Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8APG	15570	2023-07-11	2022-08-09	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126490	7873	61	0	36	0	62387	logfile
✘	8APF	15568	2023-07-11	2022-08-09	4.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126490	7873	60	0	36	0	62387	logfile
✘	8APJ	15572	2023-07-11	2022-08-09	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126490	7873	60	0	36	0	62387	logfile
✘	7UND	26621	2023-07-11	2022-04-10	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	129454	8269	40	269	10	0	61541	logfile
✔	7YFZ	33802	2023-07-10	2022-07-09	3.19	2.87	2.92	2.9	0.006	0.86	3.0	0.05	12.31	0.01	1.749	18.46	0.20	6.2	93.6	0.2	-0.92	0.62	0.79	3.45	2.9	0.003	0.61	0.0	0.04	14.55	0.00	1.817	13.49	0.38	5.3	94.6	0.1	0.30	2.24	0.61	0.82	3.13	128850	8814	42	0	0	0	61470	logfile
✔	7U06	26255	2023-07-10	2022-02-17	4.2	3.74	—	3.7	0.005	0.86	0.0	0.05	14.08	0.01	1.997	5.33	0.01	11.1	88.8	0.1	-2.22	0.50	0.68	—	3.7	0.004	0.62	0.0	0.04	14.18	0.00	1.865	12.37	0.01	11.2	88.6	0.2	-1.99	0.53	0.52	0.70	—	124310	7391	31	0	764	0	60450	logfile
✔	7oHT	12908	2023-07-12	2021-05-11	4.7	6.83	4.99	3.5	0.002	0.48	0.0	0.04	17.51	0.00	1.855	6.77	1.28	5.3	94.6	0.1	0.83	0.81	0.61	—	3.4	0.006	0.65	0.0	0.04	18.10	0.00	1.799	24.06	0.02	9.9	89.9	0.2	-1.17	1.76	0.86	0.78	—	135365	5154	30	1618	3	0	59714	logfile
✔	6RW4	10021	2023-07-10	2019-06-03	2.97	2.14	2.98	2.8	0.008	0.67	0.0	0.08	13.18	0.01	1.650	2.42	0.06	3.0	97.0	0.1	-2.57	0.85	0.84	4.78	2.8	0.004	0.65	0.0	0.04	14.61	0.01	1.675	3.45	0.88	1.9	98.0	0.0	1.04	1.98	0.88	0.88	4.29	128080	5920	47	955	85	59	59211	logfile
✔	6SKL	10227	2023-07-07	2019-08-16	3.7	3.87	—	3.7	0.013	1.93	50.0	0.11	15.18	0.02	1.901	0.27	0.09	3.3	96.7	0.0	-1.69	0.71	0.72	1.97	3.7	0.004	0.63	0.0	0.04	16.54	0.00	1.787	8.63	0.19	4.0	96.0	0.0	0.38	3.48	0.74	0.78	1.67	118181	7251	24	59	11	0	58997	logfile
✘	7oWG	13097	2023-07-06	2021-06-18	4.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	114114	7078	8	0	110	0	57040	logfile
✘	8AUV	15674	2023-07-12	2022-08-25	2.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	131912	4773	72	1638	130	2372	56307	logfile
✔	6TMG	10520	2023-07-07	2019-12-04	2.8	2.79	2.73	2.8	0.008	0.94	0.0	0.04	15.61	0.00	1.898	3.39	0.69	2.9	97.1	0.0	-0.62	0.73	0.86	4.49	2.7	0.004	0.56	0.0	0.04	16.99	0.00	1.937	7.90	1.28	2.9	97.1	0.0	1.95	0.70	0.75	0.90	3.85	116594	7122	68	0	44	0	56046	logfile
✔	7oHU	12909	2023-07-10	2021-05-11	3.7	4.68	3.77	3.4	0.008	0.53	1.0	0.03	16.12	0.00	1.811	5.44	0.45	3.5	96.5	0.0	1.01	0.83	0.76	1.33	3.4	0.007	0.58	1.0	0.03	17.35	0.00	1.751	15.03	0.22	7.3	92.6	0.0	-0.57	1.32	0.85	0.81	1.56	127652	4202	29	1840	2	0	54773	logfile
✘	7RL5	24516	2023-07-11	2021-07-23	3.8	3.61	—	3.8	0.013	2.04	24.0	0.11	16.71	0.02	0.524	3.05	2.05	3.3	96.3	0.4	-1.86	0.40	0.52	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106032	6708	24	0	24	0	52716	logfile
✔	7RL0	24512	2023-07-11	2021-07-22	2.8	2.88	—	2.9	0.014	2.04	48.0	0.11	14.56	0.02	1.912	0.47	1.08	2.5	97.3	0.2	-1.35	0.40	0.48	2.19	2.9	0.009	0.80	0.0	0.05	17.05	0.01	1.762	12.73	2.68	3.8	96.0	0.2	0.07	1.16	0.52	0.69	2.15	106080	6708	24	0	48	0	52716	logfile
✔	6RQC	4980	2023-07-19	2019-05-15	4.4	4.57	4.38	4.4	0.012	1.28	1.0	0.07	18.21	0.01	1.965	9.13	0.54	10.4	89.5	0.1	-5.03	0.79	0.67	—	4.4	0.005	0.75	0.0	0.04	17.12	0.01	1.824	19.87	0.00	12.6	87.4	0.0	-2.74	3.23	0.80	0.70	—	105223	6174	23	176	15	0	51978	logfile
✘	6G2H	4343	2023-07-18	2018-03-23	4.6	4.69	—	4.5	0.013	1.94	46.0	0.11	13.54	0.01	1.921	14.05	2.29	8.3	91.0	0.7	-3.04	0.79	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103896	6454	6	0	0	0	51852	logfile
✔	8BZ1	16335	2023-07-19	2022-12-14	3.8	4.17	3.77	3.3	0.004	0.74	1.0	0.05	18.01	0.01	1.674	4.35	0.00	1.8	98.2	0.0	0.10	0.78	0.64	1.06	3.4	0.005	0.63	0.0	0.04	20.08	0.00	1.806	13.02	0.18	4.5	95.5	0.0	0.51	1.33	0.80	0.69	1.05	103616	5667	35	396	10	0	50237	logfile
✔	7LS5	23502	2023-07-17	2021-02-17	2.74	3.16	2.79	3.1	0.004	0.53	0.0	0.06	12.59	0.00	2.007	3.91	0.02	1.7	98.3	0.0	0.77	0.72	0.80	4.34	3.1	0.004	0.54	0.0	0.06	14.81	0.00	2.009	4.91	0.74	1.7	98.3	0.0	1.30	1.15	0.67	0.77	3.84	98042	6315	28	0	0	0	48895	logfile
✔	8E2K	27841	2023-07-17	2022-08-15	3.21	3.74	3.62	3.3	0.004	0.61	0.0	0.04	15.39	0.01	1.972	6.69	0.83	2.3	97.7	0.0	1.10	0.70	0.67	1.38	3.3	0.003	0.58	0.0	0.04	15.56	0.00	1.883	9.69	0.28	3.5	96.4	0.0	1.02	1.42	0.72	0.73	1.33	96785	6160	5	0	0	0	48882	logfile

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