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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7SK3 | 25171 | 2023-08-13 | 2021-10-19 | 3.8 | 4.06 | — | 4.0 | 0.005 | 0.68 | 0.0 | 0.07 | 13.73 | 0.00 | 2.143 | 5.05 | 0.00 | 5.0 | 95.0 | 0.0 | 0.15 | 0.69 | 0.82 | 2.20 | 4.0 | 0.003 | 0.49 | 0.0 | 0.04 | 14.81 | 0.00 | 2.111 | 7.69 | 0.00 | 4.4 | 95.6 | 0.0 | 0.33 | 0.36 | 0.69 | 0.82 | 1.67 | 13294 | 831 | 7 | 0 | 8 | 0 | 6491 | logfile |
✔ | 7RBT | 24401 | 2023-08-12 | 2021-07-06 | 3.08 | 2.86 | — | 2.9 | 0.007 | 0.76 | 0.0 | 0.05 | 14.73 | 0.00 | 2.093 | 18.60 | 0.70 | 9.1 | 90.9 | 0.0 | -2.82 | 0.59 | 0.76 | 2.17 | 3.0 | 0.004 | 0.75 | 0.0 | 0.04 | 16.65 | 0.00 | 2.134 | 12.58 | 0.26 | 4.4 | 95.6 | 0.0 | -0.87 | 0.49 | 0.59 | 0.77 | 2.09 | 10881 | 1386 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 7UUR | 26801 | 2023-08-13 | 2022-04-28 | 1.67 | 1.76 | 1.67 | 1.8 | 0.061 | 2.45 | 3.0 | 0.98 | 14.57 | 0.01 | 1.674 | 7.19 | 0.44 | 2.5 | 97.2 | 0.2 | -0.89 | 0.76 | 0.87 | 7.87 | 1.8 | 0.007 | 2.49 | 0.0 | 0.07 | 14.70 | 0.01 | 1.611 | 10.87 | 0.29 | 2.1 | 97.9 | 0.0 | 0.19 | 0.27 | 0.77 | 0.88 | 7.79 | 13683 | 1668 | 12 | 0 | 18 | 603 | 0 | logfile |
✔ | 6SGT | 10184 | 2023-08-27 | 2019-08-05 | 3.46 | 3.54 | 3.37 | 3.5 | 0.004 | 0.72 | 0.0 | 0.04 | 12.56 | 0.00 | 2.205 | 8.28 | 0.29 | 4.5 | 95.4 | 0.1 | -4.71 | 0.65 | 0.79 | 2.46 | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 15.39 | 0.00 | 1.861 | 8.95 | 0.44 | 5.0 | 95.0 | 0.0 | -0.76 | 2.29 | 0.67 | 0.83 | 2.15 | 52180 | 3408 | 5 | 0 | 0 | 0 | 26299 | logfile |
✔ | 8D44 | 27174 | 2023-08-11 | 2022-06-01 | 2.8 | 3.00 | 2.84 | 3.0 | 0.004 | 0.63 | 0.0 | 0.04 | 16.99 | 0.01 | 2.232 | 6.47 | 1.73 | 5.7 | 94.3 | 0.0 | 0.38 | 0.71 | 0.81 | 3.53 | 3.0 | 0.003 | 0.56 | 0.0 | 0.04 | 17.54 | 0.00 | 2.213 | 8.04 | 1.91 | 5.5 | 94.5 | 0.0 | 1.22 | 1.09 | 0.68 | 0.81 | 3.11 | 10472 | 1372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ToV | 26039 | 2023-08-17 | 2022-01-24 | 3.16 | 3.39 | — | 3.2 | 0.014 | 1.80 | 5.0 | 0.10 | 12.74 | 0.01 | 2.515 | 0.07 | 0.89 | 5.8 | 93.7 | 0.4 | -0.81 | 0.83 | 0.86 | 4.13 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 13.51 | 0.00 | 2.019 | 4.32 | 0.00 | 4.0 | 95.9 | 0.1 | 0.38 | 0.52 | 0.85 | 0.88 | 3.34 | 23199 | 2983 | 18 | 0 | 58 | 0 | 0 | logfile |
✔ | 7K9J | 22750 | 2023-08-20 | 2020-09-29 | 3.0 | 3.59 | 3.08 | 3.5 | 0.005 | 0.84 | 1.0 | 0.06 | 13.02 | 0.01 | 2.084 | 8.81 | 0.57 | 3.8 | 96.2 | 0.0 | -0.88 | 0.73 | 0.78 | 2.65 | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 14.92 | 0.00 | 2.084 | 8.26 | 1.14 | 3.9 | 96.1 | 0.0 | -0.53 | 0.46 | 0.73 | 0.80 | 2.25 | 29766 | 3627 | 54 | 0 | 111 | 0 | 0 | logfile |
✔ | 6VRA | 21365 | 2023-08-10 | 2020-02-07 | 3.3 | 3.58 | — | 3.4 | 0.008 | 1.03 | 4.0 | 0.06 | 15.67 | 0.01 | 2.214 | 6.31 | 0.80 | 8.5 | 91.5 | 0.0 | -3.93 | 0.84 | 0.85 | 2.53 | 3.4 | 0.004 | 0.61 | 0.0 | 0.04 | 16.39 | 0.00 | 2.130 | 9.95 | 0.09 | 6.1 | 93.9 | 0.0 | -1.05 | 0.49 | 0.83 | 0.86 | 2.31 | 57744 | 7208 | 20 | 0 | 16 | 0 | 0 | logfile |
✔ | 6oWo | 20215 | 2023-08-13 | 2019-05-10 | 3.2 | 3.34 | 3.21 | 3.3 | 0.009 | 0.99 | 0.0 | 0.05 | 9.50 | 0.01 | 2.261 | 3.86 | 0.25 | 3.3 | 96.6 | 0.1 | -4.78 | 0.82 | 0.87 | 3.33 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 13.39 | 0.00 | 2.217 | 7.40 | 0.19 | 2.8 | 97.1 | 0.1 | 0.99 | 1.34 | 0.82 | 0.87 | 2.39 | 14276 | 1786 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DKE | 27488 | 2023-08-09 | 2022-07-05 | 3.18 | 3.43 | 3.12 | 3.4 | 0.003 | 0.74 | 2.0 | 0.05 | 14.40 | 0.01 | 2.179 | 7.36 | 0.83 | 6.2 | 93.8 | 0.0 | -0.95 | 0.57 | 0.85 | 3.68 | 3.5 | 0.002 | 0.54 | 0.0 | 0.04 | 15.62 | 0.00 | 2.252 | 5.75 | 0.62 | 5.3 | 94.7 | 0.0 | 0.23 | 0.30 | 0.57 | 0.85 | 3.23 | 4369 | 553 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UZD | 20957 | 2023-08-25 | 2019-11-14 | 3.4 | 3.56 | — | 3.4 | 0.007 | 0.84 | 0.0 | 0.06 | 15.38 | 0.01 | 2.258 | 6.10 | 0.31 | 5.7 | 94.3 | 0.0 | -4.30 | 0.77 | 0.84 | 2.82 | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 16.02 | 0.00 | 2.166 | 8.42 | 0.10 | 4.4 | 95.6 | 0.0 | -1.32 | 0.46 | 0.77 | 0.85 | 2.46 | 42822 | 5374 | 16 | 0 | 14 | 0 | 0 | logfile |
✔ | 7TF8 | 25865 | 2023-08-18 | 2022-01-06 | 3.36 | 3.60 | 3.29 | 3.4 | 0.005 | 0.78 | 0.0 | 0.06 | 12.07 | 0.01 | 2.280 | 2.75 | 0.07 | 3.4 | 96.6 | 0.0 | -0.90 | 0.85 | 0.85 | 2.93 | 3.4 | 0.004 | 0.55 | 0.0 | 0.04 | 13.33 | 0.00 | 2.116 | 5.84 | 0.11 | 4.0 | 96.0 | 0.0 | 0.00 | 0.32 | 0.86 | 0.88 | 2.68 | 25732 | 3153 | 22 | 0 | 78 | 0 | 0 | logfile |
✔ | 7SV7 | 25445 | 2023-08-11 | 2021-11-18 | 3.8 | 3.26 | — | 3.9 | 0.004 | 1.02 | 0.0 | 0.04 | 12.31 | 0.00 | 2.003 | 1.99 | 0.69 | 2.2 | 97.8 | 0.0 | -0.82 | 0.60 | 0.81 | 2.35 | 3.9 | 0.002 | 0.55 | 0.0 | 0.04 | 15.41 | 0.00 | 1.999 | 5.52 | 0.30 | 2.5 | 97.5 | 0.0 | 1.05 | 0.59 | 0.61 | 0.81 | 1.47 | 9673 | 1173 | 3 | 0 | 32 | 0 | 0 | logfile |
✔ | 7ZJ6 | 14742 | 2023-08-12 | 2022-04-08 | 2.6 | 2.32 | 2.61 | 2.6 | 0.013 | 1.77 | 0.0 | 0.09 | 14.90 | 0.01 | 2.524 | 1.04 | 0.46 | 3.9 | 96.1 | 0.0 | -1.99 | 0.67 | 0.82 | 4.01 | 2.6 | 0.003 | 0.60 | 0.0 | 0.04 | 16.50 | 0.00 | 2.215 | 3.90 | 2.01 | 2.1 | 97.9 | 0.0 | 0.28 | 0.51 | 0.71 | 0.84 | 3.77 | 12282 | 1482 | 18 | 0 | 48 | 0 | 0 | logfile |
✔ | 7ooA | 13008 | 2023-08-14 | 2021-05-27 | 2.7 | 2.63 | 2.63 | 2.6 | 0.005 | 0.66 | 0.0 | 0.05 | 15.27 | 0.00 | 2.256 | 5.81 | 0.00 | 0.4 | 99.6 | 0.0 | 2.71 | 0.71 | 0.86 | 4.30 | 2.6 | 0.003 | 0.47 | 0.0 | 0.04 | 16.81 | 0.00 | 2.229 | 5.62 | 0.81 | 1.2 | 98.8 | 0.0 | 1.78 | 1.11 | 0.70 | 0.88 | 3.88 | 15610 | 1834 | 14 | 0 | 35 | 0 | 0 | logfile |
✔ | 7ToU | 26038 | 2023-08-18 | 2022-01-24 | 3.24 | 3.49 | — | 3.3 | 0.014 | 1.82 | 8.0 | 0.11 | 13.56 | 0.01 | 2.517 | 0.18 | 1.20 | 6.2 | 93.2 | 0.7 | -1.00 | 0.84 | 0.85 | 3.52 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 14.04 | 0.00 | 2.134 | 5.38 | 0.04 | 4.2 | 95.7 | 0.0 | 0.51 | 0.57 | 0.85 | 0.87 | 2.72 | 24687 | 3050 | 20 | 0 | 61 | 0 | 0 | logfile |
✔ | 5oYB | 3860 | 2023-08-12 | 2017-09-08 | 3.75 | 3.87 | 3.90 | 3.8 | 0.007 | 1.18 | 8.0 | 0.10 | 12.85 | 0.01 | 1.771 | 8.87 | 3.12 | 7.6 | 92.4 | 0.0 | -3.98 | 0.65 | 0.84 | 2.44 | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 15.47 | 0.00 | 2.160 | 9.67 | 0.47 | 5.3 | 94.7 | 0.0 | 0.72 | 1.73 | 0.66 | 0.82 | 1.61 | 11770 | 1436 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7ToZ | 26042 | 2023-08-18 | 2022-01-24 | 4.07 | 4.80 | — | 4.0 | 0.014 | 1.84 | 11.0 | 0.10 | 15.16 | 0.02 | 2.509 | 0.68 | 2.87 | 8.7 | 90.4 | 0.8 | -1.96 | 0.85 | 0.79 | — | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 13.43 | 0.00 | 2.095 | 13.67 | 0.00 | 7.1 | 92.8 | 0.1 | -0.56 | 0.58 | 0.85 | 0.80 | — | 24470 | 3026 | 20 | 0 | 60 | 0 | 0 | logfile |
✔ | 7TAP | 25780 | 2023-08-17 | 2021-12-21 | 2.8 | 3.00 | — | 3.0 | 0.013 | 1.47 | 4.0 | 0.07 | 14.58 | 0.01 | 2.225 | 8.19 | 1.37 | 1.3 | 98.6 | 0.1 | 0.26 | 0.64 | 0.81 | 3.41 | 3.0 | 0.003 | 0.51 | 0.0 | 0.04 | 15.70 | 0.00 | 2.134 | 9.69 | 1.07 | 1.2 | 98.8 | 0.0 | 1.69 | 1.51 | 0.67 | 0.84 | 3.30 | 22520 | 2915 | 22 | 0 | 8 | 0 | 0 | logfile |
✔ | 6UZB | 20955 | 2023-08-23 | 2019-11-14 | 3.2 | 3.41 | — | 3.3 | 0.010 | 0.92 | 2.0 | 0.06 | 15.21 | 0.01 | 2.236 | 7.09 | 0.84 | 6.3 | 93.6 | 0.0 | -3.78 | 0.83 | 0.86 | 3.53 | 3.3 | 0.006 | 0.61 | 0.0 | 0.05 | 15.61 | 0.00 | 2.132 | 8.21 | 0.14 | 5.0 | 95.0 | 0.0 | -1.18 | 0.46 | 0.81 | 0.87 | 2.98 | 36951 | 4654 | 15 | 0 | 14 | 0 | 0 | logfile |