Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7o0W	12681	2023-04-20	2021-03-27	2.47	2.42	—	2.3	0.018	4.34	0.0	0.06	24.63	0.01	2.010	1.98	0.28	1.4	98.6	0.0	1.25	0.82	0.86	5.37	2.3	0.003	1.68	0.0	0.03	21.17	0.00	1.957	7.86	0.98	0.9	99.1	0.0	3.96	1.12	0.83	0.88	3.91	56476	5076	236	0	320	406	0	logfile
✔	7Z4W	14509	2023-04-21	2022-03-05	2.7	2.53	—	2.5	0.006	0.89	2.0	0.06	14.33	0.01	2.223	2.01	0.16	3.7	96.2	0.1	-1.99	0.74	0.84	4.49	2.5	0.002	0.56	0.0	0.04	16.68	0.00	2.159	3.71	1.06	3.4	96.6	0.0	1.17	0.83	0.74	0.86	3.88	58942	7242	60	0	0	406	0	logfile
✘	6PUY	20484	2023-04-22	2019-07-18	2.8	3.15	2.88	3.1	0.015	0.90	0.0	0.06	19.66	0.01	0.000	4.36	0.19	3.0	97.0	0.0	-3.07	0.75	0.90	4.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11784	1232	28	72	10	404	0	logfile
✘	7F4V	31455	2023-04-24	2021-06-21	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67641	6336	78	0	453	402	0	logfile
✔	7o6Q	12740	2023-04-20	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.51	0.00	2.189	4.70	1.63	0.8	99.2	0.0	3.42	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7U5M	26355	2023-04-21	2022-03-02	2.28	2.36	2.38	2.4	0.008	0.96	0.0	0.07	12.19	0.00	2.296	4.95	1.87	3.6	96.4	0.0	-0.13	0.74	0.83	6.21	2.4	0.003	0.56	0.0	0.05	15.42	0.00	2.213	5.39	1.31	2.3	97.7	0.0	-0.23	0.33	0.75	0.84	5.46	10627	1328	12	0	4	399	0	logfile
✔	6NZK	0557	2023-04-29	2019-02-13	2.8	2.92	—	2.9	0.025	1.83	0.0	0.12	10.38	0.01	2.033	0.97	0.39	1.6	98.3	0.1	0.52	0.79	0.85	4.94	2.9	0.005	0.68	0.0	0.05	14.76	0.00	2.122	7.27	1.57	3.0	97.0	0.0	0.22	1.18	0.78	0.86	4.48	29268	3525	39	0	105	396	0	logfile
✘	7UK4	26574	2023-04-23	2022-03-31	1.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14487	1856	6	0	2	390	0	logfile
✔	7ZAi	14581	2023-04-22	2022-03-22	2.6	3.30	2.61	2.9	0.016	0.74	0.0	0.04	13.28	0.06	1.408	3.42	0.64	2.9	97.1	0.0	0.54	0.93	0.94	4.39	2.9	0.004	1.17	0.0	0.04	15.38	0.01	1.832	5.68	1.08	3.2	96.8	0.0	0.61	0.40	0.93	0.95	4.09	64649	3694	54	1596	68	379	0	logfile
✔	7ZAG	14579	2023-04-23	2022-03-22	2.77	3.44	2.77	3.0	0.017	0.71	1.0	0.04	13.06	0.06	1.409	4.02	0.74	3.3	96.7	0.0	0.45	0.93	0.91	4.29	3.0	0.005	1.12	0.0	0.04	15.37	0.01	1.821	6.69	0.65	3.7	96.3	0.0	0.58	0.95	0.93	0.94	3.70	65678	3824	57	1596	68	379	0	logfile
✔	7ZAH	14580	2023-04-26	2022-03-22	2.7	3.02	2.71	2.8	0.017	0.83	0.0	0.05	14.11	0.06	1.407	3.78	1.24	3.4	96.6	0.0	-0.04	0.88	0.92	4.04	2.8	0.004	1.22	0.0	0.04	15.91	0.01	1.626	5.99	1.18	2.9	97.1	0.0	0.26	0.40	0.88	0.93	3.72	69366	4289	58	1596	70	379	0	logfile
✘	7ZL1	14774	2023-04-28	2022-04-13	2.5	2.06	2.45	2.4	0.007	0.88	0.0	0.06	14.64	0.01	2.033	2.59	0.65	5.7	93.3	1.0	-0.02	0.73	0.86	6.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27257	1720	24	0	8	379	13574	logfile
✔	8E2E	27833	2023-04-27	2022-08-15	1.98	2.09	2.04	2.1	0.007	0.74	0.0	0.04	14.15	0.01	2.114	9.86	1.48	3.7	96.3	0.0	-0.81	0.69	0.86	6.40	2.1	0.004	0.60	0.0	0.04	14.44	0.00	2.034	8.11	1.48	1.4	98.6	0.0	2.35	0.31	0.69	0.86	6.30	26633	1654	4	0	0	377	13332	logfile
✔	7oi0	12916	2023-04-28	2021-05-11	2.76	2.96	2.85	2.8	0.014	1.08	0.0	0.06	17.05	0.01	1.912	23.66	0.23	10.2	89.8	0.0	-2.50	0.80	0.75	2.74	2.8	0.005	0.68	0.0	0.04	16.25	0.01	2.023	15.90	1.86	8.5	91.5	0.0	-0.83	0.38	0.83	0.79	2.20	29255	1037	17	963	0	374	0	logfile
✘	7oY8	13110	2023-04-26	2021-06-23	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22902	2293	103	0	68	372	0	logfile
✔	7QRU	14124	2023-04-23	2022-01-12	2.24	2.32	2.24	2.4	0.020	2.18	9.0	0.10	14.53	0.02	2.058	6.63	2.50	2.6	97.4	0.1	-1.62	0.79	0.91	4.88	2.4	0.004	0.60	0.0	0.04	15.74	0.00	2.169	5.83	1.43	0.9	99.1	0.0	2.24	1.15	0.79	0.90	4.06	16100	1957	18	0	3	360	0	logfile
✔	7P8N	13254	2023-04-25	2021-07-23	2.8	2.25	2.70	2.4	0.003	0.51	0.0	0.04	14.49	0.00	1.936	4.40	0.00	3.8	96.1	0.1	0.45	0.68	0.80	3.30	2.4	0.004	0.63	0.0	0.05	17.16	0.00	2.133	7.13	1.54	4.0	95.9	0.1	0.09	0.35	0.69	0.84	3.23	21429	2681	18	0	23	356	0	logfile
✔	7VFD	31949	2023-04-22	2021-09-13	2.25	2.33	2.21	2.3	0.004	0.53	0.0	0.05	12.47	0.00	2.204	3.62	0.60	3.7	96.3	0.0	-0.65	0.81	0.88	6.01	2.3	0.003	0.52	0.0	0.05	15.49	0.00	2.222	3.42	0.40	1.8	98.2	0.0	0.35	1.13	0.80	0.89	5.60	13262	1623	6	0	0	350	0	logfile
✘	7FiX	31605	2023-04-27	2021-08-01	1.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	73929	7137	96	0	444	348	0	logfile
✔	7P91	13257	2023-04-25	2021-07-23	2.8	2.26	2.71	2.4	0.003	0.52	0.0	0.04	14.73	0.00	2.062	5.47	0.13	3.6	96.4	0.0	0.31	0.68	0.80	3.48	2.4	0.004	0.60	0.0	0.04	17.51	0.01	2.046	7.51	1.80	4.0	96.0	0.0	0.08	0.40	0.69	0.84	3.37	21419	2681	18	0	23	346	0	logfile

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