Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WiC	32528	2023-11-14	2022-01-03	2.8	2.21	—	1.9	0.005	0.62	0.0	0.05	12.93	0.00	2.176	7.87	0.00	2.7	97.3	0.0	0.61	0.76	0.76	3.53	1.9	0.003	0.58	0.0	0.04	15.57	0.00	2.173	7.26	1.11	3.1	96.9	0.0	1.17	0.37	0.78	0.80	3.11	9048	1158	6	0	0	0	0	logfile
✔	8B9C	15924	2023-11-16	2022-10-05	4.6	5.42	4.24	4.9	0.006	0.80	0.0	0.05	13.25	0.01	1.941	0.64	0.51	2.1	97.9	0.0	0.52	0.78	0.63	—	4.9	0.004	0.62	0.0	0.04	13.28	0.00	1.681	12.76	0.00	5.0	95.0	0.0	-0.06	2.55	0.83	0.78	—	117985	7179	26	56	12	0	59018	logfile
✔	7LV9	23530	2023-11-14	2021-02-24	4.5	7.82	4.59	4.4	0.003	0.64	0.0	0.04	27.26	0.00	1.334	3.02	0.00	3.2	96.8	0.0	-3.35	0.82	0.66	—	4.4	0.005	0.67	0.0	0.04	29.32	0.00	2.143	21.19	0.00	3.9	96.1	0.0	1.21	1.93	0.90	0.85	—	8238	581	8	190	0	0	0	logfile
✘	8A1U	15089	2023-11-20	2022-06-02	2.86	2.69	2.74	2.8	0.004	0.56	0.0	0.04	15.92	0.00	2.034	3.69	0.71	1.7	98.3	0.0	1.90	0.57	0.72	2.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29956	1898	17	0	17	187	14698	logfile
✔	8HC5	34652	2023-11-15	2022-11-01	3.43	3.51	3.37	3.6	0.002	0.53	0.0	0.04	15.57	0.00	2.249	5.34	0.00	4.0	96.0	0.0	-0.79	0.60	0.59	1.15	3.6	0.003	0.59	0.0	0.04	15.73	0.00	2.091	9.89	0.31	5.1	94.9	0.0	-0.44	0.58	0.69	0.73	2.01	11400	1493	6	0	1	0	0	logfile
✘	7BP8	30147	2023-11-21	2020-03-21	3.9	4.00	—	3.9	0.008	1.38	0.0	0.08	15.25	0.01	2.313	5.30	0.18	5.3	94.7	0.0	-3.18	0.80	0.80	1.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35190	4440	12	0	12	0	0	logfile
✔	6NPK	0472	2023-11-14	2019-01-17	3.6	3.66	—	3.6	0.004	0.82	0.0	0.05	13.02	0.01	2.320	3.89	6.13	6.6	93.4	0.0	-5.05	0.58	0.80	2.02	3.7	0.003	0.61	0.0	0.04	14.36	0.00	2.173	9.10	0.27	6.3	93.7	0.0	0.11	1.23	0.61	0.81	2.02	7134	944	2	0	0	0	0	logfile
✔	7oHC	12900	2023-11-15	2021-05-10	2.5	3.15	—	2.9	0.005	0.86	0.0	0.05	29.78	0.01	2.193	4.51	0.16	1.9	98.1	0.0	0.04	0.84	0.82	3.50	2.9	0.004	0.60	0.0	0.03	29.27	0.00	2.138	8.09	1.57	2.1	97.9	0.0	2.63	1.12	0.86	0.86	2.93	12019	764	10	290	0	0	0	logfile
✘	7MYo	24082	2023-11-15	2021-05-21	2.92	3.27	2.93	3.3	0.005	0.89	0.0	0.05	15.08	0.01	2.225	9.92	0.59	5.9	94.1	0.0	-1.97	0.57	0.66	0.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10634	1278	2	0	1	0	0	logfile
✔	8DAR	27273	2023-11-20	2022-06-14	3.0	3.42	3.13	3.3	0.004	0.60	0.0	0.04	11.66	0.00	2.011	6.25	1.93	4.7	95.3	0.0	1.67	0.81	0.83	2.41	3.3	0.003	0.59	0.0	0.04	14.91	0.00	2.166	6.96	1.87	4.4	95.5	0.0	1.59	0.65	0.76	0.82	2.02	30157	3827	15	0	14	0	0	logfile
✔	7XoW	33361	2023-11-14	2022-05-01	3.1	3.48	3.17	3.6	0.005	0.86	0.0	0.05	13.16	0.01	2.198	9.68	0.11	4.7	95.3	0.0	-2.76	0.57	0.74	2.81	3.6	0.003	0.66	0.0	0.04	15.24	0.00	2.126	8.03	0.22	5.3	94.7	0.0	-0.22	1.16	0.54	0.73	1.93	8566	1122	6	0	0	0	0	logfile
✘	6VL5	21230	2023-11-16	2020-01-22	4.5	4.57	4.20	4.4	0.019	1.72	0.0	0.10	10.23	0.01	2.242	0.64	0.20	1.2	98.8	0.0	0.88	0.79	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15039	1719	42	0	105	0	0	logfile
✔	7JLo	22375	2023-11-15	2020-07-30	3.4	3.49	3.31	3.5	0.004	0.60	0.0	0.04	14.68	0.00	2.203	5.74	0.46	5.2	94.8	0.0	-2.15	0.72	0.86	2.66	3.5	0.003	0.53	0.0	0.04	16.03	0.00	2.217	5.41	0.08	3.9	96.1	0.0	1.01	1.27	0.71	0.87	2.53	11964	1455	3	0	0	0	0	logfile
✔	7Ai5	11791	2023-11-15	2020-09-26	4.4	4.82	4.47	4.4	0.014	1.85	5.0	0.10	17.79	0.01	2.472	3.75	1.14	3.3	96.7	0.0	-2.02	0.86	0.70	—	4.3	0.003	0.66	0.0	0.04	16.95	0.00	2.155	14.39	0.00	2.1	97.9	0.0	0.17	0.95	0.89	0.78	—	13376	1576	6	44	2	0	0	logfile
✔	6VXJ	21440	2023-11-14	2020-02-22	4.1	4.12	—	4.1	0.007	1.02	0.0	0.05	16.27	0.01	2.251	6.79	3.32	9.5	90.5	0.0	-5.74	0.57	0.78	—	4.1	0.006	0.89	0.0	0.05	13.89	0.00	2.100	15.36	0.00	9.4	90.6	0.0	-2.29	0.73	0.58	0.80	—	8895	1132	4	0	3	0	0	logfile
✔	7A02	11591	2023-11-17	2020-08-06	3.0	3.22	—	3.2	0.008	0.74	0.0	0.05	12.61	0.00	2.323	8.00	0.00	8.2	91.8	0.0	-1.94	0.60	0.85	3.89	3.2	0.005	0.68	0.0	0.05	15.24	0.00	2.126	6.39	5.50	6.6	93.4	0.0	-1.20	0.95	0.59	0.88	4.15	18699	2576	23	0	0	0	0	logfile
✔	7S65	24850	2023-11-18	2021-09-13	3.2	3.04	3.23	3.3	0.014	1.46	0.0	0.07	11.66	0.01	1.385	8.25	0.26	2.0	98.0	0.0	0.19	0.64	0.74	3.55	3.2	0.004	0.66	0.0	0.04	15.85	0.00	1.826	9.94	0.26	2.6	97.4	0.0	0.35	0.69	0.65	0.78	3.14	22049	2760	12	0	24	0	0	logfile
✔	7XJK	33230	2023-11-14	2022-04-18	3.3	3.56	3.42	3.5	0.005	0.65	0.0	0.04	13.52	0.01	2.172	11.97	0.00	2.7	97.3	0.0	0.32	0.64	0.77	2.84	3.6	0.003	0.58	0.0	0.04	15.69	0.00	2.163	10.24	0.34	3.0	97.0	0.0	0.89	0.35	0.64	0.79	2.31	8570	1139	6	0	0	0	0	logfile
✔	7VAD	31837	2023-11-13	2021-08-29	3.41	4.00	—	3.9	0.002	0.59	0.0	0.04	13.01	0.01	2.227	8.39	0.00	7.1	92.9	0.0	0.34	0.64	0.76	1.49	3.9	0.003	0.79	0.0	0.05	16.16	0.00	2.118	14.59	1.08	8.1	91.9	0.0	0.14	0.78	0.62	0.81	2.30	5697	743	3	0	0	0	0	logfile
✔	7ZQB	14869	2023-11-20	2022-04-29	3.88	3.88	3.85	3.8	0.003	0.56	0.0	0.05	13.10	0.00	1.812	10.84	0.03	4.6	95.4	0.0	-1.99	0.83	0.78	1.89	3.7	0.004	0.65	0.0	0.05	14.90	0.00	2.123	12.97	0.26	4.4	95.6	0.0	-1.10	0.83	0.86	0.85	1.96	86580	11109	36	0	0	0	0	logfile

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