | 3.8 | 0.003 | 0.79 | 0.0 | 0.04 | 5.70 | 0.01 | 2.230 | 9.10 | 0.00 | 7.0 | 93.0 | 0.0 | -1.97 | 2.83 | 0.85 | 0.58 | — | 35656 | 7036 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iPS | 35642 | 2023-08-11 | 2023-03-14 | 3.6 | 3.89 | 3.62 | 3.8 | 0.005 | 0.70 | 0.0 | 0.04 | 18.31 | 0.01 | 2.221 | 8.07 | 0.21 | 7.6 | 92.4 | 0.0 | 0.29 | 0.75 | 0.82 | 1.33 | 3.8 | 0.003 | 0.61 | 0.0 | 0.04 | 18.75 | 0.00 | 2.201 | 6.05 | 0.32 | 6.8 | 93.1 | 0.1 | 0.80 | 1.42 | 0.73 | 0.82 | 1.10 | 9071 | 1161 | 3 | 0 | 1 | 0 | 0 | logfile |