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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8FAE | 28954 | 2024-04-09 | 2022-11-26 | 3.8 | 4.20 | 3.79 | 3.9 | 0.013 | 1.72 | 7.0 | 0.12 | 24.79 | 0.03 | 2.228 | 8.50 | 5.71 | 8.5 | 90.6 | 0.9 | -1.70 | 0.74 | 0.64 | 1.10 | 4.0 | 0.004 | 0.81 | 0.0 | 0.05 | 13.27 | 0.00 | 2.051 | 12.21 | 3.01 | 6.8 | 93.1 | 0.1 | -0.95 | 0.87 | 0.81 | 0.81 | 1.15 | 17693 | 1832 | 79 | 0 | 250 | 0 | 0 | logfile |
✔ | 8CEU | 16613 | 2024-04-14 | 2023-02-02 | 1.83 | 1.74 | 1.82 | 1.7 | 0.009 | 1.56 | 16.0 | 0.11 | 22.49 | 0.02 | 1.830 | 0.53 | 0.65 | 2.7 | 97.2 | 0.0 | -1.11 | 0.79 | 0.85 | 6.99 | 1.7 | 0.006 | 0.92 | 16.0 | 0.05 | 22.81 | 0.01 | 1.795 | 4.08 | 0.77 | 2.0 | 98.0 | 0.0 | -0.32 | 0.19 | 0.84 | 0.89 | 6.88 | 92838 | 3076 | 79 | 2872 | 304 | 6830 | 0 | logfile |
✔ | 7NSH | 12567 | 2024-04-07 | 2021-03-07 | 3.2 | 3.39 | 3.12 | 3.3 | 0.003 | 0.54 | 0.0 | 0.05 | 19.44 | 0.00 | 1.187 | 7.76 | 0.02 | 4.2 | 95.8 | 0.1 | 0.71 | 0.80 | 0.84 | 2.70 | 3.3 | 0.009 | 0.75 | 0.0 | 0.05 | 20.18 | 0.01 | 0.874 | 8.89 | 2.29 | 5.4 | 94.6 | 0.0 | 0.37 | 1.22 | 0.80 | 0.90 | 2.66 | 112448 | 9643 | 79 | 1611 | 229 | 2 | 0 | logfile |
✘ | 7F4V | 31455 | 2024-04-09 | 2021-06-21 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 67641 | 6336 | 78 | 0 | 453 | 402 | 0 | logfile |
✔ | 6NF2 | 9359 | 2024-04-14 | 2018-12-18 | 3.7 | 4.23 | 3.72 | 4.0 | 0.009 | 1.27 | 0.0 | 0.07 | 21.01 | 0.01 | 2.242 | 6.24 | 0.45 | 6.2 | 93.7 | 0.2 | -2.90 | 0.81 | 0.85 | 2.53 | 4.0 | 0.004 | 0.77 | 0.0 | 0.05 | 15.15 | 0.00 | 2.035 | 12.95 | 2.39 | 6.4 | 93.6 | 0.0 | -0.95 | 0.66 | 0.81 | 0.85 | 2.42 | 32604 | 3867 | 78 | 0 | 186 | 0 | 0 | logfile |
✘ | 7S3D | 24821 | 2024-04-11 | 2021-09-05 | 2.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75150 | 7074 | 78 | 0 | 417 | 333 | 0 | logfile |
✔ | 6GB2 | 4370 | 2024-04-06 | 2018-04-13 | 3.2 | 3.20 | 3.10 | 3.1 | 0.007 | 1.14 | 0.0 | 0.05 | 21.21 | 0.01 | 1.865 | 9.38 | 10.13 | 4.0 | 95.9 | 0.2 | -2.82 | 0.85 | 0.89 | 2.34 | 3.1 | 0.003 | 0.63 | 0.0 | 0.04 | 20.99 | 0.00 | 1.929 | 10.47 | 2.81 | 3.4 | 96.5 | 0.1 | 0.76 | 0.74 | 0.84 | 0.88 | 2.23 | 111109 | 9312 | 78 | 1687 | 225 | 2 | 0 | logfile |
✔ | 7CBL | 30335 | 2024-04-15 | 2020-06-12 | 2.8 | 3.16 | — | 3.1 | 0.006 | 0.59 | 0.0 | 0.05 | 14.82 | 0.00 | 2.161 | 5.24 | 5.25 | 3.0 | 96.8 | 0.2 | -2.55 | 0.78 | 0.87 | 2.70 | 3.1 | 0.006 | 0.62 | 0.0 | 0.05 | 16.01 | 0.00 | 2.128 | 5.87 | 4.08 | 3.8 | 96.2 | 0.0 | -0.71 | 0.41 | 0.74 | 0.87 | 2.58 | 99242 | 13364 | 78 | 0 | 26 | 0 | 0 | logfile |
✔ | 6oSY | 20189 | 2024-04-14 | 2019-05-02 | 4.3 | 4.54 | 4.35 | 4.4 | 0.014 | 1.52 | 0.0 | 0.09 | 20.54 | 0.01 | 2.290 | 6.39 | 2.64 | 9.6 | 90.4 | 0.0 | -3.58 | 0.77 | 0.83 | — | 4.4 | 0.004 | 0.81 | 0.0 | 0.05 | 13.79 | 0.00 | 2.140 | 15.07 | 0.03 | 7.6 | 92.4 | 0.0 | -1.65 | 0.67 | 0.77 | 0.82 | — | 32463 | 3834 | 78 | 0 | 186 | 0 | 0 | logfile |
✔ | 7QCo | 13898 | 2024-04-13 | 2021-11-24 | 3.7 | 3.89 | 3.86 | 3.7 | 0.006 | 0.93 | 0.0 | 0.05 | 21.64 | 0.02 | 1.932 | 23.52 | 9.61 | 13.9 | 86.0 | 0.2 | -4.15 | 0.72 | 0.69 | 0.82 | 3.7 | 0.003 | 0.78 | 0.0 | 0.04 | 19.11 | 0.01 | 1.493 | 17.38 | 3.72 | 9.2 | 90.8 | 0.0 | -1.38 | 0.79 | 0.73 | 0.72 | 0.64 | 90396 | 8812 | 78 | 0 | 462 | 0 | 0 | logfile |
✔ | 6QX9 | 4665 | 2024-04-13 | 2019-03-07 | 3.28 | 3.33 | — | 3.3 | 0.011 | 1.31 | 35.0 | 0.08 | 17.76 | 0.01 | 0.530 | 12.89 | 2.29 | 5.5 | 94.1 | 0.3 | -3.26 | 0.46 | 0.51 | 1.65 | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 18.32 | 0.00 | 1.852 | 16.21 | 2.38 | 5.1 | 94.8 | 0.1 | -0.47 | 0.85 | 0.50 | 0.61 | 1.66 | 137494 | 15560 | 77 | 565 | 36 | 0 | 0 | logfile |
✔ | 7R4X | 14317 | 2024-04-11 | 2022-02-09 | 2.15 | 1.94 | — | 2.1 | 0.013 | 1.22 | 0.0 | 0.06 | 22.83 | 0.02 | 1.723 | 4.90 | 4.12 | 3.8 | 96.2 | 0.1 | -0.66 | 0.70 | 0.73 | 4.07 | 2.0 | 0.005 | 0.91 | 0.0 | 0.04 | 22.76 | 0.01 | 1.813 | 12.42 | 2.69 | 3.9 | 96.1 | 0.0 | 0.01 | 0.91 | 0.79 | 0.87 | 4.46 | 77936 | 4792 | 77 | 1646 | 174 | 4117 | 0 | logfile |
✔ | 7VRJ | 32100 | 2024-04-12 | 2021-10-23 | 2.81 | 2.48 | — | 2.7 | 0.019 | 1.88 | 0.0 | 0.06 | 23.42 | 0.02 | 2.064 | 9.41 | 1.43 | 2.9 | 97.1 | 0.0 | 1.42 | 0.68 | 0.84 | 3.65 | 2.7 | 0.006 | 1.00 | 1.0 | 0.05 | 18.77 | 0.01 | 1.895 | 7.84 | 3.55 | 3.5 | 96.5 | 0.0 | 1.07 | 0.88 | 0.69 | 0.87 | 3.27 | 26309 | 2604 | 77 | 0 | 114 | 48 | 0 | logfile |
✔ | 8oiQ | 16896 | 2024-04-07 | 2023-03-23 | 3.5 | 3.76 | 3.59 | 3.7 | 0.003 | 0.41 | 0.0 | 0.03 | 16.84 | 0.01 | 1.362 | 5.13 | 0.63 | 2.7 | 97.3 | 0.0 | 0.46 | 0.64 | 0.82 | 2.68 | 3.7 | 0.005 | 0.76 | 1.0 | 0.04 | 18.95 | 0.01 | 1.497 | 10.73 | 2.52 | 4.8 | 95.2 | 0.0 | -0.04 | 0.62 | 0.64 | 0.84 | 2.24 | 112981 | 9379 | 77 | 1718 | 238 | 0 | 0 | logfile |
✘ | 6YP7 | 10865 | 2024-04-10 | 2020-04-15 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71784 | 7002 | 77 | 0 | 325 | 0 | 0 | logfile |
✔ | 7E80 | 31006 | 2024-04-07 | 2021-02-28 | 3.67 | 4.02 | — | 3.9 | 0.003 | 0.50 | 4.0 | 0.04 | 10.46 | 0.00 | 2.066 | 8.31 | 1.97 | 4.4 | 95.6 | 0.0 | 0.97 | 0.74 | 0.84 | 1.76 | 3.9 | 0.003 | 0.63 | 2.0 | 0.04 | 13.44 | 0.00 | 1.991 | 11.31 | 2.81 | 4.2 | 95.8 | 0.0 | 0.95 | 0.42 | 0.74 | 0.84 | 1.66 | 114468 | 15296 | 77 | 0 | 75 | 0 | 0 | logfile |
✘ | 7AiH | 11796 | 2024-04-16 | 2020-09-27 | 3.6 | 3.68 | — | 3.6 | 0.009 | 1.07 | 56.0 | 0.06 | 20.18 | 0.01 | 1.615 | 24.41 | 1.35 | 14.0 | 85.4 | 0.6 | -5.04 | 0.65 | 0.80 | 2.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 143667 | 14496 | 77 | 1087 | 516 | 0 | 0 | logfile |
✘ | 6SGA | 10177 | 2024-04-13 | 2019-08-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137038 | 15423 | 77 | 463 | 790 | 0 | 0 | logfile |
✘ | 6LY5 | 30012 | 2024-04-12 | 2020-02-13 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81344 | 6510 | 76 | 0 | 723 | 153 | 0 | logfile |
✘ | 7DR2 | 30823 | 2024-04-13 | 2020-12-25 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 89952 | 8588 | 76 | 0 | 438 | 0 | 0 | logfile |