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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6X1A | 21994 | 2023-08-12 | 2020-05-18 | 2.5 | 1.99 | 2.50 | 2.6 | 0.006 | 0.93 | 0.0 | 0.07 | 15.41 | 0.00 | 2.140 | 14.37 | 3.79 | 3.9 | 96.1 | 0.0 | -3.15 | 0.51 | 0.71 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1262 | 5 | 0 | 1 | 23 | 0 | logfile |
✘ | 7XLB | 33276 | 2023-08-15 | 2022-04-21 | 3.44 | 3.67 | 3.47 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 19.23 | 0.01 | 2.236 | 8.13 | 0.19 | 7.7 | 92.3 | 0.0 | -3.68 | 0.63 | 0.71 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19138 | 2352 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XiC | 33202 | 2023-08-20 | 2022-04-12 | 3.3 | 3.72 | 3.48 | 3.6 | 0.009 | 1.14 | 0.0 | 0.08 | 11.36 | 0.01 | 1.933 | 11.05 | 1.40 | 5.6 | 92.5 | 1.8 | -2.01 | 0.67 | 0.65 | 1.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29941 | 3706 | 31 | 0 | 71 | 0 | 0 | logfile |
✘ | 6ADQ | 9610 | 2023-08-27 | 2018-08-01 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48946 | 6026 | 44 | 0 | 74 | 0 | 0 | logfile |
✘ | 5W9J | 8785 | 2023-08-22 | 2017-06-23 | 4.8 | 4.91 | 5.09 | 4.7 | 0.013 | 1.57 | 0.0 | 0.07 | 11.98 | 0.02 | 1.881 | 5.79 | 0.90 | 4.0 | 94.8 | 1.2 | 0.53 | 0.78 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32958 | 4257 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6UZZ | 20965 | 2023-08-14 | 2019-11-16 | 3.1 | 3.48 | — | 3.4 | 0.009 | 0.92 | 0.0 | 0.06 | 10.61 | 0.01 | 2.325 | 2.53 | 0.24 | 1.8 | 98.0 | 0.2 | -4.22 | 0.60 | 0.81 | 3.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15832 | 1984 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 6SNH | 10257 | 2023-08-11 | 2019-08-24 | 3.9 | 4.16 | — | 3.9 | 0.008 | 1.24 | 1.0 | 0.06 | 14.34 | 0.00 | 2.181 | 19.70 | 1.49 | 11.0 | 88.9 | 0.1 | -4.30 | 0.65 | 0.71 | 2.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7315 | 918 | 4 | 0 | 1 | 1 | 0 | logfile |
✘ | 6VPV | 21320 | 2023-08-20 | 2020-02-04 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72192 | 6753 | 60 | 0 | 384 | 0 | 0 | logfile |
✘ | 6WEK | 21650 | 2023-08-15 | 2020-04-02 | 2.7 | 3.19 | — | 3.1 | 0.019 | 1.56 | 24.0 | 0.08 | 15.78 | 0.01 | 1.988 | 10.13 | 4.95 | 4.8 | 95.2 | 0.0 | -1.65 | 0.63 | 0.81 | 3.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17616 | 2048 | 8 | 0 | 32 | 0 | 0 | logfile |
✘ | 5XNM | 6742 | 2023-08-22 | 2017-05-23 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 92842 | 8712 | 90 | 0 | 486 | 0 | 0 | logfile |
✘ | 6VVY | 21407 | 2023-08-20 | 2020-02-18 | 3.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30033 | 3516 | 12 | 130 | 4 | 0 | 0 | logfile |
✘ | 6VVX | 21406 | 2023-08-20 | 2020-02-18 | 3.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29858 | 3508 | 12 | 128 | 4 | 0 | 0 | logfile |
✘ | 7D4P | 30575 | 2023-08-17 | 2020-09-24 | 2.7 | 3.03 | 2.86 | 3.0 | 0.007 | 0.80 | 0.0 | 0.04 | 13.57 | 0.00 | 2.269 | 4.62 | 0.67 | 1.2 | 98.8 | 0.0 | 2.42 | 0.58 | 0.76 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22472 | 2676 | 8 | 0 | 28 | 0 | 0 | logfile |
✘ | 7DXF | 30907 | 2023-08-17 | 2021-01-18 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22940 | 2740 | 8 | 0 | 40 | 0 | 0 | logfile |
✘ | 7DXC | 30904 | 2023-08-17 | 2021-01-18 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22896 | 2808 | 8 | 0 | 20 | 0 | 0 | logfile |
✘ | 6CFW | 7468 | 2023-08-15 | 2018-02-17 | 3.7 | 3.82 | — | 3.8 | 0.010 | 1.27 | 1.0 | 0.07 | 12.05 | 0.01 | 1.968 | 4.52 | 1.60 | 10.7 | 89.0 | 0.4 | -4.93 | 0.70 | 0.86 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19589 | 2530 | 17 | 0 | 4 | 0 | 0 | logfile |
✘ | 7DXG | 30908 | 2023-08-17 | 2021-01-18 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23432 | 2792 | 8 | 0 | 40 | 0 | 0 | logfile |
✘ | 7CZS | 30515 | 2023-08-22 | 2020-09-09 | 3.6 | 3.71 | — | 3.6 | 0.013 | 1.30 | 8.0 | 0.09 | 17.82 | 0.01 | 1.914 | 35.67 | 12.67 | 11.5 | 84.4 | 4.1 | -4.03 | 0.57 | 0.66 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34321 | 4310 | 32 | 0 | 71 | 0 | 0 | logfile |
✘ | 6KAF | 9957 | 2023-08-26 | 2019-06-22 | 3.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 104363 | 9607 | 104 | 0 | 552 | 0 | 0 | logfile |
✘ | 6FYY | 4328 | 2023-08-26 | 2018-03-12 | 3.02 | 3.15 | 3.09 | 3.1 | 0.008 | 1.36 | 57.0 | 0.10 | 20.78 | 0.02 | 0.817 | 7.39 | 10.74 | 8.2 | 89.1 | 2.7 | -1.95 | 0.63 | 0.83 | 1.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 104316 | 8066 | 54 | 1886 | 200 | 0 | 0 | logfile |