Table showing results for May 2022

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VBZ	31886	2022-05-16	2021-09-01	2.4	2.48	—	2.5	0.009	0.92	6.0	0.06	16.44	0.01	1.907	11.45	2.07	3.7	96.0	0.3	-0.05	0.74	0.89	4.87	2.5	0.005	0.73	0.0	0.04	17.05	0.00	1.847	6.34	1.74	2.9	97.0	0.1	0.35	0.72	0.75	0.91	5.17	29292	3543	45	0	19	730	0	logfile
✔	7LXY	23579	2022-05-16	2021-03-05	2.2	2.32	2.27	2.3	0.011	1.21	0.0	0.07	11.01	0.01	2.182	1.67	0.09	1.8	98.2	0.0	0.45	0.75	0.81	4.97	2.3	0.004	0.65	0.0	0.05	14.30	0.00	2.026	5.37	1.39	1.8	98.2	0.0	0.93	0.52	0.77	0.84	4.56	33987	4446	36	0	69	729	0	logfile
✘	7VBN	31883	2022-05-16	2021-08-31	2.4	2.48	—	2.5	0.006	0.75	2.0	0.05	16.54	0.01	2.002	8.80	1.39	3.1	96.8	0.1	0.39	0.78	0.89	4.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29042	3522	44	0	17	713	0	logfile
✔	7VWJ	32154	2022-05-16	2021-11-10	2.6	2.67	—	2.7	0.007	0.71	0.0	0.04	14.14	0.01	1.965	7.67	0.13	2.9	97.0	0.0	0.65	0.77	0.89	4.69	2.6	0.003	0.54	0.0	0.04	16.43	0.00	2.133	6.85	1.54	3.3	96.7	0.0	0.36	0.32	0.77	0.91	4.27	28748	3488	44	0	17	711	0	logfile
✔	5WF0	8826	2022-05-24	2017-07-11	3.6	3.35	3.39	3.3	0.008	1.13	3.0	0.10	17.65	0.02	0.789	3.33	4.47	9.7	87.8	2.4	-4.19	0.75	0.77	2.17	3.3	0.006	0.84	2.0	0.04	17.02	0.01	1.784	14.05	0.14	8.8	90.6	0.6	-1.98	1.19	0.80	0.79	2.01	154600	6324	110	4802	1486	676	0	logfile
✘	6TRC	10558	2022-05-15	2019-12-18	2.98	3.06	—	3.1	0.010	1.16	0.0	0.07	19.32	0.02	1.220	9.53	1.42	7.9	92.1	0.0	-3.92	0.71	0.79	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75591	6849	99	0	402	651	0	logfile
✘	6KMX	0727	2022-05-13	2019-08-01	2.41	2.47	—	2.4	0.025	2.34	0.0	0.08	19.68	0.03	1.209	6.49	2.13	3.1	96.8	0.1	-4.21	0.75	0.87	4.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65112	5919	72	0	363	636	0	logfile
✘	6KMW	0726	2022-05-13	2019-08-01	2.35	2.41	—	2.4	0.026	2.51	0.0	0.08	20.93	0.03	1.212	6.39	3.70	4.3	95.6	0.1	-4.06	0.77	0.85	4.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64083	5739	63	0	366	627	0	logfile
✘	6KAC	9955	2022-05-15	2019-06-21	2.7	2.84	—	2.8	0.011	1.46	0.0	0.06	14.99	0.02	1.198	8.43	0.64	4.9	95.0	0.1	-4.64	0.72	0.84	4.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77947	7858	126	0	318	595	0	logfile
✔	7SS5	25404	2022-05-12	2021-11-09	2.7	3.48	2.63	3.2	0.003	0.63	2.0	0.05	19.80	0.00	2.179	8.80	0.00	3.1	96.9	0.0	0.76	0.51	0.75	3.88	3.2	0.003	0.63	0.0	0.04	21.64	0.00	2.102	8.15	1.95	3.3	96.7	0.0	1.75	3.21	0.51	0.88	3.26	6927	676	10	48	6	593	0	logfile
✔	7N06	24101	2022-05-14	2021-05-25	2.2	2.34	—	2.2	0.007	0.63	0.0	0.05	14.55	0.00	2.096	3.31	2.10	2.5	97.4	0.1	-1.80	0.83	0.88	7.00	2.2	0.003	0.55	0.0	0.05	16.62	0.00	2.075	4.07	0.92	1.6	98.4	0.0	0.41	1.11	0.84	0.89	6.20	17223	2082	21	18	0	555	0	logfile
✔	7M4X	23669	2022-05-17	2021-03-22	2.66	1.75	—	1.6	0.008	0.57	0.0	0.05	15.13	0.01	1.789	3.68	0.00	2.5	97.4	0.1	1.32	0.77	0.73	3.46	1.6	0.004	0.71	0.0	0.04	16.13	0.01	1.695	5.30	2.25	3.0	96.9	0.1	0.31	0.34	0.80	0.76	3.36	139446	5528	73	4453	194	552	0	logfile
✔	7oE0	12856	2022-05-18	2021-04-30	2.69	2.88	2.81	2.8	0.014	1.07	0.0	0.06	16.90	0.01	1.980	24.31	0.00	10.1	89.9	0.0	-2.59	0.77	0.72	2.51	2.8	0.007	0.75	0.0	0.04	16.86	0.01	1.996	17.71	2.36	9.2	90.8	0.0	-1.38	0.37	0.76	0.69	2.00	50296	2208	29	1510	0	530	0	logfile
✔	6XZ7	10655	2022-05-16	2020-02-03	2.1	2.05	2.12	2.1	0.010	0.81	1.0	0.05	14.53	0.03	1.564	6.42	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	2.1	0.003	0.72	0.0	0.04	14.76	0.01	1.285	6.22	2.29	2.1	97.8	0.1	0.28	0.92	0.70	0.86	5.26	94915	3351	45	3169	179	528	0	logfile
✔	7o0X	12682	2022-05-12	2021-03-28	2.44	2.39	—	2.3	0.017	4.32	0.0	0.05	21.28	0.01	2.099	1.97	0.23	1.4	98.6	0.0	1.33	0.82	0.86	5.55	2.3	0.005	1.81	0.0	0.04	20.95	0.00	2.064	7.06	1.05	1.1	98.9	0.0	3.69	0.48	0.82	0.87	4.38	56446	5072	237	0	316	521	0	logfile
✔	6V3A	21031	2022-05-18	2019-11-25	2.82	3.02	—	3.0	0.003	0.52	0.0	0.03	14.47	0.02	1.898	6.00	0.07	2.8	97.2	0.1	-1.23	0.82	0.82	2.96	3.0	0.007	0.74	0.0	0.04	16.09	0.01	1.637	7.26	2.48	4.8	95.1	0.1	-0.02	0.39	0.82	0.87	3.02	142113	5457	74	4615	95	520	0	logfile
✔	7NKJ	12441	2022-05-17	2021-02-18	2.17	2.16	—	2.1	0.005	0.59	0.0	0.05	16.78	0.00	1.958	2.92	1.05	1.8	98.2	0.1	1.04	0.80	0.89	6.04	2.1	0.004	0.55	0.0	0.04	16.76	0.00	1.766	2.97	1.05	1.6	98.3	0.1	1.18	0.12	0.80	0.90	5.92	45605	2945	20	0	11	516	22478	logfile
✔	7PCH	13320	2022-05-13	2021-08-03	2.89	3.82	2.93	3.4	0.012	1.54	0.0	0.10	13.62	0.01	2.343	0.97	0.55	3.7	96.3	0.0	1.22	0.89	0.83	3.70	3.4	0.003	0.63	0.0	0.04	14.48	0.00	2.180	6.57	0.64	0.6	99.4	0.0	2.27	1.58	0.90	0.88	3.64	10798	1254	16	0	4	510	0	logfile
✔	7o0U	12679	2022-05-12	2021-03-27	2.35	2.42	—	2.3	0.017	4.34	0.0	0.05	21.53	0.01	2.121	2.09	0.41	1.2	98.8	0.0	1.39	0.83	0.86	5.52	2.2	0.005	1.79	0.0	0.04	20.74	0.00	1.778	7.43	1.43	1.0	99.0	0.0	3.66	1.11	0.84	0.88	4.33	55758	4972	236	0	320	491	0	logfile
✔	7o0V	12680	2022-05-12	2021-03-27	2.5	2.50	—	2.4	0.017	4.36	0.0	0.05	21.56	0.01	2.117	2.11	0.31	1.2	98.8	0.0	1.63	0.82	0.86	5.41	2.4	0.006	1.83	0.0	0.04	21.22	0.01	2.031	7.83	1.31	0.9	99.1	0.0	3.43	0.49	0.83	0.88	4.33	55475	4947	238	0	317	489	0	logfile

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