Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5K12	8194	2023-08-13	2016-05-17	1.8	2.40	—	2.8	0.008	0.97	0.0	0.06	10.27	0.01	2.051	19.79	0.82	3.8	96.2	0.0	-2.53	0.66	0.74	5.80	2.8	0.003	0.56	0.0	0.04	15.71	0.01	2.213	9.95	0.27	1.9	98.1	0.0	2.18	0.90	0.71	0.89	3.52	14856	1764	12	0	0	1086	0	logfile
✘	5XNL	6741	2023-08-24	2017-05-23	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98986	9364	136	0	490	1076	0	logfile
✔	7QSK	14132	2023-08-16	2022-01-13	2.84	2.93	2.90	2.8	0.008	0.91	0.0	0.84	15.15	0.00	1.435	3.34	0.15	3.1	96.9	0.1	0.26	0.77	0.87	4.81	2.9	0.007	1.30	0.0	0.25	16.30	0.00	1.969	5.83	0.87	2.1	97.8	0.0	1.67	0.50	0.78	0.90	3.97	69987	8291	116	0	59	1060	0	logfile
✔	7M4Y	23670	2023-08-23	2021-03-22	2.5	1.72	—	1.5	0.006	0.58	2.0	0.03	16.28	0.02	1.783	3.47	2.14	2.5	97.3	0.2	1.41	0.77	0.73	3.74	1.5	0.006	0.83	0.0	0.05	16.57	0.01	1.633	4.85	3.93	3.2	96.7	0.1	0.24	0.30	0.79	0.77	3.86	139817	5511	80	4453	200	1044	0	logfile
✔	7QSL	14133	2023-08-16	2022-01-13	2.76	2.80	2.81	2.7	0.010	0.96	0.0	0.84	14.23	0.00	1.561	3.91	0.06	3.1	96.8	0.0	-0.57	0.78	0.89	5.14	2.7	0.007	1.30	0.0	0.25	15.89	0.00	1.483	5.63	0.77	2.1	97.9	0.0	1.47	0.87	0.78	0.90	4.18	69734	8287	109	0	56	1024	0	logfile
✔	6AZ3	7025	2023-08-17	2017-09-09	2.5	3.08	—	3.1	0.012	1.29	0.0	0.06	16.54	0.03	1.349	4.53	0.96	6.4	93.4	0.2	-4.53	0.54	0.78	5.15	3.1	0.006	0.88	0.0	0.04	17.29	0.01	1.945	8.72	3.08	6.3	93.6	0.1	-1.41	0.34	0.54	0.80	3.89	126561	6390	91	3507	44	1019	0	logfile
✔	6ZGL	11210	2023-08-14	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.52	0.0	0.04	15.83	0.00	2.114	4.28	0.93	0.9	99.1	0.0	3.77	0.76	0.75	0.83	7.09	15760	1848	24	0	0	964	0	logfile
✔	6TSK	10564	2023-08-22	2019-12-20	2.3	2.36	—	2.3	0.012	1.54	24.0	0.11	16.57	0.02	1.535	1.57	2.42	2.9	97.0	0.1	-1.00	0.84	0.94	7.33	2.3	0.002	0.58	0.0	0.04	16.98	0.00	1.995	3.37	1.30	2.3	97.7	0.0	0.63	0.82	0.80	0.91	6.50	33632	4060	12	0	8	964	0	logfile
✔	7DD9	30650	2023-08-24	2020-10-28	2.4	2.49	2.37	2.4	0.007	0.71	0.0	0.05	15.88	0.00	1.932	8.69	1.93	7.1	92.9	0.0	-1.19	0.79	0.87	4.70	2.4	0.004	0.61	0.0	0.05	16.14	0.00	1.963	9.71	1.93	5.6	94.4	0.0	-0.89	0.23	0.79	0.88	4.80	37149	4516	12	0	12	949	0	logfile
✘	8CGi	16644	2023-08-15	2023-02-04	1.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17553	841	20	460	43	948	0	logfile
✔	6Z0V	11024	2023-08-25	2020-05-11	2.6	2.68	—	2.6	0.010	0.87	0.0	0.06	13.09	0.01	1.818	9.89	0.27	5.3	94.7	0.0	-2.69	0.73	0.87	5.10	2.6	0.003	0.60	0.0	0.04	14.77	0.00	2.022	7.70	0.76	2.3	97.7	0.0	0.27	1.24	0.74	0.86	4.34	42972	5424	36	0	12	936	0	logfile
✔	7oJ5	12938	2023-08-23	2021-05-13	2.4	2.43	—	2.4	0.002	0.53	0.0	0.04	16.61	0.00	2.177	1.81	1.95	1.6	98.4	0.0	-0.94	0.76	0.87	3.97	2.4	0.005	0.88	0.0	0.05	16.82	0.00	2.107	2.91	1.30	3.3	96.7	0.0	0.56	0.34	0.78	0.89	4.57	35323	4416	72	0	48	931	0	logfile
✘	8DBX	27316	2023-08-14	2022-06-14	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16968	1998	12	0	10	914	0	logfile
✔	7R44	14266	2023-08-15	2022-02-08	2.4	2.43	—	2.4	0.008	0.81	0.0	0.84	15.17	0.01	1.908	3.31	0.00	2.5	97.5	0.0	0.40	0.70	0.90	6.05	2.5	0.008	1.34	0.0	0.26	16.41	0.00	1.944	4.51	0.70	1.9	98.1	0.0	1.52	0.31	0.70	0.91	5.27	68213	8163	113	0	50	905	0	logfile
✔	7R43	14261	2023-08-16	2022-02-08	2.4	2.41	—	2.5	0.007	0.79	0.0	0.84	15.03	0.00	1.899	3.40	0.01	2.5	97.4	0.0	0.39	0.69	0.89	5.73	2.4	0.007	1.30	0.0	0.25	16.38	0.00	1.204	4.60	0.56	1.6	98.4	0.0	1.60	0.31	0.69	0.90	4.85	68334	8188	109	0	47	885	0	logfile
✔	6YBQ	10771	2023-08-22	2020-03-17	1.96	2.06	—	2.0	0.039	1.58	0.0	0.05	15.05	0.01	1.550	5.79	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	2.0	0.002	0.62	0.0	0.04	15.77	0.00	2.159	6.34	0.26	1.9	98.1	0.0	0.44	0.47	0.84	0.89	5.76	34092	4289	36	0	12	871	0	logfile
✔	8DQX	27663	2023-08-25	2022-07-20	2.1	2.94	2.16	2.7	0.008	0.68	0.0	0.04	17.17	0.00	1.878	4.91	1.26	2.0	98.0	0.0	1.11	0.79	0.75	4.56	2.7	0.004	0.56	0.0	0.04	16.99	0.00	1.678	4.23	1.13	1.5	98.5	0.0	1.80	0.67	0.81	0.89	4.48	43173	2598	26	27	8	866	21143	logfile
✔	7R46	14277	2023-08-14	2022-02-08	2.4	2.44	—	2.5	0.008	0.81	0.0	0.85	15.41	0.01	1.964	3.47	0.01	2.9	97.1	0.0	0.30	0.70	0.90	5.72	2.4	0.007	1.30	0.0	0.25	16.55	0.00	2.195	5.02	0.57	1.9	98.1	0.0	1.72	0.34	0.70	0.90	4.88	67614	8100	113	0	51	859	0	logfile
✘	8ENN	28274	2023-08-14	2022-09-30	2.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16749	1974	12	0	9	858	0	logfile
✔	7R4G	14307	2023-08-12	2022-02-08	2.5	2.48	—	2.5	0.008	0.81	0.0	0.86	15.26	0.01	1.869	4.23	0.03	3.2	96.8	0.0	-0.01	0.70	0.89	5.55	2.5	0.007	1.33	0.0	0.26	16.50	0.00	2.157	4.97	0.79	2.2	97.8	0.0	1.41	0.79	0.70	0.90	4.68	65153	7802	111	0	47	851	0	logfile

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