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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7T3Q | 25668 | 2024-03-14 | 2021-12-08 | 3.3 | 3.64 | 3.39 | 3.6 | 0.004 | 0.54 | 0.0 | 0.04 | 14.70 | 0.00 | 2.049 | 7.69 | 0.00 | 4.5 | 95.5 | 0.0 | 1.74 | 0.70 | 0.74 | 2.52 | 3.6 | 0.006 | 0.70 | 0.0 | 0.04 | 16.46 | 0.00 | 2.108 | 12.35 | 2.31 | 4.9 | 95.1 | 0.0 | 0.50 | 0.82 | 0.74 | 0.80 | 2.15 | 68124 | 8336 | 8 | 0 | 88 | 0 | 0 | logfile |
✔ | 7USW | 26741 | 2024-03-16 | 2022-04-26 | 3.1 | 3.48 | 3.14 | 3.5 | 0.004 | 0.78 | 0.0 | 0.04 | 17.02 | 0.01 | 2.254 | 7.09 | 0.21 | 3.1 | 96.9 | 0.0 | 2.17 | 0.63 | 0.80 | 2.13 | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 16.29 | 0.00 | 2.240 | 5.42 | 1.66 | 3.4 | 96.6 | 0.0 | 2.35 | 0.23 | 0.63 | 0.82 | 2.19 | 14322 | 1676 | 12 | 0 | 68 | 0 | 0 | logfile |
✔ | 8DD8 | 27336 | 2024-03-15 | 2022-06-17 | 3.4 | 3.50 | 3.43 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 15.62 | 0.00 | 2.211 | 7.34 | 0.00 | 4.0 | 95.9 | 0.1 | -0.65 | 0.81 | 0.81 | 2.33 | 3.4 | 0.002 | 0.51 | 0.0 | 0.04 | 16.84 | 0.00 | 2.188 | 10.11 | 0.60 | 4.1 | 95.9 | 0.0 | 0.47 | 1.22 | 0.83 | 0.84 | 1.89 | 10492 | 1272 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o19 | 12693 | 2024-03-22 | 2021-03-29 | 2.9 | 3.19 | 2.93 | 2.6 | 0.016 | 1.84 | 0.0 | 0.05 | 22.50 | 0.02 | 1.430 | 6.55 | 0.04 | 3.7 | 96.2 | 0.1 | -1.50 | 0.82 | 0.86 | 3.50 | 2.6 | 0.006 | 0.68 | 0.0 | 0.04 | 22.34 | 0.01 | 1.728 | 7.33 | 2.19 | 3.7 | 96.3 | 0.1 | -0.04 | 0.36 | 0.85 | 0.88 | 3.45 | 145019 | 5694 | 74 | 4635 | 173 | 793 | 0 | logfile |
✔ | 7DDD | 30651 | 2024-03-19 | 2020-10-28 | 3.0 | 3.36 | — | 3.3 | 0.003 | 0.71 | 0.0 | 0.05 | 8.16 | 0.01 | 2.248 | 5.97 | 0.00 | 3.6 | 96.4 | 0.1 | -3.86 | 0.67 | 0.64 | 1.47 | 3.3 | 0.004 | 0.71 | 0.0 | 0.05 | 15.50 | 0.00 | 2.108 | 16.20 | 2.64 | 3.9 | 96.1 | 0.0 | -1.24 | 1.82 | 0.73 | 0.78 | 2.58 | 25503 | 3264 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T3T | 25670 | 2024-03-15 | 2021-12-08 | 3.8 | 4.12 | 3.99 | 4.0 | 0.003 | 0.53 | 0.0 | 0.04 | 14.36 | 0.00 | 2.071 | 8.23 | 0.05 | 4.3 | 95.7 | 0.0 | 1.40 | 0.73 | 0.78 | 1.63 | 4.0 | 0.006 | 0.80 | 0.0 | 0.04 | 16.76 | 0.00 | 2.001 | 17.09 | 3.09 | 5.6 | 94.4 | 0.0 | 0.32 | 0.94 | 0.75 | 0.84 | 1.31 | 68516 | 8408 | 8 | 0 | 92 | 0 | 0 | logfile |
✔ | 7SAD | 24949 | 2024-03-19 | 2021-09-22 | 3.96 | 3.71 | — | 4.0 | 0.006 | 0.78 | 6.0 | 0.05 | 13.29 | 0.01 | 1.515 | 9.19 | 0.49 | 5.4 | 94.4 | 0.2 | -0.41 | 0.63 | 0.78 | 1.81 | 4.0 | 0.004 | 0.67 | 0.0 | 0.04 | 14.80 | 0.00 | 2.144 | 9.15 | 2.36 | 7.4 | 92.4 | 0.1 | -0.58 | 0.44 | 0.64 | 0.79 | 1.68 | 23082 | 3160 | 11 | 0 | 16 | 0 | 0 | logfile |
✘ | 6JiY | 9837 | 2024-03-12 | 2019-02-24 | 3.9 | 4.05 | — | 3.9 | 0.008 | 1.06 | 1.0 | 0.05 | 15.54 | 0.01 | 2.203 | 7.76 | 0.47 | 12.2 | 87.5 | 0.2 | -5.76 | 0.73 | 0.78 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115288 | 15056 | 20 | 0 | 32 | 0 | 0 | logfile |
✔ | 7SYi | 25529 | 2024-03-17 | 2021-11-25 | 4.5 | 3.59 | 4.35 | 3.4 | 0.004 | 0.87 | 0.0 | 0.04 | 22.09 | 0.01 | 2.213 | 5.70 | 0.00 | 6.6 | 93.3 | 0.0 | -2.89 | 0.67 | 0.65 | — | 3.4 | 0.003 | 0.65 | 0.0 | 0.04 | 22.09 | 0.00 | 2.038 | 16.78 | 0.00 | 7.7 | 92.3 | 0.0 | -1.87 | 1.42 | 0.68 | 0.67 | — | 78761 | 4891 | 38 | 1859 | 2 | 0 | 0 | logfile |
✔ | 7ASo | 11902 | 2024-03-15 | 2020-10-27 | 3.11 | 3.89 | — | 3.0 | 0.007 | 1.05 | 3.0 | 0.10 | 27.01 | 0.00 | 1.837 | 24.01 | 13.50 | 22.1 | 76.1 | 1.9 | -5.91 | 0.58 | 0.45 | 0.91 | 3.0 | 0.007 | 0.78 | 0.0 | 0.04 | 25.74 | 0.00 | 1.973 | 21.00 | 4.80 | 13.9 | 86.0 | 0.2 | -3.61 | 1.40 | 0.87 | 0.87 | 1.33 | 125530 | 4741 | 47 | 4249 | 0 | 0 | 0 | logfile |
✔ | 7SAA | 24946 | 2024-03-19 | 2021-09-22 | 2.97 | 3.19 | — | 3.1 | 0.012 | 1.16 | 44.0 | 0.08 | 14.41 | 0.01 | 1.720 | 8.33 | 2.99 | 4.8 | 94.9 | 0.3 | -0.87 | 0.73 | 0.87 | 2.97 | 3.1 | 0.003 | 0.63 | 0.0 | 0.04 | 15.96 | 0.01 | 2.160 | 6.83 | 2.49 | 5.5 | 94.4 | 0.2 | -0.02 | 0.98 | 0.74 | 0.89 | 2.85 | 23618 | 3164 | 11 | 0 | 14 | 0 | 0 | logfile |
✔ | 8C0B | 16357 | 2024-03-21 | 2022-12-16 | 3.98 | 2.77 | 4.01 | 2.1 | 0.003 | 0.79 | 0.0 | 0.05 | 12.77 | 0.01 | 2.172 | 3.80 | 0.51 | 3.9 | 95.9 | 0.2 | -0.95 | 0.69 | 0.68 | 2.06 | 2.1 | 0.005 | 0.92 | 2.0 | 0.05 | 16.03 | 0.01 | 1.852 | 15.61 | 3.28 | 3.7 | 96.3 | 0.0 | 0.15 | 1.34 | 0.70 | 0.69 | 1.49 | 29816 | 3768 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oX5 | 17257 | 2024-03-14 | 2023-05-01 | 2.9 | 3.29 | 2.97 | 3.3 | 0.006 | 1.13 | 0.0 | 0.04 | 14.36 | 0.00 | 1.430 | 9.98 | 0.00 | 6.0 | 94.0 | 0.0 | -1.86 | 0.53 | 0.61 | 1.95 | 3.3 | 0.003 | 0.90 | 0.0 | 0.04 | 16.02 | 0.00 | 2.083 | 15.02 | 1.53 | 5.1 | 94.9 | 0.0 | -1.48 | 0.54 | 0.48 | 0.61 | 1.48 | 9751 | 1197 | 6 | 0 | 8 | 1 | 0 | logfile |
✘ | 5TAY | 8389 | 2024-03-14 | 2016-09-10 | 4.6 | 4.71 | 4.77 | 4.5 | 0.004 | 0.86 | 4.0 | 0.05 | 9.86 | 0.01 | 1.374 | 4.89 | 0.46 | 10.4 | 89.4 | 0.2 | -4.90 | 0.75 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121276 | 13500 | 12 | 0 | 3712 | 0 | 0 | logfile |
✘ | 6Ji8 | 9833 | 2024-03-12 | 2019-02-20 | 3.6 | 3.80 | — | 3.7 | 0.010 | 1.26 | 8.0 | 0.06 | 11.98 | 0.01 | 2.196 | 8.60 | 1.03 | 10.5 | 89.0 | 0.5 | -4.77 | 0.73 | 0.77 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115060 | 15024 | 16 | 0 | 4 | 0 | 0 | logfile |
✔ | 5TA3 | 8377 | 2024-03-14 | 2016-09-09 | 4.4 | 4.71 | 4.62 | 4.5 | 0.004 | 0.90 | 0.0 | 0.05 | 10.08 | 0.01 | 1.374 | 5.28 | 0.54 | 10.8 | 89.1 | 0.1 | -4.86 | 0.81 | 0.78 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 11.99 | 0.00 | 2.108 | 14.68 | 0.00 | 10.7 | 89.2 | 0.1 | -1.24 | 1.50 | 0.81 | 0.79 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✘ | 7WFE | 32463 | 2024-03-23 | 2021-12-26 | 3.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35123 | 3216 | 30 | 0 | 205 | 0 | 0 | logfile |
✔ | 7RA3 | 24334 | 2024-03-15 | 2021-06-29 | 3.24 | 3.47 | — | 3.3 | 0.005 | 0.91 | 0.0 | 0.05 | 13.68 | 0.00 | 2.074 | 6.99 | 0.35 | 7.1 | 92.9 | 0.0 | -1.87 | 0.69 | 0.80 | 2.16 | 3.3 | 0.003 | 0.72 | 0.0 | 0.04 | 16.08 | 0.00 | 2.141 | 13.33 | 2.99 | 4.1 | 95.9 | 0.0 | -0.58 | 1.06 | 0.69 | 0.82 | 1.36 | 10802 | 1381 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GH6 | 40033 | 2024-03-15 | 2023-03-09 | 3.08 | 3.04 | 3.06 | 3.1 | 0.006 | 1.10 | 0.0 | 0.06 | 23.18 | 0.01 | 2.128 | 1.10 | 0.13 | 2.0 | 97.9 | 0.1 | -1.06 | 0.64 | 0.81 | 3.69 | 3.0 | 0.003 | 0.60 | 0.0 | 0.04 | 23.85 | 0.00 | 1.977 | 6.46 | 1.99 | 2.5 | 97.4 | 0.1 | 0.73 | 1.00 | 0.66 | 0.84 | 3.16 | 10785 | 898 | 6 | 177 | 4 | 0 | 0 | logfile |
✔ | 7WLY | 32594 | 2024-03-20 | 2022-01-14 | 3.4 | 3.69 | — | 3.5 | 0.007 | 0.86 | 0.0 | 0.06 | 13.27 | 0.01 | 2.207 | 9.99 | 0.97 | 7.1 | 92.9 | 0.0 | -2.55 | 0.80 | 0.79 | 1.99 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 14.11 | 0.00 | 2.112 | 10.04 | 2.14 | 4.4 | 95.6 | 0.0 | -0.95 | 0.56 | 0.81 | 0.82 | 1.86 | 28550 | 3627 | 12 | 0 | 31 | 0 | 0 | logfile |