Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6JP5	9866	2021-08-09	2019-03-25	2.9	3.03	—	3.1	0.016	1.53	4.0	0.12	14.54	0.01	1.921	28.19	6.11	7.7	91.7	0.6	-3.65	0.56	0.62	2.05	3.0	0.006	0.80	0.0	0.05	15.98	0.00	2.132	8.06	2.47	5.6	94.4	0.0	-0.64	0.88	0.68	0.85	1.95	22068	2694	7	0	39	0	0	logfile
✔	6FRK	4300	2021-08-08	2018-02-16	3.7	3.82	3.64	3.8	0.006	1.06	0.0	0.06	20.11	0.01	1.793	15.69	16.63	10.8	88.6	0.6	-5.20	0.69	0.84	1.14	3.8	0.006	0.76	0.0	0.04	18.43	0.01	1.387	15.48	0.63	9.5	90.4	0.1	-1.42	1.69	0.70	0.86	1.50	159957	8464	70	4268	159	0	0	logfile
✔	5GAG	8003	2021-08-12	2015-11-26	3.8	3.95	—	3.8	0.007	1.04	1.0	0.05	15.71	0.00	1.789	8.11	9.03	3.0	96.9	0.1	-3.35	0.79	0.90	1.98	3.8	0.005	0.66	0.0	0.04	15.38	0.01	1.161	15.81	0.52	4.1	95.8	0.1	-0.68	0.71	0.78	0.88	1.96	94030	3598	46	3049	473	0	0	logfile
✔	5NCo	3617	2021-08-13	2017-03-06	4.8	5.02	—	4.8	0.007	1.08	0.0	0.05	15.62	0.00	1.168	8.50	9.43	3.1	96.8	0.1	-2.95	0.70	0.76	—	4.8	0.004	0.71	0.0	0.04	15.58	0.01	0.807	29.77	0.03	6.3	93.6	0.1	-0.45	1.77	0.71	0.84	—	101694	4738	43	3112	46	0	0	logfile
✔	5TC1	8397	2021-08-08	2016-09-13	3.6	3.60	—	3.6	0.006	0.87	0.0	0.08	18.34	0.01	1.126	33.79	0.27	3.3	96.7	0.0	-3.80	0.19	0.77	4.30	3.6	0.005	0.63	0.0	0.04	17.04	0.00	2.182	7.25	0.45	5.4	94.6	0.0	-0.60	0.72	0.21	0.84	2.91	15393	1352	10	242	0	0	0	logfile
✔	6VBV	21145	2021-08-10	2019-12-19	3.5	3.57	3.40	3.5	0.004	0.71	6.0	0.05	15.13	0.00	2.070	12.68	0.72	7.2	92.7	0.1	-3.09	0.67	0.77	2.13	3.5	0.010	1.08	2.0	0.05	17.04	0.01	2.078	12.57	0.14	7.0	93.0	0.0	-0.87	2.57	0.70	0.79	1.79	31676	4000	11	0	3	0	0	logfile
✔	6JPA	9868	2021-08-09	2019-03-26	2.6	2.76	—	2.8	0.016	1.50	3.0	0.13	17.38	0.01	1.921	37.54	11.40	8.8	89.5	1.7	-3.83	0.54	0.61	1.56	2.7	0.005	0.80	0.0	0.05	16.96	0.01	2.150	8.50	2.43	4.8	95.1	0.1	-0.42	1.38	0.66	0.84	2.14	22232	2694	7	0	42	0	0	logfile
✔	3JCT	6615	2021-08-18	2016-03-09	3.08	3.17	—	3.2	0.007	1.09	7.0	0.09	19.87	0.00	1.197	4.18	8.22	7.2	90.3	2.5	-3.22	0.59	0.77	2.31	3.1	0.004	0.70	0.0	0.04	18.56	0.00	1.885	10.25	0.64	6.9	92.5	0.7	-0.98	1.54	0.63	0.81	1.80	156562	10503	64	3402	8	0	0	logfile
✔	6KZP	0792	2021-08-07	2019-09-25	3.1	2.67	—	3.0	0.020	1.88	1.0	0.28	14.95	0.01	2.390	10.16	2.44	3.3	96.4	0.3	-4.53	0.59	0.81	3.72	3.1	0.003	0.66	0.0	0.04	15.74	0.00	2.183	7.99	0.33	2.5	97.4	0.1	0.05	0.64	0.60	0.83	2.81	8557	1014	1	0	18	0	0	logfile
✔	6CS1	7579	2021-08-09	2018-03-19	4.6	4.79	4.84	6.8	0.005	0.85	0.0	0.05	8.80	0.01	2.229	7.26	0.00	7.2	92.8	0.0	-4.20	0.61	0.31	—	4.6	0.006	0.97	0.0	0.05	11.78	0.01	1.996	31.62	0.07	11.0	88.9	0.1	-2.91	2.36	0.73	0.63	—	25995	3202	6	0	75	0	0	logfile
✔	5GAE	8001	2021-08-12	2015-11-25	3.33	3.45	—	3.3	0.007	0.94	0.0	0.04	14.78	0.00	1.884	5.64	5.36	3.0	96.9	0.1	-2.76	0.79	0.88	2.24	3.3	0.006	0.66	0.0	0.04	15.24	0.00	1.184	12.42	0.73	3.9	96.0	0.1	-0.05	2.10	0.79	0.88	2.22	95192	3886	41	3007	349	0	0	logfile
✔	5WVE	6690	2021-08-11	2016-12-24	4.4	4.90	—	5.1	0.008	1.34	7.0	0.08	19.34	0.01	1.493	67.70	16.86	7.1	89.5	3.4	-0.75	0.49	0.15	—	4.6	0.004	0.86	0.0	0.04	13.40	0.00	1.793	28.52	0.00	8.7	90.6	0.7	-2.27	3.58	0.83	0.70	—	78605	9766	39	0	21	0	0	logfile
✔	6CP3	7546	2021-08-11	2018-03-13	3.8	3.87	—	3.8	0.009	1.18	0.0	0.06	10.70	0.01	2.224	8.06	0.36	7.6	92.2	0.2	-3.89	0.71	0.76	1.55	3.8	0.010	0.98	0.0	0.04	14.98	0.01	1.818	21.88	0.41	5.4	94.5	0.1	-1.14	2.89	0.74	0.81	1.22	38814	5104	32	0	5	0	0	logfile
✘	6CP5	7547	2021-08-07	2018-03-13	4.2	4.19	—	4.2	0.003	0.83	0.0	0.04	10.90	0.00	1.205	23.98	2.24	7.2	92.0	0.8	-4.36	0.50	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9413	1234	19	0	4	0	0	logfile
✔	6MAR	9062	2021-08-08	2018-08-28	4.5	4.66	4.48	4.4	0.006	0.90	0.0	0.06	11.04	0.01	2.031	7.46	0.26	9.8	90.0	0.2	-3.41	0.78	0.81	—	4.4	0.006	0.78	0.0	0.05	12.79	0.01	2.037	19.36	0.00	10.3	89.7	0.0	-2.24	1.40	0.78	0.82	—	19211	2225	16	0	130	0	0	logfile
✔	6N2D	9327	2021-08-07	2018-11-12	3.3	3.50	3.29	3.6	0.008	1.21	0.0	0.07	11.75	0.01	1.610	14.11	0.71	2.6	97.4	0.0	-2.81	0.61	0.78	1.68	3.6	0.004	0.81	0.0	0.04	16.29	0.01	2.145	18.32	1.13	2.0	98.0	0.0	1.96	0.64	0.63	0.80	1.01	7162	993	13	0	0	0	0	logfile
✔	6PBX	20294	2021-08-09	2019-06-14	4.0	4.12	—	4.0	0.006	0.83	0.0	0.05	14.04	0.01	2.264	6.05	0.00	3.8	96.2	0.0	-3.07	0.68	0.67	—	4.0	0.003	0.70	0.0	0.04	15.11	0.00	2.195	12.76	0.09	4.0	96.0	0.0	1.61	0.76	0.73	0.78	—	23028	3152	8	0	0	0	0	logfile
✔	6PWE	20506	2021-08-08	2019-07-22	3.95	4.04	—	4.0	0.010	0.93	0.0	0.05	27.27	0.01	2.264	5.37	0.00	7.4	92.3	0.3	-6.65	0.70	0.80	2.98	4.0	0.005	0.70	0.0	0.04	28.69	0.01	2.063	12.93	0.97	4.9	95.1	0.0	-1.96	1.44	0.70	0.81	1.70	11923	744	10	294	0	0	0	logfile
✔	6A95	6997	2021-08-08	2018-07-11	2.6	2.68	—	2.7	0.011	1.06	0.0	0.07	10.74	0.01	2.354	4.68	1.05	7.2	92.5	0.4	-5.57	0.62	0.81	4.01	2.7	0.011	1.21	0.0	0.04	15.49	0.00	2.216	7.34	1.93	6.9	92.9	0.1	-0.39	1.29	0.66	0.85	3.02	11002	1364	3	0	9	1	0	logfile
✔	6VRW	21372	2021-08-08	2020-02-10	3.71	4.25	3.76	4.0	0.006	0.83	0.0	0.06	13.56	0.00	2.301	4.29	0.40	7.8	92.2	0.0	-4.95	0.81	0.81	2.33	4.0	0.003	0.57	0.0	0.05	14.84	0.00	2.130	8.23	0.13	6.2	93.8	0.0	-1.96	0.46	0.82	0.83	2.53	14568	1671	12	0	96	0	0	logfile

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