Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VTL	21381	2022-12-12	2020-02-12	3.65	4.17	—	4.0	0.004	0.79	0.0	0.05	13.87	0.01	2.306	6.05	0.00	3.4	96.6	0.0	-4.96	0.68	0.72	2.51	4.0	0.003	0.66	0.0	0.04	15.66	0.00	2.177	11.24	0.39	2.5	97.5	0.0	-1.42	0.52	0.71	0.77	1.96	10242	1338	6	0	6	0	0	logfile
✔	5MQ0	3541	2022-12-15	2016-12-19	4.17	4.40	—	4.2	0.010	1.54	21.0	0.11	14.99	0.01	0.679	7.94	2.73	7.7	91.4	0.9	-2.01	0.68	0.56	—	4.0	0.004	0.72	0.0	0.04	14.56	0.00	1.850	20.19	0.02	6.6	93.3	0.1	0.06	2.11	0.74	0.74	—	77441	9673	52	448	99	0	0	logfile
✔	5MPS	3539	2022-12-12	2016-12-18	3.85	4.03	—	3.9	0.008	1.41	13.0	0.11	15.52	0.01	1.479	7.76	2.50	8.5	90.6	0.9	-2.11	0.73	0.82	1.54	3.9	0.003	0.74	0.0	0.04	16.66	0.00	1.917	16.44	0.37	5.1	94.9	0.0	0.24	0.80	0.72	0.80	1.14	58929	6718	36	339	99	0	0	logfile
✔	5LJ3	4055	2022-12-12	2016-07-17	3.8	3.92	—	3.8	0.007	1.46	40.0	0.09	17.30	0.01	1.631	6.07	8.54	8.1	90.7	1.2	-1.69	0.70	0.81	1.37	3.8	0.003	0.73	0.0	0.04	17.04	0.00	2.044	15.45	0.49	5.1	94.7	0.2	0.36	0.86	0.69	0.78	1.41	63161	7305	45	458	142	0	0	logfile
✔	6JQo	9876	2022-12-16	2019-03-31	3.1	3.28	—	3.3	0.010	1.05	0.0	0.25	11.06	0.01	2.337	3.32	0.13	5.3	94.7	0.0	-3.99	0.79	0.87	4.25	3.3	0.003	0.60	0.0	0.04	14.63	0.00	2.086	4.86	0.09	5.0	95.0	0.0	-1.24	1.60	0.78	0.88	3.47	31254	4068	12	0	12	0	0	logfile
✔	6JQM	9874	2022-12-16	2019-03-31	3.3	3.54	—	3.5	0.005	0.83	0.0	0.05	10.76	0.01	2.304	5.87	0.06	5.8	94.2	0.0	-4.47	0.76	0.84	3.78	3.5	0.003	0.59	0.0	0.04	14.62	0.00	2.218	10.06	0.13	4.0	96.0	0.0	-1.10	2.69	0.78	0.86	2.80	30936	4068	12	0	6	0	0	logfile
✔	6JQN	9875	2022-12-16	2019-03-31	3.1	3.22	—	3.2	0.010	1.01	0.0	0.06	11.61	0.01	2.274	5.78	0.00	6.0	94.0	0.0	-4.15	0.77	0.84	3.79	3.2	0.004	0.63	0.0	0.04	15.20	0.00	2.094	12.01	0.25	4.5	95.5	0.0	-1.18	0.69	0.80	0.87	2.79	31278	4068	12	0	12	0	0	logfile
✔	6JQL	9873	2022-12-16	2019-03-31	2.9	3.07	—	3.1	0.004	0.81	0.0	0.05	10.10	0.01	2.305	6.89	0.16	4.8	95.2	0.0	-4.01	0.77	0.84	3.95	3.0	0.005	0.70	0.0	0.04	15.52	0.00	2.103	11.39	1.83	3.9	96.1	0.0	-0.72	1.30	0.78	0.88	3.32	30648	4068	6	0	0	0	0	logfile
✔	6SGZ	10191	2022-12-12	2019-08-05	3.9	4.15	—	4.0	0.003	0.70	0.0	0.04	13.52	0.00	2.203	12.28	0.00	10.3	89.4	0.3	-4.16	0.66	0.82	1.40	4.0	0.003	0.77	0.0	0.04	15.48	0.00	2.131	12.85	0.17	9.3	90.6	0.1	-0.43	1.26	0.65	0.82	0.81	11177	1505	5	0	0	0	0	logfile
✔	6SGW	10186	2022-12-14	2019-08-05	3.8	4.00	—	3.9	0.006	1.04	0.0	0.06	14.45	0.01	2.259	6.96	0.26	9.5	90.3	0.2	-4.52	0.63	0.79	1.47	3.9	0.004	0.76	0.0	0.04	15.79	0.01	2.180	12.99	0.52	9.7	90.2	0.1	-0.46	0.61	0.63	0.79	1.08	22448	3020	10	0	0	0	0	logfile
✔	6SGX	10187	2022-12-12	2019-08-05	3.7	3.85	—	3.8	0.006	1.03	1.0	0.06	13.90	0.01	2.280	5.23	0.26	9.9	90.0	0.1	-4.82	0.59	0.81	1.45	3.8	0.005	0.75	0.0	0.04	15.48	0.01	2.226	10.42	0.87	11.0	89.0	0.0	-0.64	0.51	0.59	0.81	1.34	11227	1512	5	0	0	0	0	logfile
✔	6UMM	20820	2022-12-15	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	12.01	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	4.1	0.003	0.92	0.0	0.05	14.46	0.00	2.090	19.20	0.37	3.7	96.3	0.0	0.74	1.20	0.62	0.82	0.16	23658	3184	10	0	0	0	0	logfile
✔	6EM1	3893	2022-12-17	2017-10-01	3.6	3.71	—	3.6	0.009	1.37	48.0	0.11	18.65	0.01	0.990	8.34	9.41	9.4	87.5	3.1	-4.15	0.79	0.83	1.48	3.5	0.008	0.82	0.0	0.04	18.37	0.01	1.991	20.07	0.62	8.7	91.0	0.3	-1.57	3.37	0.79	0.82	1.39	99980	7072	45	2008	2	0	0	logfile
✔	6QW6	4658	2022-12-16	2019-03-05	2.92	3.02	—	3.0	0.010	1.21	14.0	0.07	15.88	0.01	0.644	10.69	1.79	5.1	94.5	0.4	-3.43	0.62	0.67	2.44	3.0	0.003	0.69	0.0	0.04	17.37	0.00	1.926	16.49	2.17	4.0	96.0	0.0	-0.59	0.81	0.68	0.75	2.30	89236	10350	42	271	5	0	0	logfile
✔	6L31	0816	2022-12-14	2019-10-07	4.18	4.92	—	4.8	0.007	1.26	7.0	0.07	16.23	0.01	1.738	16.92	2.27	11.7	88.0	0.3	-4.45	0.38	0.72	—	4.9	0.004	0.81	0.0	0.05	13.78	0.01	2.095	23.07	0.00	10.2	89.8	0.0	-2.93	2.41	0.38	0.71	—	20905	2670	6	0	0	0	0	logfile
✔	6EM4	3889	2022-12-21	2017-10-01	4.1	4.76	—	4.0	0.008	1.44	0.0	0.12	20.82	0.00	0.855	2.35	0.00	7.5	90.4	2.1	-3.71	0.66	0.57	—	3.9	0.004	0.88	0.0	0.04	25.28	0.00	1.958	17.38	0.00	17.6	82.2	0.1	-2.11	3.15	0.80	0.63	—	45400	6013	37	1779	0	0	0	logfile
✔	5A8L	3099	2022-12-12	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	9.01	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.006	0.97	0.0	0.05	17.64	0.01	1.991	23.78	0.57	11.9	87.0	1.1	-2.68	1.53	0.23	0.63	0.73	12264	624	9	347	0	0	0	logfile
✔	6HD5	0201	2022-12-12	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.52	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.76	0.0	0.04	11.92	0.00	2.175	17.10	0.00	5.1	94.8	0.1	-0.25	2.04	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile
✘	5WP6	8871	2022-12-18	2017-08-03	3.8	4.03	—	3.8	0.062	4.81	0.0	0.06	10.88	0.01	2.083	3.10	0.30	6.7	93.3	0.0	-3.61	0.70	0.83	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29036	3908	8	0	8	0	0	logfile
✘	6AHD	9624	2022-12-19	2018-08-17	3.8	3.84	—	3.7	0.011	1.38	2.0	0.12	13.79	0.01	1.805	14.28	2.52	7.4	91.7	0.9	-3.55	0.51	0.52	2.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	85302	14082	65	531	3	0	0	logfile

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