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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Q2S | 13782 | 2024-03-12 | 2021-10-26 | 3.7 | 3.23 | — | 3.3 | 0.010 | 1.40 | 0.0 | 0.08 | 12.76 | 0.01 | 1.217 | 18.46 | 0.00 | 8.6 | 90.7 | 0.7 | -4.24 | 0.45 | 0.63 | 1.80 | 3.2 | 0.006 | 1.07 | 7.0 | 0.05 | 18.47 | 0.01 | 1.953 | 20.74 | 6.50 | 7.2 | 92.8 | 0.0 | -2.77 | 1.87 | 0.52 | 0.69 | 2.16 | 62377 | 7497 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 7Q2Q | 13780 | 2024-03-12 | 2021-10-26 | 4.3 | 3.37 | — | 3.6 | 0.010 | 1.40 | 0.0 | 0.08 | 12.77 | 0.01 | 1.166 | 18.08 | 0.00 | 8.5 | 90.7 | 0.8 | -4.23 | 0.58 | 0.71 | — | 3.3 | 0.004 | 0.71 | 0.0 | 0.04 | 15.27 | 0.00 | 2.104 | 13.23 | 0.32 | 5.2 | 94.8 | 0.0 | -1.51 | 1.49 | 0.60 | 0.75 | — | 62377 | 7497 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 7o3W | 12710 | 2024-03-18 | 2021-04-03 | 4.9 | 6.81 | 5.80 | 7.1 | 0.017 | 1.84 | 0.0 | 0.11 | 18.08 | 0.01 | 0.360 | 24.19 | 0.30 | 3.5 | 96.4 | 0.2 | 1.74 | 0.66 | 0.54 | — | 7.1 | 0.004 | 0.91 | 0.0 | 0.04 | 15.60 | 0.00 | 2.000 | 25.15 | 0.03 | 1.7 | 98.2 | 0.1 | 1.85 | 2.38 | 0.75 | 0.81 | — | 138390 | 17976 | 98 | 0 | 14 | 0 | 0 | logfile |
✔ | 8EMM | 28254 | 2024-03-22 | 2022-09-28 | 2.1 | 1.96 | — | 2.0 | 0.010 | 1.02 | 0.0 | 0.05 | 22.77 | 0.02 | 1.741 | 4.46 | 1.11 | 3.4 | 96.5 | 0.1 | -1.25 | 0.84 | 0.86 | 5.02 | 2.0 | 0.005 | 0.73 | 0.0 | 0.04 | 22.78 | 0.01 | 1.780 | 5.99 | 2.21 | 3.5 | 96.5 | 0.1 | 0.42 | 0.90 | 0.84 | 0.90 | 4.76 | 145735 | 5593 | 97 | 4558 | 354 | 3491 | 0 | logfile |
✔ | 6J3Z | 9776 | 2024-03-16 | 2019-01-07 | 3.6 | 3.78 | — | 3.6 | 0.019 | 1.82 | 4.0 | 0.15 | 20.67 | 0.01 | 1.392 | 13.61 | 0.28 | 4.3 | 95.7 | 0.0 | -5.08 | 0.80 | 0.81 | 3.43 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 17.23 | 0.00 | 1.473 | 14.34 | 2.68 | 3.4 | 96.6 | 0.0 | -0.16 | 0.74 | 0.81 | 0.82 | 2.62 | 74619 | 6984 | 97 | 0 | 978 | 0 | 0 | logfile |
✔ | 5WE6 | 8815 | 2024-03-01 | 2017-07-07 | 3.4 | 3.36 | 3.38 | 3.3 | 0.008 | 1.11 | 2.0 | 0.10 | 23.94 | 0.02 | 1.679 | 1.92 | 2.48 | 10.3 | 87.3 | 2.4 | -4.31 | 0.77 | 0.80 | 2.33 | 3.3 | 0.004 | 0.71 | 1.0 | 0.03 | 23.39 | 0.01 | 1.860 | 10.29 | 4.30 | 8.2 | 91.3 | 0.5 | -1.65 | 1.90 | 0.83 | 0.84 | 1.75 | 153233 | 6322 | 97 | 4801 | 671 | 153 | 0 | logfile |
✔ | 8QFD | 18382 | 2024-03-15 | 2023-09-04 | 2.2 | 2.62 | 2.28 | 2.5 | 0.004 | 0.60 | 0.0 | 0.04 | 22.98 | 0.00 | 1.804 | 2.04 | 0.95 | 1.6 | 98.4 | 0.0 | 0.87 | 0.77 | 0.90 | 5.55 | 2.5 | 0.005 | 0.64 | 0.0 | 0.04 | 22.63 | 0.01 | 1.877 | 2.44 | 1.12 | 1.3 | 98.7 | 0.0 | 0.99 | 0.12 | 0.77 | 0.90 | 5.51 | 125372 | 6253 | 97 | 3393 | 166 | 2164 | 0 | logfile |
✔ | 3J9M | 2876 | 2024-03-03 | 2015-02-08 | 3.5 | 3.59 | 3.50 | 3.5 | 0.007 | 1.35 | 38.0 | 0.09 | 22.51 | 0.01 | 1.242 | 5.66 | 9.06 | 8.2 | 89.4 | 2.4 | -1.72 | 0.66 | 0.76 | 1.82 | 3.5 | 0.004 | 0.74 | 6.0 | 0.04 | 21.60 | 0.01 | 1.902 | 12.54 | 4.54 | 6.3 | 93.1 | 0.6 | 0.26 | 0.84 | 0.75 | 0.83 | 1.48 | 158384 | 12902 | 97 | 2454 | 309 | 0 | 0 | logfile |
✔ | 8G6W | 29786 | 2024-03-22 | 2023-02-16 | 2.02 | 2.04 | 2.01 | 2.0 | 0.006 | 0.81 | 0.0 | 0.04 | 23.38 | 0.02 | 1.223 | 9.47 | 6.74 | 4.1 | 95.8 | 0.1 | -2.71 | 0.75 | 0.81 | 4.45 | 2.0 | 0.006 | 0.91 | 0.0 | 0.05 | 23.12 | 0.01 | 1.704 | 8.34 | 3.04 | 4.4 | 95.5 | 0.1 | -0.46 | 0.49 | 0.78 | 0.87 | 4.78 | 145749 | 5585 | 97 | 4556 | 348 | 3659 | 0 | logfile |
✘ | 6NWA | 0524 | 2024-03-18 | 2019-02-06 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137509 | 12666 | 96 | 0 | 771 | 0 | 0 | logfile |
✔ | 6U2L | 20623 | 2024-03-02 | 2019-08-20 | 2.83 | 2.89 | 2.94 | 2.9 | 0.009 | 1.03 | 0.0 | 0.06 | 10.25 | 0.01 | 2.351 | 3.16 | 0.19 | 7.1 | 92.9 | 0.0 | -3.75 | 0.78 | 0.84 | 3.92 | 2.9 | 0.006 | 0.92 | 9.0 | 0.05 | 15.78 | 0.01 | 1.978 | 8.59 | 3.53 | 6.7 | 93.3 | 0.0 | -0.89 | 0.69 | 0.80 | 0.87 | 3.28 | 153756 | 19616 | 96 | 0 | 96 | 0 | 0 | logfile |
✘ | 7FiX | 31605 | 2024-03-16 | 2021-08-01 | 1.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 73929 | 7137 | 96 | 0 | 444 | 348 | 0 | logfile |
✘ | 8iWH | 35766 | 2024-03-17 | 2023-03-30 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75511 | 7531 | 95 | 0 | 407 | 0 | 0 | logfile |
✔ | 8J5K | 35987 | 2024-03-16 | 2023-04-23 | 2.93 | 3.61 | 3.02 | 3.4 | 0.012 | 1.99 | 0.0 | 0.15 | 20.97 | 0.01 | 2.201 | 13.03 | 2.91 | 7.7 | 91.5 | 0.8 | -0.72 | 0.79 | 0.83 | 2.71 | 3.4 | 0.003 | 0.87 | 0.0 | 0.06 | 17.62 | 0.00 | 1.969 | 8.37 | 1.62 | 5.0 | 94.9 | 0.1 | 0.40 | 0.50 | 0.78 | 0.85 | 2.90 | 71446 | 7302 | 94 | 0 | 716 | 0 | 0 | logfile |
✘ | 6KAD | 9956 | 2024-03-21 | 2019-06-21 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105342 | 9734 | 94 | 0 | 560 | 0 | 0 | logfile |
✘ | 7Uii | 26546 | 2024-03-16 | 2022-03-29 | 2.6 | 2.91 | 2.65 | 2.9 | 0.003 | 0.61 | 0.0 | 0.05 | 13.58 | 0.00 | 2.234 | 5.76 | 0.00 | 5.1 | 94.9 | 0.0 | -0.77 | 0.60 | 0.87 | 4.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 130944 | 16926 | 93 | 0 | 186 | 186 | 0 | logfile |
✘ | 7WG5 | 32477 | 2024-03-11 | 2021-12-28 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112687 | 11759 | 92 | 0 | 545 | 0 | 0 | logfile |
✔ | 7JJJ | 22354 | 2024-03-11 | 2020-07-26 | 4.5 | 4.63 | 4.47 | 4.5 | 0.020 | 1.79 | 0.0 | 0.13 | 10.01 | 0.01 | 2.377 | 0.90 | 0.07 | 2.0 | 98.0 | 0.0 | 0.68 | 0.79 | 0.80 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.05 | 11.60 | 0.00 | 2.175 | 10.75 | 0.00 | 4.4 | 95.6 | 0.0 | -0.16 | 1.43 | 0.79 | 0.83 | — | 54614 | 6674 | 92 | 0 | 182 | 0 | 0 | logfile |
✔ | 6ET5 | 3951 | 2024-03-22 | 2017-10-25 | 2.87 | 4.09 | 3.11 | 3.5 | 0.025 | 2.86 | 202.0 | 0.21 | 21.89 | 0.03 | 1.592 | 33.46 | 8.13 | 12.2 | 83.7 | 4.1 | -5.05 | 0.80 | 0.85 | 3.34 | 3.5 | 0.004 | 0.99 | 0.0 | 0.05 | 18.88 | 0.01 | 2.049 | 14.58 | 1.50 | 8.6 | 91.1 | 0.3 | -0.18 | 1.31 | 0.79 | 0.85 | 3.05 | 31994 | 3492 | 92 | 0 | 75 | 0 | 0 | logfile |
✘ | 7DCo | 30637 | 2024-03-16 | 2020-10-26 | 2.5 | 2.59 | — | 2.6 | 0.010 | 1.11 | 8.0 | 0.08 | 15.02 | 0.01 | 2.079 | 5.90 | 1.87 | 4.4 | 95.1 | 0.5 | -3.91 | 0.53 | 0.65 | 3.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 129875 | 15294 | 91 | 556 | 24 | 1714 | 0 | logfile |