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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7NJ1 | 12369 | 2023-08-12 | 2021-02-14 | 2.9 | 2.23 | — | 1.9 | 0.005 | 0.70 | 1.0 | 0.05 | 13.54 | 0.00 | 2.211 | 9.26 | 1.09 | 7.4 | 92.4 | 0.2 | -2.39 | 0.75 | 0.73 | 2.14 | 1.9 | 0.004 | 0.76 | 0.0 | 0.04 | 16.51 | 0.00 | 2.141 | 11.13 | 1.36 | 6.1 | 93.7 | 0.1 | 0.95 | 0.58 | 0.77 | 0.76 | 1.93 | 11096 | 1501 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7F63 | 31471 | 2023-08-09 | 2021-06-24 | 3.9 | 4.20 | — | 4.0 | 0.002 | 0.58 | 0.0 | 0.04 | 13.34 | 0.00 | 2.136 | 12.60 | 0.00 | 8.3 | 91.4 | 0.2 | -2.31 | 0.63 | 0.62 | 1.27 | 4.0 | 0.003 | 0.85 | 0.0 | 0.05 | 15.96 | 0.00 | 2.134 | 18.07 | 0.54 | 10.0 | 89.5 | 0.5 | -2.84 | 1.79 | 0.65 | 0.69 | 1.81 | 3375 | 429 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oGi | 20058 | 2023-08-27 | 2019-04-02 | 3.4 | 4.58 | — | 2.9 | 0.009 | 1.11 | 0.0 | 0.09 | 14.54 | 0.01 | 2.042 | 15.67 | 0.49 | 10.3 | 89.0 | 0.7 | -4.74 | 0.90 | 0.82 | 1.06 | 3.0 | 0.006 | 0.71 | 0.0 | 0.04 | 16.77 | 0.00 | 1.962 | 29.15 | 0.74 | 11.0 | 88.9 | 0.1 | -2.39 | 1.55 | 0.92 | 0.86 | 0.72 | 144895 | 5752 | 54 | 4656 | 0 | 0 | 0 | logfile |
✔ | 7Z4K | 14500 | 2023-08-13 | 2022-03-04 | 3.81 | 4.83 | 3.89 | 3.9 | 0.003 | 0.44 | 0.0 | 0.03 | 14.82 | 0.00 | 2.200 | 9.44 | 0.99 | 2.4 | 97.6 | 0.0 | 1.12 | 0.85 | 0.75 | 0.54 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 16.91 | 0.00 | 2.146 | 21.08 | 0.25 | 4.4 | 95.6 | 0.0 | 0.02 | 1.90 | 0.88 | 0.80 | 0.62 | 14005 | 1360 | 4 | 138 | 0 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2023-08-09 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 9.8 | 0.003 | 0.63 | 0.0 | 0.03 | 15.97 | 0.00 | 2.424 | 6.03 | 0.00 | 6.2 | 93.8 | 0.0 | -0.13 | 1.31 | 0.27 | 0.05 | 0.48 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 7ASN | 11901 | 2023-08-20 | 2020-10-27 | 2.73 | 4.10 | — | 3.0 | 0.008 | 1.05 | 0.0 | 0.05 | 18.87 | 0.01 | 1.953 | 13.53 | 0.48 | 11.3 | 88.6 | 0.1 | -3.27 | 0.46 | 0.23 | -0.03 | 2.3 | 0.006 | 0.89 | 0.0 | 0.04 | 19.17 | 0.01 | 1.970 | 31.49 | 5.72 | 10.6 | 89.4 | 0.0 | -2.45 | 2.02 | 0.87 | 0.80 | 1.34 | 80694 | 2545 | 25 | 2848 | 0 | 0 | 0 | logfile |
✔ | 7D4G | 30573 | 2023-08-09 | 2020-09-23 | 3.9 | 4.13 | — | 4.1 | 0.006 | 1.06 | 1.0 | 0.06 | 9.87 | 0.01 | 1.917 | 36.47 | 0.00 | 10.7 | 88.9 | 0.4 | -3.84 | 0.56 | 0.52 | 1.34 | 4.1 | 0.004 | 0.90 | 0.0 | 0.05 | 15.16 | 0.01 | 2.196 | 21.81 | 1.39 | 12.3 | 87.4 | 0.2 | -2.19 | 3.65 | 0.65 | 0.71 | 1.77 | 3925 | 502 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5TC1 | 8397 | 2023-08-14 | 2016-09-13 | 3.6 | 3.60 | — | 3.6 | 0.006 | 0.87 | 0.0 | 0.08 | 18.34 | 0.01 | 1.126 | 33.79 | 0.27 | 3.3 | 96.7 | 0.0 | -3.80 | 0.19 | 0.77 | 4.30 | 3.6 | 0.004 | 0.61 | 0.0 | 0.04 | 16.96 | 0.00 | 2.198 | 7.68 | 0.62 | 4.5 | 95.5 | 0.0 | -0.49 | 0.70 | 0.21 | 0.84 | 2.89 | 15393 | 1352 | 10 | 242 | 0 | 0 | 0 | logfile |
✔ | 7NAP | 24277 | 2023-08-16 | 2021-06-22 | 3.2 | 3.90 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.05 | 13.06 | 0.01 | 2.090 | 2.71 | 0.00 | 1.2 | 98.7 | 0.1 | 1.23 | 0.86 | 0.84 | 2.15 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 15.72 | 0.00 | 2.042 | 12.52 | 0.35 | 2.7 | 97.3 | 0.0 | 1.53 | 0.79 | 0.86 | 0.86 | 1.85 | 69762 | 9240 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6T0R | 10357 | 2023-08-13 | 2019-10-03 | 2.82 | 2.90 | 2.91 | 2.9 | 0.005 | 0.66 | 0.0 | 0.05 | 13.99 | 0.01 | 2.279 | 4.08 | 4.99 | 3.5 | 96.5 | 0.0 | -2.98 | 0.69 | 0.85 | 3.55 | 2.9 | 0.003 | 0.52 | 0.0 | 0.04 | 16.53 | 0.00 | 2.056 | 7.55 | 2.66 | 2.9 | 97.1 | 0.0 | 0.68 | 1.03 | 0.69 | 0.86 | 2.96 | 14120 | 1690 | 7 | 20 | 0 | 31 | 0 | logfile |
✔ | 6RoW | 4975 | 2023-08-25 | 2019-05-13 | 4.5 | 4.52 | 4.16 | 4.2 | 0.016 | 1.50 | 0.0 | 0.07 | 14.46 | 0.01 | 1.848 | 49.61 | 0.00 | 30.3 | 68.7 | 1.0 | -6.95 | 0.81 | 0.74 | — | 4.2 | 0.005 | 0.73 | 0.0 | 0.04 | 13.68 | 0.01 | 1.902 | 16.83 | 0.00 | 16.7 | 83.1 | 0.2 | -3.08 | 1.48 | 0.82 | 0.74 | — | 43049 | 3129 | 7 | 0 | 0 | 0 | 20156 | logfile |
✔ | 6oGF | 20056 | 2023-08-31 | 2019-04-02 | 3.9 | 4.57 | — | 3.4 | 0.006 | 0.92 | 0.0 | 0.08 | 13.45 | 0.01 | 2.252 | 16.06 | 0.70 | 12.4 | 86.0 | 1.5 | -4.77 | 0.91 | 0.85 | 0.79 | 3.4 | 0.006 | 0.73 | 0.0 | 0.04 | 16.51 | 0.00 | 1.931 | 29.51 | 0.74 | 11.4 | 88.4 | 0.1 | -2.51 | 2.05 | 0.91 | 0.87 | 0.71 | 147733 | 6113 | 55 | 4655 | 0 | 0 | 0 | logfile |
✔ | 7DZY | 30921 | 2023-08-15 | 2021-01-26 | 3.6 | 3.83 | 3.38 | 3.1 | 0.020 | 2.12 | 0.0 | 0.00 | 4.32 | 0.01 | 1.980 | 3.14 | 0.00 | 3.7 | 95.4 | 0.9 | -0.42 | 0.43 | 0.27 | — | 3.3 | 0.003 | 0.83 | 0.0 | 0.00 | 5.21 | 0.00 | 2.105 | 3.02 | 0.00 | 10.5 | 89.3 | 0.2 | -2.46 | 2.13 | 0.71 | 0.70 | — | 18708 | 4677 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WU9 | 32824 | 2023-08-10 | 2022-02-07 | 3.375 | 3.51 | 3.21 | 3.4 | 0.002 | 0.42 | 0.0 | 0.04 | 13.28 | 0.00 | 2.137 | 6.33 | 0.00 | 3.0 | 97.0 | 0.0 | 1.21 | 0.71 | 0.82 | 3.04 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 15.22 | 0.00 | 2.261 | 8.40 | 0.43 | 3.0 | 97.0 | 0.0 | 1.17 | 0.82 | 0.68 | 0.83 | 2.14 | 7369 | 1030 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SN7 | 25213 | 2023-08-22 | 2021-10-27 | 4.2 | 4.22 | — | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 13.41 | 0.00 | 2.099 | 13.03 | 0.07 | 8.3 | 91.7 | 0.0 | 0.65 | 0.47 | 0.76 | — | 4.1 | 0.005 | 0.73 | 0.0 | 0.04 | 13.97 | 0.00 | 2.028 | 15.39 | 0.05 | 10.2 | 89.8 | 0.0 | 0.04 | 0.66 | 0.49 | 0.79 | — | 90482 | 12558 | 23 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DK1 | 27480 | 2023-08-15 | 2022-07-01 | 2.95 | 3.68 | 3.03 | 3.4 | 0.002 | 0.42 | 0.0 | 0.04 | 9.97 | 0.00 | 2.294 | 2.83 | 1.44 | 3.3 | 96.7 | 0.0 | 2.11 | 0.85 | 0.90 | 2.51 | 3.4 | 0.002 | 0.51 | 0.0 | 0.04 | 12.85 | 0.00 | 2.260 | 3.98 | 1.49 | 3.6 | 96.4 | 0.0 | 2.59 | 0.62 | 0.85 | 0.90 | 2.22 | 19500 | 2446 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oFX | 20048 | 2023-08-27 | 2019-04-01 | 3.3 | 4.60 | — | 2.8 | 0.008 | 1.07 | 0.0 | 0.09 | 14.39 | 0.01 | 2.098 | 16.59 | 0.43 | 9.3 | 90.1 | 0.6 | -4.73 | 0.91 | 0.82 | 1.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144986 | 5753 | 55 | 4659 | 0 | 0 | 0 | logfile |
✔ | 7S4V | 24835 | 2023-08-12 | 2021-09-09 | 3.28 | 3.87 | — | 3.7 | 0.003 | 0.54 | 0.0 | 0.04 | 17.44 | 0.00 | 2.202 | 4.81 | 0.00 | 5.0 | 95.0 | 0.0 | -1.46 | 0.80 | 0.80 | 2.24 | 3.7 | 0.004 | 0.57 | 0.0 | 0.04 | 18.53 | 0.00 | 2.217 | 5.54 | 0.00 | 5.0 | 95.0 | 0.0 | -0.71 | 0.56 | 0.85 | 0.87 | 2.01 | 12215 | 1122 | 4 | 145 | 0 | 0 | 0 | logfile |
✔ | 7ZQ6 | 14865 | 2023-08-22 | 2022-04-29 | 2.75 | 3.18 | 3.04 | 2.9 | 0.009 | 0.93 | 2.0 | 0.08 | 17.78 | 0.00 | 2.140 | 5.42 | 3.67 | 5.0 | 94.8 | 0.2 | -0.70 | 0.76 | 0.85 | 2.90 | 2.8 | 0.006 | 0.62 | 0.0 | 0.04 | 16.13 | 0.00 | 2.075 | 9.30 | 3.75 | 4.9 | 95.1 | 0.1 | 0.01 | 1.61 | 0.77 | 0.89 | 3.29 | 90507 | 3091 | 32 | 3095 | 0 | 0 | 0 | logfile |
✔ | 7TW1 | 26147 | 2023-08-17 | 2022-02-06 | 4.6 | 3.99 | — | 3.8 | 0.003 | 0.74 | 0.0 | 0.05 | 13.82 | 0.00 | 2.117 | 7.55 | 0.08 | 2.5 | 97.5 | 0.0 | -0.20 | 0.75 | 0.78 | — | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 13.96 | 0.00 | 2.179 | 12.52 | 0.04 | 4.1 | 95.9 | 0.0 | -0.25 | 1.17 | 0.75 | 0.79 | — | 23625 | 2993 | 4 | 0 | 0 | 0 | 0 | logfile |