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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7RFP | 24444 | 2024-03-10 | 2021-07-14 | 4.4 | 4.57 | — | 4.3 | 0.014 | 2.06 | 8.0 | 0.12 | 7.12 | 0.01 | 1.581 | 3.60 | 8.00 | 9.5 | 87.5 | 3.0 | -1.46 | 0.68 | 0.61 | — | 4.3 | 0.005 | 0.99 | 0.0 | 0.05 | 7.64 | 0.00 | 2.109 | 12.42 | 0.00 | 21.8 | 77.6 | 0.6 | -4.29 | 1.50 | 0.81 | 0.76 | — | 5532 | 1114 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WFD | 32462 | 2024-03-23 | 2021-12-26 | 3.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35603 | 3231 | 30 | 0 | 211 | 0 | 0 | logfile |
✘ | 6KAD | 9956 | 2024-03-21 | 2019-06-21 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105342 | 9734 | 94 | 0 | 560 | 0 | 0 | logfile |
✔ | 7KS9 | 23016 | 2024-03-19 | 2020-11-21 | 4.75 | 5.64 | 4.96 | 4.9 | 0.005 | 0.80 | 0.0 | 0.05 | 11.62 | 0.01 | 2.222 | 3.57 | 0.07 | 1.9 | 98.1 | 0.0 | -0.64 | 0.82 | 0.74 | — | 4.8 | 0.003 | 0.62 | 0.0 | 0.04 | 11.64 | 0.00 | 2.098 | 14.10 | 0.00 | 3.7 | 96.3 | 0.0 | 0.05 | 0.73 | 0.84 | 0.80 | — | 25380 | 3189 | 20 | 0 | 59 | 0 | 0 | logfile |
✔ | 7S6L | 24879 | 2024-03-19 | 2021-09-14 | 4.0 | 4.77 | 4.03 | 4.2 | 0.020 | 1.74 | 0.0 | 0.11 | 9.97 | 0.01 | 2.336 | 0.63 | 0.04 | 2.2 | 97.8 | 0.0 | 0.74 | 0.84 | 0.73 | — | 4.2 | 0.004 | 0.63 | 0.0 | 0.04 | 12.15 | 0.00 | 2.130 | 10.39 | 0.44 | 3.9 | 96.1 | 0.0 | 0.71 | 0.68 | 0.85 | 0.83 | — | 24755 | 3117 | 15 | 0 | 30 | 0 | 0 | logfile |
✘ | 6J6H | 0687 | 2024-03-17 | 2019-01-15 | 3.6 | 3.74 | — | 3.6 | 0.008 | 0.97 | 2.0 | 0.09 | 17.34 | 0.01 | 1.805 | 16.37 | 2.68 | 4.4 | 95.1 | 0.5 | -3.20 | 0.62 | 0.67 | 1.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76847 | 8644 | 47 | 551 | 14 | 0 | 0 | logfile |
✔ | 7U5S | 26357 | 2024-03-25 | 2022-03-02 | 4.16 | 3.37 | 4.30 | 4.2 | 0.008 | 1.02 | 0.0 | 0.06 | 14.83 | 0.01 | 2.265 | 9.16 | 0.00 | 6.0 | 94.0 | 0.0 | -4.93 | 0.57 | 0.42 | — | 4.2 | 0.003 | 0.75 | 0.0 | 0.04 | 13.47 | 0.00 | 2.082 | 16.77 | 0.00 | 5.7 | 94.3 | 0.0 | -1.27 | 1.57 | 0.65 | 0.62 | — | 23086 | 3006 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Z15 | 14441 | 2024-03-25 | 2022-02-24 | 1.93 | 2.40 | 1.98 | 2.3 | 0.012 | 1.01 | 9.0 | 0.06 | 15.88 | 0.01 | 1.723 | 3.87 | 0.83 | 1.6 | 98.4 | 0.0 | 1.32 | 0.83 | 0.86 | 6.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46112 | 2888 | 32 | 0 | 16 | 1171 | 22357 | logfile |
✘ | 6JiY | 9837 | 2024-03-12 | 2019-02-24 | 3.9 | 4.05 | — | 3.9 | 0.008 | 1.06 | 1.0 | 0.05 | 15.54 | 0.01 | 2.203 | 7.76 | 0.47 | 12.2 | 87.5 | 0.2 | -5.76 | 0.73 | 0.78 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115288 | 15056 | 20 | 0 | 32 | 0 | 0 | logfile |
✘ | 5GM6 | 9524 | 2024-03-11 | 2016-07-12 | 3.5 | 3.61 | — | 3.6 | 0.012 | 1.33 | 11.0 | 0.08 | 15.15 | 0.01 | 1.303 | 18.95 | 3.36 | 6.6 | 92.1 | 1.2 | -3.54 | 0.58 | 0.83 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112064 | 12796 | 55 | 361 | 881 | 0 | 0 | logfile |
✘ | 6L35 | 0821 | 2024-03-22 | 2019-10-09 | 3.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34822 | 3260 | 30 | 0 | 205 | 0 | 0 | logfile |
✘ | 7o1C | 12695 | 2024-03-24 | 2021-03-29 | 2.6 | 3.02 | 2.70 | 2.4 | 0.018 | 1.90 | 0.0 | 0.06 | 22.52 | 0.02 | 0.055 | 6.76 | 0.04 | 5.1 | 94.8 | 0.1 | -1.96 | 0.80 | 0.83 | 3.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148175 | 6042 | 76 | 4638 | 489 | 800 | 0 | logfile |
✘ | 5TAV | 8386 | 2024-03-14 | 2016-09-10 | 4.8 | 4.96 | 5.58 | 4.7 | 0.004 | 0.89 | 4.0 | 0.05 | 9.84 | 0.01 | 1.373 | 4.75 | 0.39 | 9.7 | 90.1 | 0.2 | -4.80 | 0.77 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121452 | 13500 | 12 | 0 | 3716 | 0 | 0 | logfile |
✔ | 5TA3 | 8377 | 2024-03-14 | 2016-09-09 | 4.4 | 4.71 | 4.62 | 4.5 | 0.004 | 0.90 | 0.0 | 0.05 | 10.08 | 0.01 | 1.374 | 5.28 | 0.54 | 10.8 | 89.1 | 0.1 | -4.86 | 0.81 | 0.78 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 11.99 | 0.00 | 2.108 | 14.68 | 0.00 | 10.7 | 89.2 | 0.1 | -1.24 | 1.50 | 0.81 | 0.79 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✘ | 7JN3 | 22400 | 2024-03-16 | 2020-08-03 | 3.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15666 | 1807 | 14 | 68 | 8 | 0 | 0 | logfile |
✘ | 8DDU | 27342 | 2024-03-22 | 2022-06-19 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |
✘ | 7S6J | 24877 | 2024-03-21 | 2021-09-14 | 3.4 | 3.70 | 3.47 | 3.6 | 0.020 | 1.80 | 0.0 | 0.11 | 9.98 | 0.01 | 2.401 | 0.72 | 0.18 | 4.0 | 96.0 | 0.0 | 0.16 | 0.80 | 0.82 | 2.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30795 | 3894 | 21 | 0 | 33 | 0 | 0 | logfile |
✘ | 6J6Q | 0692 | 2024-03-17 | 2019-01-15 | 3.7 | 3.85 | — | 3.7 | 0.008 | 0.99 | 0.0 | 0.09 | 17.42 | 0.01 | 1.463 | 18.21 | 2.93 | 4.9 | 94.2 | 0.9 | -3.65 | 0.62 | 0.66 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 80535 | 9167 | 50 | 549 | 15 | 0 | 0 | logfile |
✔ | 7Q9K | 13872 | 2024-03-20 | 2021-11-12 | 4.5 | 7.17 | — | 4.5 | 0.005 | 0.88 | 1.0 | 0.05 | 11.19 | 0.01 | 1.447 | 5.50 | 0.44 | 3.7 | 95.9 | 0.4 | 0.13 | 0.82 | 0.65 | — | 4.5 | 0.004 | 0.73 | 0.0 | 0.05 | 11.75 | 0.00 | 2.055 | 24.81 | 0.00 | 6.1 | 93.9 | 0.0 | -0.72 | 1.60 | 0.85 | 0.74 | — | 27225 | 3388 | 25 | 0 | 60 | 0 | 0 | logfile |
✔ | 7WFG | 32465 | 2024-03-14 | 2021-12-26 | 4.33 | 4.89 | — | 4.3 | 0.006 | 1.01 | 1.0 | 0.06 | 11.46 | 0.01 | 2.204 | 8.95 | 1.08 | 12.3 | 87.5 | 0.2 | -5.06 | 0.68 | 0.68 | — | 4.3 | 0.003 | 0.78 | 0.0 | 0.05 | 12.56 | 0.01 | 2.095 | 21.21 | 0.36 | 11.0 | 89.0 | 0.1 | -2.60 | 1.58 | 0.71 | 0.75 | — | 9836 | 1246 | 11 | 0 | 125 | 0 | 0 | logfile |