Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VQ6	21317	2022-05-13	2020-02-04	3.9	4.53	—	4.2	0.009	0.95	1.0	0.06	10.96	0.00	1.809	2.63	0.30	2.6	97.2	0.3	0.63	0.77	0.71	1.23	4.2	0.004	0.87	0.0	0.05	14.59	0.00	1.944	21.53	0.33	4.5	95.5	0.0	0.54	1.81	0.81	0.82	0.93	62385	8454	35	0	2	0	0	logfile
✔	6UTF	20877	2022-05-18	2019-10-29	3.4	4.04	3.76	4.0	0.009	1.28	0.0	0.07	10.41	0.01	2.036	7.47	0.70	5.7	93.9	0.5	-3.27	0.75	0.77	1.47	4.0	0.004	0.95	0.0	0.05	16.75	0.01	2.055	17.46	0.84	6.4	93.5	0.1	-0.69	2.96	0.79	0.83	1.04	46494	6013	28	0	0	0	0	logfile
✔	6VQ8	21319	2022-05-13	2020-02-04	3.9	4.52	—	4.2	0.009	0.97	0.0	0.06	10.70	0.00	2.220	3.91	0.78	2.5	97.3	0.2	0.61	0.78	0.73	1.33	4.2	0.005	0.87	0.0	0.05	14.37	0.01	2.011	21.51	0.41	4.2	95.7	0.0	0.82	2.77	0.81	0.81	1.06	60714	8451	35	0	1	0	0	logfile
✔	6ZP7	11337	2022-05-15	2020-07-08	3.3	4.01	3.43	3.7	0.012	0.83	0.0	0.16	13.52	0.01	0.008	16.13	0.52	3.0	97.0	0.0	-0.93	0.64	0.59	1.49	3.7	0.003	0.75	0.0	0.11	15.23	0.00	0.791	10.44	0.28	3.5	96.5	0.0	0.07	1.33	0.81	0.83	2.09	23615	2861	33	0	92	0	0	logfile
✔	6Uo9	20823	2022-05-13	2019-10-14	4.8	5.30	—	4.9	0.006	1.36	1.0	0.07	13.42	0.01	2.227	6.52	1.07	8.0	92.0	0.0	-3.80	0.81	0.80	—	4.8	0.003	0.74	0.0	0.05	13.06	0.00	2.210	11.31	0.00	6.5	93.5	0.0	-0.29	0.62	0.81	0.81	—	9915	1365	9	0	14	0	0	logfile
✔	6XF5	22161	2022-05-15	2020-06-15	3.45	4.18	3.64	3.8	0.005	0.82	1.0	0.05	12.43	0.01	2.234	4.62	0.53	3.3	96.7	0.0	-0.31	0.84	0.80	1.82	3.8	0.004	0.57	0.0	0.04	13.78	0.01	2.164	9.07	0.04	3.8	96.2	0.0	0.63	1.23	0.86	0.86	2.04	24486	3027	18	0	60	0	0	logfile
✔	6VQ7	21318	2022-05-13	2020-02-04	4.0	4.63	—	4.2	0.009	0.98	2.0	0.06	10.86	0.01	2.219	3.92	0.61	2.5	97.3	0.2	0.65	0.79	0.72	—	4.2	0.004	0.86	0.0	0.05	14.28	0.00	1.949	21.56	0.46	4.3	95.7	0.0	0.70	1.47	0.82	0.81	—	62325	8454	35	0	2	0	0	logfile
✔	6Uo8	20822	2022-05-13	2019-10-14	3.63	3.97	—	3.8	0.004	0.73	0.0	0.05	13.47	0.01	2.290	4.07	0.00	7.8	92.2	0.0	-3.75	0.76	0.83	2.87	3.8	0.004	0.68	0.0	0.05	15.37	0.00	2.208	8.32	0.27	7.3	92.7	0.0	-0.93	1.26	0.77	0.83	2.85	10958	1385	7	0	15	0	0	logfile
✔	6SKi	10225	2022-05-12	2019-08-15	2.6	2.97	2.57	2.9	0.004	0.72	0.0	0.04	16.20	0.00	2.210	8.64	1.29	1.6	98.4	0.0	-0.80	0.63	0.83	4.83	2.9	0.003	0.55	0.0	0.04	16.67	0.00	2.267	7.50	1.94	3.1	96.9	0.0	0.90	0.51	0.63	0.84	4.48	4434	569	2	0	0	0	0	logfile
✔	6WW2	21927	2022-05-12	2020-05-07	3.7	4.24	—	4.0	0.010	1.08	0.0	0.06	14.27	0.01	2.240	5.79	0.00	10.3	89.6	0.1	-2.34	0.68	0.81	1.89	4.0	0.003	0.71	0.0	0.04	15.48	0.00	2.111	10.66	0.12	6.7	93.2	0.1	-0.81	0.45	0.68	0.80	1.42	7594	982	4	0	0	0	0	logfile
✔	6SJL	10218	2022-05-14	2019-08-13	2.6	3.00	2.64	2.9	0.013	0.87	0.0	0.05	14.60	0.01	1.985	13.14	0.05	5.7	94.1	0.2	-2.82	0.70	0.83	5.22	2.9	0.007	0.83	0.0	0.05	16.74	0.00	1.806	11.86	1.64	5.2	94.8	0.0	-0.57	1.14	0.71	0.85	4.26	19459	2537	6	0	0	0	0	logfile
✔	6LMT	0919	2022-05-14	2019-12-26	2.66	2.77	2.50	2.7	0.012	1.14	0.0	0.06	11.63	0.01	2.409	4.14	0.00	2.4	97.6	0.0	-4.48	0.52	0.75	5.03	2.7	0.003	0.67	0.0	0.04	16.17	0.00	2.262	10.09	1.45	1.6	98.4	0.0	2.29	0.56	0.70	0.88	3.49	17552	2032	16	0	32	0	0	logfile
✔	6XKL	22221	2022-05-15	2020-06-26	3.21	2.34	3.27	3.3	0.008	1.01	0.0	0.07	14.28	0.01	2.034	6.61	3.62	4.1	95.8	0.1	-0.34	0.73	0.76	3.00	3.3	0.006	0.82	0.0	0.05	15.37	0.01	2.180	5.81	0.21	2.9	97.1	0.0	0.25	0.47	0.75	0.78	2.64	22895	2920	17	0	50	0	0	logfile
✔	6XiW	22203	2022-05-13	2020-06-22	2.8	3.04	—	3.0	0.005	0.84	0.0	0.04	15.96	0.00	2.257	3.02	0.79	3.8	96.2	0.0	-1.79	0.55	0.85	3.36	3.0	0.011	1.04	1.0	0.04	17.48	0.01	2.056	7.52	1.82	2.4	97.6	0.0	1.34	2.51	0.52	0.87	2.82	11819	1400	4	0	12	5	0	logfile
✔	6TU3	10586	2022-05-18	2020-01-02	2.7	2.82	2.74	2.8	0.006	0.81	0.0	0.05	16.10	0.01	1.264	9.35	8.29	5.8	94.2	0.0	-2.57	0.76	0.83	2.83	2.8	0.006	0.78	0.0	0.05	17.67	0.01	2.068	7.13	5.59	4.9	95.1	0.0	-0.38	0.57	0.77	0.85	2.79	47002	6158	28	0	0	0	0	logfile
✔	6ZXJ	11522	2022-05-17	2020-07-29	3.5	3.86	—	3.8	0.016	1.31	3.0	0.07	12.15	0.01	2.048	18.91	0.26	8.3	91.1	0.6	-3.10	0.69	0.79	2.28	3.8	0.003	0.82	0.0	0.05	14.82	0.00	2.036	12.08	0.41	3.8	96.2	0.0	-0.10	0.63	0.67	0.77	1.87	38244	5099	9	0	0	0	0	logfile
✔	6XCM	22127	2022-05-15	2020-06-08	3.42	3.84	—	3.6	0.008	0.73	0.0	0.05	15.64	0.00	2.068	15.56	8.41	11.6	88.3	0.1	-4.31	0.79	0.85	2.08	3.6	0.004	0.65	0.0	0.04	15.76	0.00	2.095	11.77	0.46	6.7	93.2	0.0	-1.66	0.48	0.77	0.86	1.93	26772	3390	23	0	59	0	0	logfile
✔	6XCN	22128	2022-05-16	2020-06-08	3.66	3.89	—	3.7	0.011	0.90	0.0	0.05	14.05	0.00	2.117	15.11	1.08	10.2	89.8	0.0	-4.10	0.78	0.87	2.22	3.7	0.005	0.76	0.0	0.04	15.08	0.00	2.053	9.90	0.07	5.3	94.7	0.0	-1.13	0.99	0.77	0.86	1.63	28662	3636	27	0	60	0	0	logfile
✔	6TED	10480	2022-05-12	2019-11-11	3.1	3.20	3.00	3.1	0.025	1.40	2.0	0.08	16.29	0.01	1.961	19.51	2.09	7.9	91.5	0.6	-4.77	0.68	0.72	2.02	3.1	0.007	0.79	0.0	0.04	17.20	0.01	1.584	13.23	0.05	6.0	94.0	0.0	-1.70	0.69	0.69	0.73	1.85	57142	7357	31	106	10	0	0	logfile
✘	6VY2	21456	2022-05-14	2020-02-25	4.86	6.05	—	5.2	0.006	0.91	0.0	0.07	14.28	0.00	2.056	18.44	4.96	5.7	93.8	0.5	-2.41	0.82	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21426	2442	66	0	180	0	0	logfile

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