Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6RKD	4907	2022-12-18	2019-04-30	3.2	3.12	3.18	3.1	0.010	1.18	0.0	0.07	9.16	0.01	0.176	13.93	0.24	3.1	96.9	0.0	-3.60	0.69	0.82	4.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25290	3234	24	0	90	0	0	logfile
✘	5GJV	9513	2022-12-18	2016-07-02	3.6	3.69	—	3.7	0.013	1.60	32.0	0.08	14.75	0.01	1.695	18.06	4.57	11.6	86.4	2.0	-5.08	0.54	0.79	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21904	2661	14	0	43	0	0	logfile
✘	6JP8	9867	2022-12-18	2019-03-26	2.7	2.51	—	2.6	0.013	1.46	8.0	0.12	14.43	0.01	1.877	26.01	6.07	7.2	92.3	0.5	-4.05	0.38	0.52	1.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21801	2694	14	0	29	0	0	logfile
✘	6J4Z	0674	2022-12-22	2019-01-10	4.1	4.64	—	3.0	0.009	1.21	3.0	0.07	19.06	0.01	1.393	7.20	0.75	4.3	95.0	0.7	-1.66	0.75	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	47463	5061	34	351	10	0	0	logfile
✘	5ZJi	6932	2022-12-21	2018-03-20	3.3	3.39	—	3.4	0.012	1.48	0.0	0.11	16.64	0.01	1.204	8.01	0.45	6.4	93.6	0.0	-3.56	0.68	0.84	3.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44708	4087	40	0	271	0	0	logfile
✘	6C9Y	7438	2022-12-18	2018-01-29	4.25	4.33	—	9.7	0.008	1.53	5.0	0.08	13.66	0.01	2.064	6.66	5.32	7.8	90.7	1.5	-4.02	0.50	0.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28920	3685	7	0	3	0	0	logfile
✘	6G2H	4343	2022-12-19	2018-03-23	4.6	4.69	—	4.5	0.013	1.94	46.0	0.11	13.54	0.01	1.921	14.14	2.29	8.3	91.0	0.7	-3.04	0.79	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103896	6454	6	0	0	0	51852	logfile
✘	6UUZ	20903	2022-12-18	2019-11-01	3.0	3.14	—	3.1	0.007	1.03	0.0	0.06	13.18	0.01	1.219	8.06	1.45	5.6	94.2	0.2	-4.07	0.62	0.65	3.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31818	4084	10	0	4	2	0	logfile
✘	4CE4	2490	2022-12-19	2013-11-08	4.9	5.03	—	5.0	0.004	0.79	0.0	0.04	14.48	0.00	1.398	13.86	2.64	5.3	94.5	0.2	-2.30	0.47	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	40	1437	984	0	0	logfile
✘	6oo5	20146	2022-12-18	2019-04-22	4.2	4.30	4.10	4.2	0.012	1.05	0.0	0.06	9.23	0.01	2.246	3.36	0.00	4.5	95.5	0.0	-2.74	0.65	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17548	2440	8	0	4	0	0	logfile
✘	3JC7	6536	2022-12-20	2015-11-24	4.8	5.23	—	4.8	0.009	1.57	7.0	0.07	12.16	0.01	0.163	42.96	0.45	8.5	90.1	1.3	-4.10	0.75	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40298	5075	12	0	1	0	0	logfile
✘	6JSi	9882	2022-12-19	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62820	5844	9	0	4044	0	0	logfile
✘	6oRQ	20178	2022-12-18	2019-04-30	4.4	4.71	4.38	4.5	0.007	1.26	0.0	0.07	12.59	0.01	2.039	6.79	1.04	16.3	83.4	0.3	-4.97	0.65	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20176	2430	40	0	83	0	0	logfile
✘	5ooL	3842	2022-12-19	2017-08-08	3.06	5.10	3.10	4.9	0.009	1.05	2.0	0.06	14.15	0.01	0.037	6.41	0.54	5.0	94.9	0.1	-3.52	0.77	0.61	0.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98998	8198	66	1497	124	0	0	logfile
✘	5YKG	6833	2022-12-22	2017-10-14	4.57	4.68	4.39	4.4	0.005	0.71	4.0	0.04	13.41	0.01	2.245	13.43	7.90	4.2	95.6	0.1	-2.42	0.73	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	50868	6536	16	0	12	0	0	logfile
✘	6RKV	4912	2022-12-18	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	12.80	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15460	1784	8	64	0	0	0	logfile
✘	6KMW	0726	2022-12-19	2019-08-01	2.35	2.41	—	2.4	0.026	2.51	0.0	0.08	20.93	0.03	1.212	6.39	3.70	4.3	95.6	0.1	-4.06	0.77	0.85	4.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64083	5739	63	0	366	627	0	logfile
✘	5ZGB	6929	2022-12-19	2018-03-08	3.63	3.79	—	3.7	0.012	1.47	0.0	0.07	18.52	0.02	1.175	15.16	0.43	12.9	86.8	0.3	-5.22	0.73	0.74	2.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35011	3102	31	0	215	0	0	logfile
✘	6N7R	0361	2022-12-19	2018-11-28	3.2	3.34	—	3.3	0.017	1.37	6.0	0.08	15.58	0.01	1.205	6.64	4.50	4.8	94.8	0.4	-2.74	0.75	0.84	3.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35750	2908	19	568	91	0	0	logfile
✘	6NC3	0434	2022-12-20	2018-12-10	4.5	5.02	4.53	4.5	0.019	1.79	0.0	0.11	10.64	0.01	2.381	1.18	0.15	3.1	96.5	0.4	0.08	0.77	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38904	4686	72	0	162	0	0	logfile

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