Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6UoX	20834	2022-07-03	2019-10-15	4.02	4.28	—	4.1	0.010	1.17	1.0	0.08	11.80	0.01	2.461	0.89	0.00	8.2	91.8	0.0	-4.01	0.66	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9138	1161	1	0	14	0	0	logfile
✘	6DRC	7994	2022-07-07	2018-06-11	3.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	138860	8744	8	0	16	0	69384	logfile
✘	6DNF	7971	2022-07-04	2018-06-06	3.2	4.05	—	4.0	0.008	0.89	0.0	0.04	8.77	0.01	1.185	2.79	0.00	4.6	95.4	0.0	-1.20	0.59	0.77	2.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14119	900	8	0	11	0	6868	logfile
✘	6RWN	10043	2022-07-04	2019-06-05	3.1	3.33	3.15	3.3	0.004	0.58	0.0	0.05	16.14	0.01	1.225	2.82	3.66	3.1	96.9	0.0	-2.96	0.71	0.83	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18346	2076	26	86	16	8	0	logfile
✘	6S7o	10110	2022-07-04	2019-07-05	3.5	3.68	—	3.7	0.007	0.92	0.0	0.06	12.96	0.00	1.353	15.82	1.47	5.7	94.1	0.2	-1.66	0.72	0.85	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18118	2197	14	0	38	0	0	logfile
✘	6RWo	10044	2022-07-04	2019-06-05	3.05	3.20	3.05	3.2	0.006	0.67	0.0	0.05	17.06	0.01	1.210	2.40	4.10	3.3	96.7	0.0	-3.00	0.67	0.83	3.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18366	2076	26	86	16	6	0	logfile
✘	6U8Q	20689	2022-07-04	2019-09-05	4.67	4.92	—	4.6	0.004	0.77	0.0	0.05	18.46	0.01	1.180	7.41	4.07	3.8	96.1	0.2	-3.92	0.76	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21129	2442	18	96	6	0	0	logfile
✘	5U4i	8505	2022-07-09	2016-12-04	3.5	3.09	3.83	3.7	0.007	1.16	41.0	0.10	18.48	0.01	1.245	8.63	8.19	6.4	92.7	0.8	-1.32	0.60	0.74	0.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	149495	6159	61	4715	125	0	0	logfile
✘	6oRE	20173	2022-07-07	2019-04-30	2.9	3.38	—	3.0	0.008	0.74	2.0	0.04	13.98	0.01	1.173	4.62	0.34	3.4	96.5	0.1	-3.76	0.91	0.91	3.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	144774	5710	67	4642	438	0	0	logfile
✘	5LC5	4032	2022-07-08	2016-06-19	4.35	4.47	4.28	4.3	0.009	1.47	18.0	1.11	14.86	0.01	1.587	6.09	3.67	8.6	87.7	3.7	-4.81	0.69	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	51718	5916	52	0	1988	0	0	logfile
✘	6C4i	7341	2022-07-10	2018-01-12	3.24	3.32	3.41	3.4	0.006	1.17	44.0	0.10	16.78	0.01	1.227	5.29	9.75	4.2	95.4	0.4	-0.69	0.55	0.81	1.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	151446	6381	72	4717	319	2	0	logfile
✘	6C4H	7340	2022-07-04	2018-01-12	3.1	3.33	—	3.3	0.007	1.12	1.0	0.10	16.29	0.01	1.226	7.78	6.80	5.3	94.7	0.0	-2.61	0.43	0.85	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15326	184	8	648	34	0	0	logfile
✘	6AZ3	7025	2022-07-05	2017-09-09	2.5	3.08	—	3.1	0.009	1.08	0.0	0.06	16.20	0.01	1.205	4.56	0.96	6.4	93.4	0.2	-4.53	0.54	0.78	5.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126561	6390	91	3507	44	1019	0	logfile
✘	5X1G	6701	2022-07-02	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✘	6JLU	9839	2022-07-07	2019-03-06	3.02	3.12	—	3.2	0.014	1.72	11.0	0.08	15.86	0.01	1.177	12.95	0.10	8.6	90.9	0.5	-4.89	0.64	0.73	2.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	102777	9704	128	0	820	1	0	logfile
✘	5TAT	8384	2022-07-05	2016-09-10	4.8	5.01	5.79	4.8	0.004	0.87	0.0	0.05	9.77	0.01	1.373	4.83	0.35	9.4	90.5	0.1	-4.89	0.78	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121452	13500	12	0	3716	0	0	logfile
✘	6SW9	10320	2022-07-04	2019-09-20	4.2	5.88	4.46	3.0	0.011	1.21	0.0	0.06	17.80	0.01	1.152	31.84	0.80	19.0	80.8	0.2	-5.60	0.85	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70661	4508	47	1593	41	42	0	logfile
✘	5TAV	8386	2022-07-05	2016-09-10	4.8	4.96	5.58	4.7	0.004	0.89	4.0	0.05	9.80	0.01	1.373	4.82	0.39	9.7	90.1	0.2	-4.80	0.77	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121452	13500	12	0	3716	0	0	logfile
✘	6QW6	4658	2022-07-05	2019-03-05	2.92	3.02	—	3.0	0.010	1.21	14.0	0.07	15.88	0.01	0.644	10.69	1.79	5.1	94.5	0.4	-3.43	0.62	0.67	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	89236	10350	42	271	5	0	0	logfile
✘	6QX9	4665	2022-07-07	2019-03-07	3.28	3.33	—	3.3	0.011	1.31	35.0	0.08	16.06	0.01	0.530	13.00	2.29	5.5	94.1	0.3	-3.26	0.46	0.51	1.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	137494	15560	77	565	36	0	0	logfile

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