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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8APG | 15570 | 2023-07-11 | 2022-08-09 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 61 | 0 | 36 | 0 | 62387 | logfile |
✘ | 8APF | 15568 | 2023-07-11 | 2022-08-09 | 4.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 60 | 0 | 36 | 0 | 62387 | logfile |
✘ | 8APJ | 15572 | 2023-07-11 | 2022-08-09 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 60 | 0 | 36 | 0 | 62387 | logfile |
✘ | 7UND | 26621 | 2023-07-11 | 2022-04-10 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 129454 | 8269 | 40 | 269 | 10 | 0 | 61541 | logfile |
✔ | 7YFZ | 33802 | 2023-07-10 | 2022-07-09 | 3.19 | 2.87 | 2.92 | 2.9 | 0.006 | 0.86 | 3.0 | 0.05 | 12.31 | 0.01 | 1.749 | 18.46 | 0.20 | 6.2 | 93.6 | 0.2 | -0.92 | 0.62 | 0.79 | 3.45 | 2.9 | 0.003 | 0.61 | 0.0 | 0.04 | 14.55 | 0.00 | 1.817 | 13.49 | 0.38 | 5.3 | 94.6 | 0.1 | 0.30 | 2.24 | 0.61 | 0.82 | 3.13 | 128850 | 8814 | 42 | 0 | 0 | 0 | 61470 | logfile |
✔ | 7U06 | 26255 | 2023-07-10 | 2022-02-17 | 4.2 | 3.74 | — | 3.7 | 0.005 | 0.86 | 0.0 | 0.05 | 14.08 | 0.01 | 1.997 | 5.33 | 0.01 | 11.1 | 88.8 | 0.1 | -2.22 | 0.50 | 0.68 | — | 3.7 | 0.004 | 0.62 | 0.0 | 0.04 | 14.18 | 0.00 | 1.865 | 12.37 | 0.01 | 11.2 | 88.6 | 0.2 | -1.99 | 0.53 | 0.52 | 0.70 | — | 124310 | 7391 | 31 | 0 | 764 | 0 | 60450 | logfile |
✔ | 7oHT | 12908 | 2023-07-12 | 2021-05-11 | 4.7 | 6.83 | 4.99 | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 17.51 | 0.00 | 1.855 | 6.77 | 1.28 | 5.3 | 94.6 | 0.1 | 0.83 | 0.81 | 0.61 | — | 3.4 | 0.006 | 0.65 | 0.0 | 0.04 | 18.10 | 0.00 | 1.799 | 24.06 | 0.02 | 9.9 | 89.9 | 0.2 | -1.17 | 1.76 | 0.86 | 0.78 | — | 135365 | 5154 | 30 | 1618 | 3 | 0 | 59714 | logfile |
✔ | 6RW4 | 10021 | 2023-07-10 | 2019-06-03 | 2.97 | 2.14 | 2.98 | 2.8 | 0.008 | 0.67 | 0.0 | 0.08 | 13.18 | 0.01 | 1.650 | 2.42 | 0.06 | 3.0 | 97.0 | 0.1 | -2.57 | 0.85 | 0.84 | 4.78 | 2.8 | 0.004 | 0.65 | 0.0 | 0.04 | 14.61 | 0.01 | 1.675 | 3.45 | 0.88 | 1.9 | 98.0 | 0.0 | 1.04 | 1.98 | 0.88 | 0.88 | 4.29 | 128080 | 5920 | 47 | 955 | 85 | 59 | 59211 | logfile |
✔ | 6SKL | 10227 | 2023-07-07 | 2019-08-16 | 3.7 | 3.87 | — | 3.7 | 0.013 | 1.93 | 50.0 | 0.11 | 15.18 | 0.02 | 1.901 | 0.27 | 0.09 | 3.3 | 96.7 | 0.0 | -1.69 | 0.71 | 0.72 | 1.97 | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 16.54 | 0.00 | 1.787 | 8.63 | 0.19 | 4.0 | 96.0 | 0.0 | 0.38 | 3.48 | 0.74 | 0.78 | 1.67 | 118181 | 7251 | 24 | 59 | 11 | 0 | 58997 | logfile |
✘ | 7oWG | 13097 | 2023-07-06 | 2021-06-18 | 4.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 114114 | 7078 | 8 | 0 | 110 | 0 | 57040 | logfile |
✘ | 8AUV | 15674 | 2023-07-12 | 2022-08-25 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 131912 | 4773 | 72 | 1638 | 130 | 2372 | 56307 | logfile |
✔ | 6TMG | 10520 | 2023-07-07 | 2019-12-04 | 2.8 | 2.79 | 2.73 | 2.8 | 0.008 | 0.94 | 0.0 | 0.04 | 15.61 | 0.00 | 1.898 | 3.39 | 0.69 | 2.9 | 97.1 | 0.0 | -0.62 | 0.73 | 0.86 | 4.49 | 2.7 | 0.004 | 0.56 | 0.0 | 0.04 | 16.99 | 0.00 | 1.937 | 7.90 | 1.28 | 2.9 | 97.1 | 0.0 | 1.95 | 0.70 | 0.75 | 0.90 | 3.85 | 116594 | 7122 | 68 | 0 | 44 | 0 | 56046 | logfile |
✔ | 7oHU | 12909 | 2023-07-10 | 2021-05-11 | 3.7 | 4.68 | 3.77 | 3.4 | 0.008 | 0.53 | 1.0 | 0.03 | 16.12 | 0.00 | 1.811 | 5.44 | 0.45 | 3.5 | 96.5 | 0.0 | 1.01 | 0.83 | 0.76 | 1.33 | 3.4 | 0.007 | 0.58 | 1.0 | 0.03 | 17.35 | 0.00 | 1.751 | 15.03 | 0.22 | 7.3 | 92.6 | 0.0 | -0.57 | 1.32 | 0.85 | 0.81 | 1.56 | 127652 | 4202 | 29 | 1840 | 2 | 0 | 54773 | logfile |
✘ | 7RL5 | 24516 | 2023-07-11 | 2021-07-23 | 3.8 | 3.61 | — | 3.8 | 0.013 | 2.04 | 24.0 | 0.11 | 16.71 | 0.02 | 0.524 | 3.05 | 2.05 | 3.3 | 96.3 | 0.4 | -1.86 | 0.40 | 0.52 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106032 | 6708 | 24 | 0 | 24 | 0 | 52716 | logfile |
✔ | 7RL0 | 24512 | 2023-07-11 | 2021-07-22 | 2.8 | 2.88 | — | 2.9 | 0.014 | 2.04 | 48.0 | 0.11 | 14.56 | 0.02 | 1.912 | 0.47 | 1.08 | 2.5 | 97.3 | 0.2 | -1.35 | 0.40 | 0.48 | 2.19 | 2.9 | 0.009 | 0.80 | 0.0 | 0.05 | 17.05 | 0.01 | 1.762 | 12.73 | 2.68 | 3.8 | 96.0 | 0.2 | 0.07 | 1.16 | 0.52 | 0.69 | 2.15 | 106080 | 6708 | 24 | 0 | 48 | 0 | 52716 | logfile |
✔ | 6RQC | 4980 | 2023-07-19 | 2019-05-15 | 4.4 | 4.57 | 4.38 | 4.4 | 0.012 | 1.28 | 1.0 | 0.07 | 18.21 | 0.01 | 1.965 | 9.13 | 0.54 | 10.4 | 89.5 | 0.1 | -5.03 | 0.79 | 0.67 | — | 4.4 | 0.005 | 0.75 | 0.0 | 0.04 | 17.12 | 0.01 | 1.824 | 19.87 | 0.00 | 12.6 | 87.4 | 0.0 | -2.74 | 3.23 | 0.80 | 0.70 | — | 105223 | 6174 | 23 | 176 | 15 | 0 | 51978 | logfile |
✘ | 6G2H | 4343 | 2023-07-18 | 2018-03-23 | 4.6 | 4.69 | — | 4.5 | 0.013 | 1.94 | 46.0 | 0.11 | 13.54 | 0.01 | 1.921 | 14.05 | 2.29 | 8.3 | 91.0 | 0.7 | -3.04 | 0.79 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103896 | 6454 | 6 | 0 | 0 | 0 | 51852 | logfile |
✔ | 8BZ1 | 16335 | 2023-07-19 | 2022-12-14 | 3.8 | 4.17 | 3.77 | 3.3 | 0.004 | 0.74 | 1.0 | 0.05 | 18.01 | 0.01 | 1.674 | 4.35 | 0.00 | 1.8 | 98.2 | 0.0 | 0.10 | 0.78 | 0.64 | 1.06 | 3.4 | 0.005 | 0.63 | 0.0 | 0.04 | 20.08 | 0.00 | 1.806 | 13.02 | 0.18 | 4.5 | 95.5 | 0.0 | 0.51 | 1.33 | 0.80 | 0.69 | 1.05 | 103616 | 5667 | 35 | 396 | 10 | 0 | 50237 | logfile |
✔ | 7LS5 | 23502 | 2023-07-17 | 2021-02-17 | 2.74 | 3.16 | 2.79 | 3.1 | 0.004 | 0.53 | 0.0 | 0.06 | 12.59 | 0.00 | 2.007 | 3.91 | 0.02 | 1.7 | 98.3 | 0.0 | 0.77 | 0.72 | 0.80 | 4.34 | 3.1 | 0.004 | 0.54 | 0.0 | 0.06 | 14.81 | 0.00 | 2.009 | 4.91 | 0.74 | 1.7 | 98.3 | 0.0 | 1.30 | 1.15 | 0.67 | 0.77 | 3.84 | 98042 | 6315 | 28 | 0 | 0 | 0 | 48895 | logfile |
✔ | 8E2K | 27841 | 2023-07-17 | 2022-08-15 | 3.21 | 3.74 | 3.62 | 3.3 | 0.004 | 0.61 | 0.0 | 0.04 | 15.39 | 0.01 | 1.972 | 6.69 | 0.83 | 2.3 | 97.7 | 0.0 | 1.10 | 0.70 | 0.67 | 1.38 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 15.56 | 0.00 | 1.883 | 9.69 | 0.28 | 3.5 | 96.4 | 0.0 | 1.02 | 1.42 | 0.72 | 0.73 | 1.33 | 96785 | 6160 | 5 | 0 | 0 | 0 | 48882 | logfile |