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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6VTL | 21381 | 2022-12-12 | 2020-02-12 | 3.65 | 4.17 | — | 4.0 | 0.004 | 0.79 | 0.0 | 0.05 | 13.87 | 0.01 | 2.306 | 6.05 | 0.00 | 3.4 | 96.6 | 0.0 | -4.96 | 0.68 | 0.72 | 2.51 | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 15.66 | 0.00 | 2.177 | 11.24 | 0.39 | 2.5 | 97.5 | 0.0 | -1.42 | 0.52 | 0.71 | 0.77 | 1.96 | 10242 | 1338 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 5MQ0 | 3541 | 2022-12-15 | 2016-12-19 | 4.17 | 4.40 | — | 4.2 | 0.010 | 1.54 | 21.0 | 0.11 | 14.99 | 0.01 | 0.679 | 7.94 | 2.73 | 7.7 | 91.4 | 0.9 | -2.01 | 0.68 | 0.56 | — | 4.0 | 0.004 | 0.72 | 0.0 | 0.04 | 14.56 | 0.00 | 1.850 | 20.19 | 0.02 | 6.6 | 93.3 | 0.1 | 0.06 | 2.11 | 0.74 | 0.74 | — | 77441 | 9673 | 52 | 448 | 99 | 0 | 0 | logfile |
✔ | 5MPS | 3539 | 2022-12-12 | 2016-12-18 | 3.85 | 4.03 | — | 3.9 | 0.008 | 1.41 | 13.0 | 0.11 | 15.52 | 0.01 | 1.479 | 7.76 | 2.50 | 8.5 | 90.6 | 0.9 | -2.11 | 0.73 | 0.82 | 1.54 | 3.9 | 0.003 | 0.74 | 0.0 | 0.04 | 16.66 | 0.00 | 1.917 | 16.44 | 0.37 | 5.1 | 94.9 | 0.0 | 0.24 | 0.80 | 0.72 | 0.80 | 1.14 | 58929 | 6718 | 36 | 339 | 99 | 0 | 0 | logfile |
✔ | 5LJ3 | 4055 | 2022-12-12 | 2016-07-17 | 3.8 | 3.92 | — | 3.8 | 0.007 | 1.46 | 40.0 | 0.09 | 17.30 | 0.01 | 1.631 | 6.07 | 8.54 | 8.1 | 90.7 | 1.2 | -1.69 | 0.70 | 0.81 | 1.37 | 3.8 | 0.003 | 0.73 | 0.0 | 0.04 | 17.04 | 0.00 | 2.044 | 15.45 | 0.49 | 5.1 | 94.7 | 0.2 | 0.36 | 0.86 | 0.69 | 0.78 | 1.41 | 63161 | 7305 | 45 | 458 | 142 | 0 | 0 | logfile |
✔ | 6JQo | 9876 | 2022-12-16 | 2019-03-31 | 3.1 | 3.28 | — | 3.3 | 0.010 | 1.05 | 0.0 | 0.25 | 11.06 | 0.01 | 2.337 | 3.32 | 0.13 | 5.3 | 94.7 | 0.0 | -3.99 | 0.79 | 0.87 | 4.25 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 14.63 | 0.00 | 2.086 | 4.86 | 0.09 | 5.0 | 95.0 | 0.0 | -1.24 | 1.60 | 0.78 | 0.88 | 3.47 | 31254 | 4068 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 6JQM | 9874 | 2022-12-16 | 2019-03-31 | 3.3 | 3.54 | — | 3.5 | 0.005 | 0.83 | 0.0 | 0.05 | 10.76 | 0.01 | 2.304 | 5.87 | 0.06 | 5.8 | 94.2 | 0.0 | -4.47 | 0.76 | 0.84 | 3.78 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 14.62 | 0.00 | 2.218 | 10.06 | 0.13 | 4.0 | 96.0 | 0.0 | -1.10 | 2.69 | 0.78 | 0.86 | 2.80 | 30936 | 4068 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6JQN | 9875 | 2022-12-16 | 2019-03-31 | 3.1 | 3.22 | — | 3.2 | 0.010 | 1.01 | 0.0 | 0.06 | 11.61 | 0.01 | 2.274 | 5.78 | 0.00 | 6.0 | 94.0 | 0.0 | -4.15 | 0.77 | 0.84 | 3.79 | 3.2 | 0.004 | 0.63 | 0.0 | 0.04 | 15.20 | 0.00 | 2.094 | 12.01 | 0.25 | 4.5 | 95.5 | 0.0 | -1.18 | 0.69 | 0.80 | 0.87 | 2.79 | 31278 | 4068 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 6JQL | 9873 | 2022-12-16 | 2019-03-31 | 2.9 | 3.07 | — | 3.1 | 0.004 | 0.81 | 0.0 | 0.05 | 10.10 | 0.01 | 2.305 | 6.89 | 0.16 | 4.8 | 95.2 | 0.0 | -4.01 | 0.77 | 0.84 | 3.95 | 3.0 | 0.005 | 0.70 | 0.0 | 0.04 | 15.52 | 0.00 | 2.103 | 11.39 | 1.83 | 3.9 | 96.1 | 0.0 | -0.72 | 1.30 | 0.78 | 0.88 | 3.32 | 30648 | 4068 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SGZ | 10191 | 2022-12-12 | 2019-08-05 | 3.9 | 4.15 | — | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 13.52 | 0.00 | 2.203 | 12.28 | 0.00 | 10.3 | 89.4 | 0.3 | -4.16 | 0.66 | 0.82 | 1.40 | 4.0 | 0.003 | 0.77 | 0.0 | 0.04 | 15.48 | 0.00 | 2.131 | 12.85 | 0.17 | 9.3 | 90.6 | 0.1 | -0.43 | 1.26 | 0.65 | 0.82 | 0.81 | 11177 | 1505 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SGW | 10186 | 2022-12-14 | 2019-08-05 | 3.8 | 4.00 | — | 3.9 | 0.006 | 1.04 | 0.0 | 0.06 | 14.45 | 0.01 | 2.259 | 6.96 | 0.26 | 9.5 | 90.3 | 0.2 | -4.52 | 0.63 | 0.79 | 1.47 | 3.9 | 0.004 | 0.76 | 0.0 | 0.04 | 15.79 | 0.01 | 2.180 | 12.99 | 0.52 | 9.7 | 90.2 | 0.1 | -0.46 | 0.61 | 0.63 | 0.79 | 1.08 | 22448 | 3020 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SGX | 10187 | 2022-12-12 | 2019-08-05 | 3.7 | 3.85 | — | 3.8 | 0.006 | 1.03 | 1.0 | 0.06 | 13.90 | 0.01 | 2.280 | 5.23 | 0.26 | 9.9 | 90.0 | 0.1 | -4.82 | 0.59 | 0.81 | 1.45 | 3.8 | 0.005 | 0.75 | 0.0 | 0.04 | 15.48 | 0.01 | 2.226 | 10.42 | 0.87 | 11.0 | 89.0 | 0.0 | -0.64 | 0.51 | 0.59 | 0.81 | 1.34 | 11227 | 1512 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UMM | 20820 | 2022-12-15 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 12.01 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | 4.1 | 0.003 | 0.92 | 0.0 | 0.05 | 14.46 | 0.00 | 2.090 | 19.20 | 0.37 | 3.7 | 96.3 | 0.0 | 0.74 | 1.20 | 0.62 | 0.82 | 0.16 | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EM1 | 3893 | 2022-12-17 | 2017-10-01 | 3.6 | 3.71 | — | 3.6 | 0.009 | 1.37 | 48.0 | 0.11 | 18.65 | 0.01 | 0.990 | 8.34 | 9.41 | 9.4 | 87.5 | 3.1 | -4.15 | 0.79 | 0.83 | 1.48 | 3.5 | 0.008 | 0.82 | 0.0 | 0.04 | 18.37 | 0.01 | 1.991 | 20.07 | 0.62 | 8.7 | 91.0 | 0.3 | -1.57 | 3.37 | 0.79 | 0.82 | 1.39 | 99980 | 7072 | 45 | 2008 | 2 | 0 | 0 | logfile |
✔ | 6QW6 | 4658 | 2022-12-16 | 2019-03-05 | 2.92 | 3.02 | — | 3.0 | 0.010 | 1.21 | 14.0 | 0.07 | 15.88 | 0.01 | 0.644 | 10.69 | 1.79 | 5.1 | 94.5 | 0.4 | -3.43 | 0.62 | 0.67 | 2.44 | 3.0 | 0.003 | 0.69 | 0.0 | 0.04 | 17.37 | 0.00 | 1.926 | 16.49 | 2.17 | 4.0 | 96.0 | 0.0 | -0.59 | 0.81 | 0.68 | 0.75 | 2.30 | 89236 | 10350 | 42 | 271 | 5 | 0 | 0 | logfile |
✔ | 6L31 | 0816 | 2022-12-14 | 2019-10-07 | 4.18 | 4.92 | — | 4.8 | 0.007 | 1.26 | 7.0 | 0.07 | 16.23 | 0.01 | 1.738 | 16.92 | 2.27 | 11.7 | 88.0 | 0.3 | -4.45 | 0.38 | 0.72 | — | 4.9 | 0.004 | 0.81 | 0.0 | 0.05 | 13.78 | 0.01 | 2.095 | 23.07 | 0.00 | 10.2 | 89.8 | 0.0 | -2.93 | 2.41 | 0.38 | 0.71 | — | 20905 | 2670 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EM4 | 3889 | 2022-12-21 | 2017-10-01 | 4.1 | 4.76 | — | 4.0 | 0.008 | 1.44 | 0.0 | 0.12 | 20.82 | 0.00 | 0.855 | 2.35 | 0.00 | 7.5 | 90.4 | 2.1 | -3.71 | 0.66 | 0.57 | — | 3.9 | 0.004 | 0.88 | 0.0 | 0.04 | 25.28 | 0.00 | 1.958 | 17.38 | 0.00 | 17.6 | 82.2 | 0.1 | -2.11 | 3.15 | 0.80 | 0.63 | — | 45400 | 6013 | 37 | 1779 | 0 | 0 | 0 | logfile |
✔ | 5A8L | 3099 | 2022-12-12 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 12.36 | 0.00 | 1.435 | 9.01 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.006 | 0.97 | 0.0 | 0.05 | 17.64 | 0.01 | 1.991 | 23.78 | 0.57 | 11.9 | 87.0 | 1.1 | -2.68 | 1.53 | 0.23 | 0.63 | 0.73 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2022-12-12 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.52 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.003 | 0.76 | 0.0 | 0.04 | 11.92 | 0.00 | 2.175 | 17.10 | 0.00 | 5.1 | 94.8 | 0.1 | -0.25 | 2.04 | 0.45 | 0.55 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 5WP6 | 8871 | 2022-12-18 | 2017-08-03 | 3.8 | 4.03 | — | 3.8 | 0.062 | 4.81 | 0.0 | 0.06 | 10.88 | 0.01 | 2.083 | 3.10 | 0.30 | 6.7 | 93.3 | 0.0 | -3.61 | 0.70 | 0.83 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29036 | 3908 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 6AHD | 9624 | 2022-12-19 | 2018-08-17 | 3.8 | 3.84 | — | 3.7 | 0.011 | 1.38 | 2.0 | 0.12 | 13.79 | 0.01 | 1.805 | 14.28 | 2.52 | 7.4 | 91.7 | 0.9 | -3.55 | 0.51 | 0.52 | 2.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 85302 | 14082 | 65 | 531 | 3 | 0 | 0 | logfile |