Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8CVX	27020	2022-12-18	2022-05-18	3.39	3.62	3.40	3.6	0.009	1.58	16.0	0.11	16.44	0.01	2.272	8.22	5.13	4.5	95.3	0.2	-3.03	0.64	0.74	1.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20448	2541	12	0	4	0	0	logfile
✔	7SYG	25527	2022-12-15	2021-11-25	4.3	3.38	4.15	3.2	0.003	0.74	0.0	0.04	15.60	0.01	2.257	4.92	0.00	5.1	94.8	0.0	-2.54	0.65	0.65	—	3.2	0.006	0.82	0.0	0.04	16.68	0.01	1.985	18.87	0.07	9.1	90.9	0.0	-1.86	1.11	0.66	0.68	—	78773	4891	38	1859	2	0	0	logfile
✘	7UY8	26867	2022-12-18	2022-05-06	4.5	8.56	4.38	4.2	0.003	0.63	1.0	0.05	14.55	0.00	2.207	8.85	0.00	6.1	93.9	0.0	-0.66	0.79	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9552	1161	5	0	1	0	0	logfile
✔	7SYM	25533	2022-12-15	2021-11-25	4.8	3.64	4.44	3.5	0.003	0.83	1.0	0.04	15.76	0.01	2.245	5.33	0.00	5.3	94.7	0.0	-2.78	0.63	0.68	—	3.5	0.005	0.76	0.0	0.04	16.47	0.01	2.002	17.27	0.00	8.9	91.1	0.0	-1.69	0.54	0.64	0.70	—	78761	4891	38	1859	2	0	0	logfile
✘	7VY1	32191	2022-12-20	2021-11-13	3.3	3.60	—	3.6	0.007	0.82	0.0	0.04	17.76	0.00	2.061	9.23	0.20	4.4	95.6	0.0	1.76	0.77	0.89	2.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38899	4652	44	0	24	0	0	logfile
✔	7SYi	25529	2022-12-15	2021-11-25	4.5	3.59	4.35	3.4	0.004	0.87	0.0	0.04	15.56	0.01	2.213	5.75	0.00	6.6	93.3	0.0	-2.89	0.67	0.65	—	3.4	0.004	0.69	0.0	0.04	16.18	0.01	2.037	17.90	0.02	8.4	91.6	0.0	-1.77	1.42	0.68	0.67	—	78761	4891	38	1859	2	0	0	logfile
✔	7B1B	11982	2022-12-13	2020-11-24	4.23	6.70	4.32	4.1	0.004	0.70	0.0	0.04	14.15	0.01	2.087	33.11	0.54	13.6	86.4	0.0	-2.84	0.88	0.83	—	4.2	0.003	0.65	0.0	0.04	12.13	0.00	2.080	23.35	0.00	12.1	87.9	0.0	-2.71	0.39	0.88	0.82	—	12870	1697	12	0	22	0	0	logfile
✔	7UY7	26866	2022-12-13	2022-05-06	4.2	4.18	4.04	3.2	0.002	0.56	1.0	0.04	15.12	0.00	2.203	13.99	0.18	3.8	96.2	0.0	-0.53	0.73	0.74	—	3.2	0.003	0.61	0.0	0.04	15.63	0.00	2.180	14.39	0.12	4.2	95.8	0.0	-0.62	1.23	0.73	0.76	—	15161	1808	7	10	1	0	0	logfile
✘	7XL4	33272	2022-12-18	2022-04-21	3.86	3.92	—	3.8	0.001	0.36	0.0	0.04	9.42	0.00	2.274	4.13	0.00	1.4	98.6	0.0	-4.82	0.78	0.75	1.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24560	3479	8	0	3	0	0	logfile
✔	7SYK	25531	2022-12-15	2021-11-25	4.2	3.51	4.09	3.3	0.003	0.83	0.0	0.04	15.81	0.01	2.255	5.30	0.02	5.9	94.0	0.0	-2.72	0.67	0.67	—	3.3	0.004	0.67	0.0	0.04	16.36	0.00	2.071	15.74	0.02	9.1	90.9	0.0	-1.53	1.44	0.68	0.69	—	78761	4891	38	1859	2	0	0	logfile
✔	7SYU	25541	2022-12-15	2021-11-25	4.6	3.18	4.06	3.1	0.003	0.80	2.0	0.04	15.15	0.01	2.251	4.42	0.07	4.9	95.1	0.0	-2.66	0.63	0.67	—	3.1	0.003	0.59	0.0	0.04	15.71	0.00	2.106	12.48	0.07	5.7	94.3	0.0	-1.17	0.46	0.63	0.69	—	80962	4896	38	1960	1	0	0	logfile
✔	7SYT	25540	2022-12-15	2021-11-25	4.4	3.44	4.34	3.4	0.004	0.85	0.0	0.04	15.40	0.01	2.271	4.93	0.07	5.0	95.0	0.0	-2.59	0.59	0.63	—	3.4	0.005	0.79	0.0	0.04	16.34	0.01	1.979	18.27	0.02	8.3	91.7	0.0	-1.71	1.15	0.60	0.66	—	80962	4896	38	1960	1	0	0	logfile
✔	7Z0L	14427	2022-12-13	2022-02-23	4.0	4.43	4.11	4.3	0.005	0.93	0.0	0.06	14.10	0.01	2.223	7.63	0.65	5.5	94.5	0.0	-0.67	0.58	0.49	—	4.4	0.003	0.65	0.0	0.04	15.57	0.00	2.120	14.32	0.52	4.3	95.7	0.0	0.50	0.96	0.59	0.52	—	13752	856	9	0	12	0	6713	logfile
✔	7SYJ	25530	2022-12-15	2021-11-25	4.8	3.85	4.49	3.7	0.003	0.79	0.0	0.04	15.07	0.01	2.240	5.42	0.02	6.1	93.9	0.0	-2.97	0.71	0.63	—	3.6	0.005	0.74	0.0	0.04	16.15	0.01	1.946	20.80	0.02	9.4	90.6	0.0	-1.72	1.32	0.74	0.69	—	78761	4891	38	1859	2	0	0	logfile
✘	7VDD	31914	2022-12-18	2021-09-06	3.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11940	1044	10	0	0	0	3736	logfile
✘	8H0Y	34418	2022-12-18	2022-09-30	2.85	3.06	2.88	3.0	0.008	0.82	0.0	0.06	13.16	0.01	2.274	2.64	0.00	3.2	96.8	0.0	-1.19	0.81	0.86	3.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24999	3094	6	0	52	0	0	logfile
✔	8A8M	15233	2022-12-11	2022-06-23	4.0	5.84	4.31	4.3	0.004	0.89	0.0	0.05	17.75	0.00	2.218	29.38	1.56	8.5	91.4	0.2	-2.63	0.78	0.54	—	4.4	0.005	0.95	0.0	0.05	17.97	0.01	1.851	45.08	0.87	10.6	89.2	0.2	-2.64	0.75	0.83	0.74	—	5244	647	4	0	6	0	0	logfile
✘	7Z5J	14522	2022-12-22	2022-03-09	2.58	3.23	2.56	3.1	0.022	1.37	14.0	0.08	12.35	0.01	1.486	7.21	1.03	4.3	95.4	0.2	-3.15	0.81	0.80	5.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25576	3234	24	0	54	0	0	logfile
✘	7URC	26708	2022-12-18	2022-04-21	3.14	3.74	3.25	3.6	0.017	0.98	0.0	0.88	13.59	0.00	1.182	10.27	0.00	3.5	96.5	0.0	-3.02	0.58	0.86	3.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5561	658	4	0	12	0	0	logfile
✔	7PSD	13612	2022-12-18	2021-09-22	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9032	1160	2	0	0	0	0	logfile

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