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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8K39 | 36848 | 2024-03-14 | 2023-07-14 | 4.0 | 3.96 | 3.71 | 3.9 | 0.005 | 0.69 | 7.0 | 0.05 | 14.31 | 0.01 | 2.196 | 7.53 | 0.24 | 5.7 | 94.0 | 0.3 | -0.79 | 0.61 | 0.85 | — | 3.9 | 0.004 | 0.62 | 0.0 | 0.04 | 16.45 | 0.00 | 2.125 | 8.65 | 3.33 | 6.2 | 93.7 | 0.1 | -0.84 | 0.33 | 0.62 | 0.85 | — | 124618 | 15849 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CKB | 30384 | 2024-03-12 | 2020-07-16 | 3.24 | 3.29 | — | 3.2 | 0.008 | 0.88 | 0.0 | 0.05 | 16.33 | 0.01 | 2.160 | 6.96 | 1.05 | 4.0 | 96.0 | 0.0 | -0.87 | 0.85 | 0.88 | 2.17 | 3.2 | 0.004 | 0.69 | 0.0 | 0.04 | 17.02 | 0.00 | 1.537 | 7.62 | 3.80 | 2.1 | 97.9 | 0.0 | 0.01 | 0.24 | 0.84 | 0.89 | 2.72 | 114840 | 15840 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LiL | 23382 | 2024-03-16 | 2021-01-27 | 2.84 | 3.14 | — | 3.2 | 0.006 | 0.91 | 0.0 | 0.05 | 16.37 | 0.01 | 2.374 | 1.98 | 5.56 | 5.3 | 94.7 | 0.0 | -1.45 | 0.78 | 0.86 | 4.00 | 3.1 | 0.004 | 0.71 | 0.0 | 0.05 | 18.51 | 0.01 | 2.322 | 2.16 | 2.52 | 5.5 | 94.5 | 0.0 | -0.93 | 0.39 | 0.75 | 0.86 | 3.50 | 130140 | 15840 | 60 | 0 | 60 | 0 | 0 | logfile |
✔ | 7PHM | 13420 | 2024-03-14 | 2021-08-17 | 2.2 | 2.20 | — | 2.2 | 0.009 | 0.91 | 0.0 | 0.06 | 9.20 | 0.01 | 2.260 | 2.25 | 0.00 | 1.5 | 98.5 | 0.0 | -1.09 | 0.76 | 0.87 | 6.46 | 2.2 | 0.003 | 0.57 | 0.0 | 0.04 | 13.91 | 0.00 | 2.182 | 5.17 | 1.57 | 1.1 | 98.9 | 0.0 | 2.02 | 1.90 | 0.77 | 0.88 | 5.83 | 121560 | 15840 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MU1 | 24001 | 2024-03-16 | 2021-05-14 | 3.3 | 3.25 | — | 3.2 | 0.006 | 0.65 | 0.0 | 0.04 | 13.49 | 0.00 | 2.078 | 13.28 | 0.43 | 3.4 | 96.6 | 0.0 | 0.09 | 0.86 | 0.89 | 3.34 | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 15.08 | 0.00 | 2.331 | 7.06 | 0.34 | 4.3 | 95.7 | 0.0 | 0.97 | 0.29 | 0.86 | 0.91 | 3.17 | 130320 | 15840 | 60 | 0 | 60 | 0 | 0 | logfile |
✔ | 8DN9 | 27558 | 2024-03-14 | 2022-07-11 | 2.9 | 3.17 | 3.07 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 14.88 | 0.00 | 2.218 | 6.34 | 0.45 | 4.1 | 95.9 | 0.0 | -0.18 | 0.79 | 0.84 | 2.93 | 3.2 | 0.004 | 0.59 | 0.0 | 0.04 | 16.51 | 0.00 | 2.241 | 4.73 | 0.86 | 3.7 | 96.3 | 0.0 | 0.78 | 0.40 | 0.81 | 0.86 | 3.20 | 121080 | 15840 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LiS | 23384 | 2024-03-15 | 2021-01-27 | 2.96 | 3.25 | — | 3.2 | 0.008 | 0.79 | 0.0 | 0.06 | 14.94 | 0.00 | 2.214 | 2.81 | 3.45 | 3.5 | 96.5 | 0.0 | 0.22 | 0.75 | 0.88 | 4.54 | 3.2 | 0.004 | 0.57 | 0.0 | 0.04 | 16.63 | 0.00 | 2.151 | 2.69 | 2.56 | 3.4 | 96.6 | 0.0 | 0.62 | 0.33 | 0.78 | 0.90 | 3.37 | 128880 | 15660 | 60 | 0 | 60 | 0 | 0 | logfile |
✔ | 7VEA | 31944 | 2024-03-11 | 2021-09-08 | 3.7 | 3.55 | — | 3.5 | 0.009 | 1.13 | 0.0 | 0.04 | 13.27 | 0.00 | 2.098 | 6.48 | 0.58 | 1.5 | 98.4 | 0.0 | 2.51 | 0.65 | 0.78 | 1.44 | 3.6 | 0.004 | 0.75 | 0.0 | 0.04 | 16.07 | 0.00 | 2.058 | 14.65 | 3.66 | 2.1 | 97.9 | 0.0 | 2.40 | 1.40 | 0.69 | 0.77 | 1.12 | 111542 | 15594 | 165 | 0 | 84 | 0 | 0 | logfile |
✔ | 6QX9 | 4665 | 2024-03-19 | 2019-03-07 | 3.28 | 3.33 | — | 3.3 | 0.011 | 1.31 | 35.0 | 0.08 | 17.76 | 0.01 | 0.530 | 12.89 | 2.29 | 5.5 | 94.1 | 0.3 | -3.26 | 0.46 | 0.51 | 1.65 | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 18.32 | 0.00 | 1.852 | 16.21 | 2.38 | 5.1 | 94.8 | 0.1 | -0.47 | 0.85 | 0.50 | 0.61 | 1.66 | 137494 | 15560 | 77 | 565 | 36 | 0 | 0 | logfile |
✔ | 6X62 | 22068 | 2024-03-11 | 2020-05-27 | 3.5 | 3.69 | — | 3.7 | 0.014 | 1.87 | 45.0 | 0.09 | 15.63 | 0.01 | 2.185 | 6.98 | 4.90 | 8.5 | 91.5 | 0.0 | -3.87 | 0.65 | 0.64 | 0.52 | 3.6 | 0.004 | 0.85 | 0.0 | 0.05 | 16.49 | 0.00 | 2.004 | 20.31 | 5.40 | 7.1 | 92.9 | 0.0 | -1.67 | 1.28 | 0.74 | 0.83 | 1.45 | 109070 | 15548 | 117 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X66 | 22071 | 2024-03-11 | 2020-05-27 | 4.2 | 6.75 | — | 8.4 | 0.016 | 1.73 | 27.0 | 0.08 | 14.04 | 0.01 | 2.162 | 21.79 | 0.38 | 12.3 | 87.7 | 0.0 | -3.77 | 0.72 | 0.45 | — | 4.2 | 0.005 | 0.90 | 0.0 | 0.05 | 12.91 | 0.01 | 1.987 | 32.05 | 0.00 | 9.4 | 90.6 | 0.1 | -2.61 | 2.77 | 0.77 | 0.73 | — | 109070 | 15548 | 117 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LiM | 23383 | 2024-03-15 | 2021-01-27 | 2.75 | 2.92 | — | 2.9 | 0.007 | 1.05 | 60.0 | 0.06 | 15.61 | 0.01 | 2.436 | 3.47 | 3.49 | 3.5 | 96.5 | 0.0 | -2.97 | 0.74 | 0.84 | 3.83 | 3.0 | 0.005 | 0.88 | 0.0 | 0.05 | 18.08 | 0.01 | 2.257 | 3.71 | 2.43 | 3.9 | 96.1 | 0.0 | -2.51 | 0.29 | 0.76 | 0.86 | 3.13 | 127440 | 15480 | 60 | 0 | 60 | 0 | 0 | logfile |
✔ | 7Lii | 23379 | 2024-03-15 | 2021-01-27 | 3.55 | 3.83 | — | 3.7 | 0.007 | 0.90 | 0.0 | 0.06 | 13.90 | 0.00 | 2.299 | 5.65 | 0.87 | 9.9 | 90.1 | 0.0 | -2.72 | 0.82 | 0.84 | 2.16 | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 15.31 | 0.00 | 2.277 | 3.32 | 1.09 | 8.4 | 91.6 | 0.0 | -1.77 | 0.35 | 0.82 | 0.83 | 1.84 | 127320 | 15480 | 60 | 0 | 60 | 0 | 0 | logfile |
✔ | 7LiT | 23385 | 2024-03-15 | 2021-01-27 | 2.53 | 2.69 | — | 2.8 | 0.008 | 0.76 | 0.0 | 0.05 | 13.70 | 0.00 | 2.309 | 1.69 | 0.44 | 3.9 | 96.1 | 0.0 | 0.35 | 0.71 | 0.85 | 4.23 | 2.7 | 0.008 | 0.73 | 0.0 | 0.05 | 16.21 | 0.01 | 2.147 | 2.36 | 1.68 | 4.6 | 95.4 | 0.0 | 0.47 | 1.74 | 0.74 | 0.88 | 3.57 | 126840 | 15480 | 60 | 0 | 60 | 0 | 0 | logfile |
✘ | 6SGA | 10177 | 2024-03-18 | 2019-08-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137038 | 15423 | 77 | 463 | 790 | 0 | 0 | logfile |
✔ | 6WKV | 21810 | 2024-03-15 | 2020-04-17 | 2.99 | 2.74 | — | 2.9 | 0.012 | 0.66 | 0.0 | 0.06 | 16.80 | 0.00 | 2.116 | 10.99 | 3.10 | 6.7 | 93.3 | 0.0 | -4.68 | 0.81 | 0.85 | 3.88 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 18.47 | 0.00 | 2.151 | 4.66 | 1.81 | 2.2 | 97.8 | 0.0 | -0.17 | 0.51 | 0.81 | 0.87 | 2.93 | 126600 | 15420 | 108 | 0 | 60 | 0 | 0 | logfile |
✘ | 7AM2 | 11821 | 2024-03-19 | 2020-10-07 | 3.4 | 3.52 | — | 3.4 | 0.009 | 0.95 | 43.0 | 0.07 | 21.09 | 0.01 | 1.157 | 23.90 | 8.65 | 15.0 | 84.3 | 0.7 | -5.47 | 0.64 | 0.76 | 1.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139523 | 15384 | 80 | 839 | 42 | 0 | 0 | logfile |
✔ | 7E80 | 31006 | 2024-03-12 | 2021-02-28 | 3.67 | 4.02 | — | 3.9 | 0.003 | 0.50 | 4.0 | 0.04 | 10.46 | 0.00 | 2.066 | 8.31 | 1.97 | 4.4 | 95.6 | 0.0 | 0.97 | 0.74 | 0.84 | 1.76 | 3.9 | 0.003 | 0.63 | 2.0 | 0.04 | 13.44 | 0.00 | 1.991 | 11.31 | 2.81 | 4.2 | 95.8 | 0.0 | 0.95 | 0.42 | 0.74 | 0.84 | 1.66 | 114468 | 15296 | 77 | 0 | 75 | 0 | 0 | logfile |
✘ | 7DCo | 30637 | 2024-03-16 | 2020-10-26 | 2.5 | 2.59 | — | 2.6 | 0.010 | 1.11 | 8.0 | 0.08 | 15.02 | 0.01 | 2.079 | 5.90 | 1.87 | 4.4 | 95.1 | 0.5 | -3.91 | 0.53 | 0.65 | 3.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 129875 | 15294 | 91 | 556 | 24 | 1714 | 0 | logfile |
✘ | 5YZG | 6864 | 2024-03-21 | 2017-12-14 | 4.1 | 4.23 | 4.20 | 4.1 | 0.016 | 1.80 | 42.0 | 0.12 | 17.73 | 0.01 | 1.129 | 26.62 | 8.31 | 4.8 | 93.5 | 1.7 | -1.79 | 0.57 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103906 | 15211 | 63 | 408 | 19 | 0 | 0 | logfile |