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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8CVX | 27020 | 2022-12-18 | 2022-05-18 | 3.39 | 3.62 | 3.40 | 3.6 | 0.009 | 1.58 | 16.0 | 0.11 | 16.44 | 0.01 | 2.272 | 8.22 | 5.13 | 4.5 | 95.3 | 0.2 | -3.03 | 0.64 | 0.74 | 1.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20448 | 2541 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 7SYG | 25527 | 2022-12-15 | 2021-11-25 | 4.3 | 3.38 | 4.15 | 3.2 | 0.003 | 0.74 | 0.0 | 0.04 | 15.60 | 0.01 | 2.257 | 4.92 | 0.00 | 5.1 | 94.8 | 0.0 | -2.54 | 0.65 | 0.65 | — | 3.2 | 0.006 | 0.82 | 0.0 | 0.04 | 16.68 | 0.01 | 1.985 | 18.87 | 0.07 | 9.1 | 90.9 | 0.0 | -1.86 | 1.11 | 0.66 | 0.68 | — | 78773 | 4891 | 38 | 1859 | 2 | 0 | 0 | logfile |
✘ | 7UY8 | 26867 | 2022-12-18 | 2022-05-06 | 4.5 | 8.56 | 4.38 | 4.2 | 0.003 | 0.63 | 1.0 | 0.05 | 14.55 | 0.00 | 2.207 | 8.85 | 0.00 | 6.1 | 93.9 | 0.0 | -0.66 | 0.79 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9552 | 1161 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7SYM | 25533 | 2022-12-15 | 2021-11-25 | 4.8 | 3.64 | 4.44 | 3.5 | 0.003 | 0.83 | 1.0 | 0.04 | 15.76 | 0.01 | 2.245 | 5.33 | 0.00 | 5.3 | 94.7 | 0.0 | -2.78 | 0.63 | 0.68 | — | 3.5 | 0.005 | 0.76 | 0.0 | 0.04 | 16.47 | 0.01 | 2.002 | 17.27 | 0.00 | 8.9 | 91.1 | 0.0 | -1.69 | 0.54 | 0.64 | 0.70 | — | 78761 | 4891 | 38 | 1859 | 2 | 0 | 0 | logfile |
✘ | 7VY1 | 32191 | 2022-12-20 | 2021-11-13 | 3.3 | 3.60 | — | 3.6 | 0.007 | 0.82 | 0.0 | 0.04 | 17.76 | 0.00 | 2.061 | 9.23 | 0.20 | 4.4 | 95.6 | 0.0 | 1.76 | 0.77 | 0.89 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38899 | 4652 | 44 | 0 | 24 | 0 | 0 | logfile |
✔ | 7SYi | 25529 | 2022-12-15 | 2021-11-25 | 4.5 | 3.59 | 4.35 | 3.4 | 0.004 | 0.87 | 0.0 | 0.04 | 15.56 | 0.01 | 2.213 | 5.75 | 0.00 | 6.6 | 93.3 | 0.0 | -2.89 | 0.67 | 0.65 | — | 3.4 | 0.004 | 0.69 | 0.0 | 0.04 | 16.18 | 0.01 | 2.037 | 17.90 | 0.02 | 8.4 | 91.6 | 0.0 | -1.77 | 1.42 | 0.68 | 0.67 | — | 78761 | 4891 | 38 | 1859 | 2 | 0 | 0 | logfile |
✔ | 7B1B | 11982 | 2022-12-13 | 2020-11-24 | 4.23 | 6.70 | 4.32 | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 14.15 | 0.01 | 2.087 | 33.11 | 0.54 | 13.6 | 86.4 | 0.0 | -2.84 | 0.88 | 0.83 | — | 4.2 | 0.003 | 0.65 | 0.0 | 0.04 | 12.13 | 0.00 | 2.080 | 23.35 | 0.00 | 12.1 | 87.9 | 0.0 | -2.71 | 0.39 | 0.88 | 0.82 | — | 12870 | 1697 | 12 | 0 | 22 | 0 | 0 | logfile |
✔ | 7UY7 | 26866 | 2022-12-13 | 2022-05-06 | 4.2 | 4.18 | 4.04 | 3.2 | 0.002 | 0.56 | 1.0 | 0.04 | 15.12 | 0.00 | 2.203 | 13.99 | 0.18 | 3.8 | 96.2 | 0.0 | -0.53 | 0.73 | 0.74 | — | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 15.63 | 0.00 | 2.180 | 14.39 | 0.12 | 4.2 | 95.8 | 0.0 | -0.62 | 1.23 | 0.73 | 0.76 | — | 15161 | 1808 | 7 | 10 | 1 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2022-12-18 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✔ | 7SYK | 25531 | 2022-12-15 | 2021-11-25 | 4.2 | 3.51 | 4.09 | 3.3 | 0.003 | 0.83 | 0.0 | 0.04 | 15.81 | 0.01 | 2.255 | 5.30 | 0.02 | 5.9 | 94.0 | 0.0 | -2.72 | 0.67 | 0.67 | — | 3.3 | 0.004 | 0.67 | 0.0 | 0.04 | 16.36 | 0.00 | 2.071 | 15.74 | 0.02 | 9.1 | 90.9 | 0.0 | -1.53 | 1.44 | 0.68 | 0.69 | — | 78761 | 4891 | 38 | 1859 | 2 | 0 | 0 | logfile |
✔ | 7SYU | 25541 | 2022-12-15 | 2021-11-25 | 4.6 | 3.18 | 4.06 | 3.1 | 0.003 | 0.80 | 2.0 | 0.04 | 15.15 | 0.01 | 2.251 | 4.42 | 0.07 | 4.9 | 95.1 | 0.0 | -2.66 | 0.63 | 0.67 | — | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 15.71 | 0.00 | 2.106 | 12.48 | 0.07 | 5.7 | 94.3 | 0.0 | -1.17 | 0.46 | 0.63 | 0.69 | — | 80962 | 4896 | 38 | 1960 | 1 | 0 | 0 | logfile |
✔ | 7SYT | 25540 | 2022-12-15 | 2021-11-25 | 4.4 | 3.44 | 4.34 | 3.4 | 0.004 | 0.85 | 0.0 | 0.04 | 15.40 | 0.01 | 2.271 | 4.93 | 0.07 | 5.0 | 95.0 | 0.0 | -2.59 | 0.59 | 0.63 | — | 3.4 | 0.005 | 0.79 | 0.0 | 0.04 | 16.34 | 0.01 | 1.979 | 18.27 | 0.02 | 8.3 | 91.7 | 0.0 | -1.71 | 1.15 | 0.60 | 0.66 | — | 80962 | 4896 | 38 | 1960 | 1 | 0 | 0 | logfile |
✔ | 7Z0L | 14427 | 2022-12-13 | 2022-02-23 | 4.0 | 4.43 | 4.11 | 4.3 | 0.005 | 0.93 | 0.0 | 0.06 | 14.10 | 0.01 | 2.223 | 7.63 | 0.65 | 5.5 | 94.5 | 0.0 | -0.67 | 0.58 | 0.49 | — | 4.4 | 0.003 | 0.65 | 0.0 | 0.04 | 15.57 | 0.00 | 2.120 | 14.32 | 0.52 | 4.3 | 95.7 | 0.0 | 0.50 | 0.96 | 0.59 | 0.52 | — | 13752 | 856 | 9 | 0 | 12 | 0 | 6713 | logfile |
✔ | 7SYJ | 25530 | 2022-12-15 | 2021-11-25 | 4.8 | 3.85 | 4.49 | 3.7 | 0.003 | 0.79 | 0.0 | 0.04 | 15.07 | 0.01 | 2.240 | 5.42 | 0.02 | 6.1 | 93.9 | 0.0 | -2.97 | 0.71 | 0.63 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.04 | 16.15 | 0.01 | 1.946 | 20.80 | 0.02 | 9.4 | 90.6 | 0.0 | -1.72 | 1.32 | 0.74 | 0.69 | — | 78761 | 4891 | 38 | 1859 | 2 | 0 | 0 | logfile |
✘ | 7VDD | 31914 | 2022-12-18 | 2021-09-06 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11940 | 1044 | 10 | 0 | 0 | 0 | 3736 | logfile |
✘ | 8H0Y | 34418 | 2022-12-18 | 2022-09-30 | 2.85 | 3.06 | 2.88 | 3.0 | 0.008 | 0.82 | 0.0 | 0.06 | 13.16 | 0.01 | 2.274 | 2.64 | 0.00 | 3.2 | 96.8 | 0.0 | -1.19 | 0.81 | 0.86 | 3.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24999 | 3094 | 6 | 0 | 52 | 0 | 0 | logfile |
✔ | 8A8M | 15233 | 2022-12-11 | 2022-06-23 | 4.0 | 5.84 | 4.31 | 4.3 | 0.004 | 0.89 | 0.0 | 0.05 | 17.75 | 0.00 | 2.218 | 29.38 | 1.56 | 8.5 | 91.4 | 0.2 | -2.63 | 0.78 | 0.54 | — | 4.4 | 0.005 | 0.95 | 0.0 | 0.05 | 17.97 | 0.01 | 1.851 | 45.08 | 0.87 | 10.6 | 89.2 | 0.2 | -2.64 | 0.75 | 0.83 | 0.74 | — | 5244 | 647 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 7Z5J | 14522 | 2022-12-22 | 2022-03-09 | 2.58 | 3.23 | 2.56 | 3.1 | 0.022 | 1.37 | 14.0 | 0.08 | 12.35 | 0.01 | 1.486 | 7.21 | 1.03 | 4.3 | 95.4 | 0.2 | -3.15 | 0.81 | 0.80 | 5.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25576 | 3234 | 24 | 0 | 54 | 0 | 0 | logfile |
✘ | 7URC | 26708 | 2022-12-18 | 2022-04-21 | 3.14 | 3.74 | 3.25 | 3.6 | 0.017 | 0.98 | 0.0 | 0.88 | 13.59 | 0.00 | 1.182 | 10.27 | 0.00 | 3.5 | 96.5 | 0.0 | -3.02 | 0.58 | 0.86 | 3.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5561 | 658 | 4 | 0 | 12 | 0 | 0 | logfile |
✔ | 7PSD | 13612 | 2022-12-18 | 2021-09-22 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9032 | 1160 | 2 | 0 | 0 | 0 | 0 | logfile |