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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7VBZ | 31886 | 2022-05-16 | 2021-09-01 | 2.4 | 2.48 | — | 2.5 | 0.009 | 0.92 | 6.0 | 0.06 | 16.44 | 0.01 | 1.907 | 11.45 | 2.07 | 3.7 | 96.0 | 0.3 | -0.05 | 0.74 | 0.89 | 4.87 | 2.5 | 0.005 | 0.73 | 0.0 | 0.04 | 17.05 | 0.00 | 1.847 | 6.34 | 1.74 | 2.9 | 97.0 | 0.1 | 0.35 | 0.72 | 0.75 | 0.91 | 5.17 | 29292 | 3543 | 45 | 0 | 19 | 730 | 0 | logfile |
✔ | 7LXY | 23579 | 2022-05-16 | 2021-03-05 | 2.2 | 2.32 | 2.27 | 2.3 | 0.011 | 1.21 | 0.0 | 0.07 | 11.01 | 0.01 | 2.182 | 1.67 | 0.09 | 1.8 | 98.2 | 0.0 | 0.45 | 0.75 | 0.81 | 4.97 | 2.3 | 0.004 | 0.65 | 0.0 | 0.05 | 14.30 | 0.00 | 2.026 | 5.37 | 1.39 | 1.8 | 98.2 | 0.0 | 0.93 | 0.52 | 0.77 | 0.84 | 4.56 | 33987 | 4446 | 36 | 0 | 69 | 729 | 0 | logfile |
✘ | 7VBN | 31883 | 2022-05-16 | 2021-08-31 | 2.4 | 2.48 | — | 2.5 | 0.006 | 0.75 | 2.0 | 0.05 | 16.54 | 0.01 | 2.002 | 8.80 | 1.39 | 3.1 | 96.8 | 0.1 | 0.39 | 0.78 | 0.89 | 4.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29042 | 3522 | 44 | 0 | 17 | 713 | 0 | logfile |
✔ | 7VWJ | 32154 | 2022-05-16 | 2021-11-10 | 2.6 | 2.67 | — | 2.7 | 0.007 | 0.71 | 0.0 | 0.04 | 14.14 | 0.01 | 1.965 | 7.67 | 0.13 | 2.9 | 97.0 | 0.0 | 0.65 | 0.77 | 0.89 | 4.69 | 2.6 | 0.003 | 0.54 | 0.0 | 0.04 | 16.43 | 0.00 | 2.133 | 6.85 | 1.54 | 3.3 | 96.7 | 0.0 | 0.36 | 0.32 | 0.77 | 0.91 | 4.27 | 28748 | 3488 | 44 | 0 | 17 | 711 | 0 | logfile |
✔ | 5WF0 | 8826 | 2022-05-24 | 2017-07-11 | 3.6 | 3.35 | 3.39 | 3.3 | 0.008 | 1.13 | 3.0 | 0.10 | 17.65 | 0.02 | 0.789 | 3.33 | 4.47 | 9.7 | 87.8 | 2.4 | -4.19 | 0.75 | 0.77 | 2.17 | 3.3 | 0.006 | 0.84 | 2.0 | 0.04 | 17.02 | 0.01 | 1.784 | 14.05 | 0.14 | 8.8 | 90.6 | 0.6 | -1.98 | 1.19 | 0.80 | 0.79 | 2.01 | 154600 | 6324 | 110 | 4802 | 1486 | 676 | 0 | logfile |
✘ | 6TRC | 10558 | 2022-05-15 | 2019-12-18 | 2.98 | 3.06 | — | 3.1 | 0.010 | 1.16 | 0.0 | 0.07 | 19.32 | 0.02 | 1.220 | 9.53 | 1.42 | 7.9 | 92.1 | 0.0 | -3.92 | 0.71 | 0.79 | 3.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75591 | 6849 | 99 | 0 | 402 | 651 | 0 | logfile |
✘ | 6KMX | 0727 | 2022-05-13 | 2019-08-01 | 2.41 | 2.47 | — | 2.4 | 0.025 | 2.34 | 0.0 | 0.08 | 19.68 | 0.03 | 1.209 | 6.49 | 2.13 | 3.1 | 96.8 | 0.1 | -4.21 | 0.75 | 0.87 | 4.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65112 | 5919 | 72 | 0 | 363 | 636 | 0 | logfile |
✘ | 6KMW | 0726 | 2022-05-13 | 2019-08-01 | 2.35 | 2.41 | — | 2.4 | 0.026 | 2.51 | 0.0 | 0.08 | 20.93 | 0.03 | 1.212 | 6.39 | 3.70 | 4.3 | 95.6 | 0.1 | -4.06 | 0.77 | 0.85 | 4.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64083 | 5739 | 63 | 0 | 366 | 627 | 0 | logfile |
✘ | 6KAC | 9955 | 2022-05-15 | 2019-06-21 | 2.7 | 2.84 | — | 2.8 | 0.011 | 1.46 | 0.0 | 0.06 | 14.99 | 0.02 | 1.198 | 8.43 | 0.64 | 4.9 | 95.0 | 0.1 | -4.64 | 0.72 | 0.84 | 4.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 77947 | 7858 | 126 | 0 | 318 | 595 | 0 | logfile |
✔ | 7SS5 | 25404 | 2022-05-12 | 2021-11-09 | 2.7 | 3.48 | 2.63 | 3.2 | 0.003 | 0.63 | 2.0 | 0.05 | 19.80 | 0.00 | 2.179 | 8.80 | 0.00 | 3.1 | 96.9 | 0.0 | 0.76 | 0.51 | 0.75 | 3.88 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 21.64 | 0.00 | 2.102 | 8.15 | 1.95 | 3.3 | 96.7 | 0.0 | 1.75 | 3.21 | 0.51 | 0.88 | 3.26 | 6927 | 676 | 10 | 48 | 6 | 593 | 0 | logfile |
✔ | 7N06 | 24101 | 2022-05-14 | 2021-05-25 | 2.2 | 2.34 | — | 2.2 | 0.007 | 0.63 | 0.0 | 0.05 | 14.55 | 0.00 | 2.096 | 3.31 | 2.10 | 2.5 | 97.4 | 0.1 | -1.80 | 0.83 | 0.88 | 7.00 | 2.2 | 0.003 | 0.55 | 0.0 | 0.05 | 16.62 | 0.00 | 2.075 | 4.07 | 0.92 | 1.6 | 98.4 | 0.0 | 0.41 | 1.11 | 0.84 | 0.89 | 6.20 | 17223 | 2082 | 21 | 18 | 0 | 555 | 0 | logfile |
✔ | 7M4X | 23669 | 2022-05-17 | 2021-03-22 | 2.66 | 1.75 | — | 1.6 | 0.008 | 0.57 | 0.0 | 0.05 | 15.13 | 0.01 | 1.789 | 3.68 | 0.00 | 2.5 | 97.4 | 0.1 | 1.32 | 0.77 | 0.73 | 3.46 | 1.6 | 0.004 | 0.71 | 0.0 | 0.04 | 16.13 | 0.01 | 1.695 | 5.30 | 2.25 | 3.0 | 96.9 | 0.1 | 0.31 | 0.34 | 0.80 | 0.76 | 3.36 | 139446 | 5528 | 73 | 4453 | 194 | 552 | 0 | logfile |
✔ | 7oE0 | 12856 | 2022-05-18 | 2021-04-30 | 2.69 | 2.88 | 2.81 | 2.8 | 0.014 | 1.07 | 0.0 | 0.06 | 16.90 | 0.01 | 1.980 | 24.31 | 0.00 | 10.1 | 89.9 | 0.0 | -2.59 | 0.77 | 0.72 | 2.51 | 2.8 | 0.007 | 0.75 | 0.0 | 0.04 | 16.86 | 0.01 | 1.996 | 17.71 | 2.36 | 9.2 | 90.8 | 0.0 | -1.38 | 0.37 | 0.76 | 0.69 | 2.00 | 50296 | 2208 | 29 | 1510 | 0 | 530 | 0 | logfile |
✔ | 6XZ7 | 10655 | 2022-05-16 | 2020-02-03 | 2.1 | 2.05 | 2.12 | 2.1 | 0.010 | 0.81 | 1.0 | 0.05 | 14.53 | 0.03 | 1.564 | 6.42 | 3.26 | 2.8 | 96.8 | 0.4 | -2.20 | 0.41 | 0.69 | 5.50 | 2.1 | 0.003 | 0.72 | 0.0 | 0.04 | 14.76 | 0.01 | 1.285 | 6.22 | 2.29 | 2.1 | 97.8 | 0.1 | 0.28 | 0.92 | 0.70 | 0.86 | 5.26 | 94915 | 3351 | 45 | 3169 | 179 | 528 | 0 | logfile |
✔ | 7o0X | 12682 | 2022-05-12 | 2021-03-28 | 2.44 | 2.39 | — | 2.3 | 0.017 | 4.32 | 0.0 | 0.05 | 21.28 | 0.01 | 2.099 | 1.97 | 0.23 | 1.4 | 98.6 | 0.0 | 1.33 | 0.82 | 0.86 | 5.55 | 2.3 | 0.005 | 1.81 | 0.0 | 0.04 | 20.95 | 0.00 | 2.064 | 7.06 | 1.05 | 1.1 | 98.9 | 0.0 | 3.69 | 0.48 | 0.82 | 0.87 | 4.38 | 56446 | 5072 | 237 | 0 | 316 | 521 | 0 | logfile |
✔ | 6V3A | 21031 | 2022-05-18 | 2019-11-25 | 2.82 | 3.02 | — | 3.0 | 0.003 | 0.52 | 0.0 | 0.03 | 14.47 | 0.02 | 1.898 | 6.00 | 0.07 | 2.8 | 97.2 | 0.1 | -1.23 | 0.82 | 0.82 | 2.96 | 3.0 | 0.007 | 0.74 | 0.0 | 0.04 | 16.09 | 0.01 | 1.637 | 7.26 | 2.48 | 4.8 | 95.1 | 0.1 | -0.02 | 0.39 | 0.82 | 0.87 | 3.02 | 142113 | 5457 | 74 | 4615 | 95 | 520 | 0 | logfile |
✔ | 7NKJ | 12441 | 2022-05-17 | 2021-02-18 | 2.17 | 2.16 | — | 2.1 | 0.005 | 0.59 | 0.0 | 0.05 | 16.78 | 0.00 | 1.958 | 2.92 | 1.05 | 1.8 | 98.2 | 0.1 | 1.04 | 0.80 | 0.89 | 6.04 | 2.1 | 0.004 | 0.55 | 0.0 | 0.04 | 16.76 | 0.00 | 1.766 | 2.97 | 1.05 | 1.6 | 98.3 | 0.1 | 1.18 | 0.12 | 0.80 | 0.90 | 5.92 | 45605 | 2945 | 20 | 0 | 11 | 516 | 22478 | logfile |
✔ | 7PCH | 13320 | 2022-05-13 | 2021-08-03 | 2.89 | 3.82 | 2.93 | 3.4 | 0.012 | 1.54 | 0.0 | 0.10 | 13.62 | 0.01 | 2.343 | 0.97 | 0.55 | 3.7 | 96.3 | 0.0 | 1.22 | 0.89 | 0.83 | 3.70 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 14.48 | 0.00 | 2.180 | 6.57 | 0.64 | 0.6 | 99.4 | 0.0 | 2.27 | 1.58 | 0.90 | 0.88 | 3.64 | 10798 | 1254 | 16 | 0 | 4 | 510 | 0 | logfile |
✔ | 7o0U | 12679 | 2022-05-12 | 2021-03-27 | 2.35 | 2.42 | — | 2.3 | 0.017 | 4.34 | 0.0 | 0.05 | 21.53 | 0.01 | 2.121 | 2.09 | 0.41 | 1.2 | 98.8 | 0.0 | 1.39 | 0.83 | 0.86 | 5.52 | 2.2 | 0.005 | 1.79 | 0.0 | 0.04 | 20.74 | 0.00 | 1.778 | 7.43 | 1.43 | 1.0 | 99.0 | 0.0 | 3.66 | 1.11 | 0.84 | 0.88 | 4.33 | 55758 | 4972 | 236 | 0 | 320 | 491 | 0 | logfile |
✔ | 7o0V | 12680 | 2022-05-12 | 2021-03-27 | 2.5 | 2.50 | — | 2.4 | 0.017 | 4.36 | 0.0 | 0.05 | 21.56 | 0.01 | 2.117 | 2.11 | 0.31 | 1.2 | 98.8 | 0.0 | 1.63 | 0.82 | 0.86 | 5.41 | 2.4 | 0.006 | 1.83 | 0.0 | 0.04 | 21.22 | 0.01 | 2.031 | 7.83 | 1.31 | 0.9 | 99.1 | 0.0 | 3.43 | 0.49 | 0.83 | 0.88 | 4.33 | 55475 | 4947 | 238 | 0 | 317 | 489 | 0 | logfile |