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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6RKD | 4907 | 2022-12-18 | 2019-04-30 | 3.2 | 3.12 | 3.18 | 3.1 | 0.010 | 1.18 | 0.0 | 0.07 | 9.16 | 0.01 | 0.176 | 13.93 | 0.24 | 3.1 | 96.9 | 0.0 | -3.60 | 0.69 | 0.82 | 4.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25290 | 3234 | 24 | 0 | 90 | 0 | 0 | logfile |
✘ | 5GJV | 9513 | 2022-12-18 | 2016-07-02 | 3.6 | 3.69 | — | 3.7 | 0.013 | 1.60 | 32.0 | 0.08 | 14.75 | 0.01 | 1.695 | 18.06 | 4.57 | 11.6 | 86.4 | 2.0 | -5.08 | 0.54 | 0.79 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21904 | 2661 | 14 | 0 | 43 | 0 | 0 | logfile |
✘ | 6JP8 | 9867 | 2022-12-18 | 2019-03-26 | 2.7 | 2.51 | — | 2.6 | 0.013 | 1.46 | 8.0 | 0.12 | 14.43 | 0.01 | 1.877 | 26.01 | 6.07 | 7.2 | 92.3 | 0.5 | -4.05 | 0.38 | 0.52 | 1.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21801 | 2694 | 14 | 0 | 29 | 0 | 0 | logfile |
✘ | 6J4Z | 0674 | 2022-12-22 | 2019-01-10 | 4.1 | 4.64 | — | 3.0 | 0.009 | 1.21 | 3.0 | 0.07 | 19.06 | 0.01 | 1.393 | 7.20 | 0.75 | 4.3 | 95.0 | 0.7 | -1.66 | 0.75 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47463 | 5061 | 34 | 351 | 10 | 0 | 0 | logfile |
✘ | 5ZJi | 6932 | 2022-12-21 | 2018-03-20 | 3.3 | 3.39 | — | 3.4 | 0.012 | 1.48 | 0.0 | 0.11 | 16.64 | 0.01 | 1.204 | 8.01 | 0.45 | 6.4 | 93.6 | 0.0 | -3.56 | 0.68 | 0.84 | 3.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44708 | 4087 | 40 | 0 | 271 | 0 | 0 | logfile |
✘ | 6C9Y | 7438 | 2022-12-18 | 2018-01-29 | 4.25 | 4.33 | — | 9.7 | 0.008 | 1.53 | 5.0 | 0.08 | 13.66 | 0.01 | 2.064 | 6.66 | 5.32 | 7.8 | 90.7 | 1.5 | -4.02 | 0.50 | 0.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28920 | 3685 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 6G2H | 4343 | 2022-12-19 | 2018-03-23 | 4.6 | 4.69 | — | 4.5 | 0.013 | 1.94 | 46.0 | 0.11 | 13.54 | 0.01 | 1.921 | 14.14 | 2.29 | 8.3 | 91.0 | 0.7 | -3.04 | 0.79 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103896 | 6454 | 6 | 0 | 0 | 0 | 51852 | logfile |
✘ | 6UUZ | 20903 | 2022-12-18 | 2019-11-01 | 3.0 | 3.14 | — | 3.1 | 0.007 | 1.03 | 0.0 | 0.06 | 13.18 | 0.01 | 1.219 | 8.06 | 1.45 | 5.6 | 94.2 | 0.2 | -4.07 | 0.62 | 0.65 | 3.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31818 | 4084 | 10 | 0 | 4 | 2 | 0 | logfile |
✘ | 4CE4 | 2490 | 2022-12-19 | 2013-11-08 | 4.9 | 5.03 | — | 5.0 | 0.004 | 0.79 | 0.0 | 0.04 | 14.48 | 0.00 | 1.398 | 13.86 | 2.64 | 5.3 | 94.5 | 0.2 | -2.30 | 0.47 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✘ | 6oo5 | 20146 | 2022-12-18 | 2019-04-22 | 4.2 | 4.30 | 4.10 | 4.2 | 0.012 | 1.05 | 0.0 | 0.06 | 9.23 | 0.01 | 2.246 | 3.36 | 0.00 | 4.5 | 95.5 | 0.0 | -2.74 | 0.65 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17548 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 3JC7 | 6536 | 2022-12-20 | 2015-11-24 | 4.8 | 5.23 | — | 4.8 | 0.009 | 1.57 | 7.0 | 0.07 | 12.16 | 0.01 | 0.163 | 42.96 | 0.45 | 8.5 | 90.1 | 1.3 | -4.10 | 0.75 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40298 | 5075 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 6JSi | 9882 | 2022-12-19 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✘ | 6oRQ | 20178 | 2022-12-18 | 2019-04-30 | 4.4 | 4.71 | 4.38 | 4.5 | 0.007 | 1.26 | 0.0 | 0.07 | 12.59 | 0.01 | 2.039 | 6.79 | 1.04 | 16.3 | 83.4 | 0.3 | -4.97 | 0.65 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20176 | 2430 | 40 | 0 | 83 | 0 | 0 | logfile |
✘ | 5ooL | 3842 | 2022-12-19 | 2017-08-08 | 3.06 | 5.10 | 3.10 | 4.9 | 0.009 | 1.05 | 2.0 | 0.06 | 14.15 | 0.01 | 0.037 | 6.41 | 0.54 | 5.0 | 94.9 | 0.1 | -3.52 | 0.77 | 0.61 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98998 | 8198 | 66 | 1497 | 124 | 0 | 0 | logfile |
✘ | 5YKG | 6833 | 2022-12-22 | 2017-10-14 | 4.57 | 4.68 | 4.39 | 4.4 | 0.005 | 0.71 | 4.0 | 0.04 | 13.41 | 0.01 | 2.245 | 13.43 | 7.90 | 4.2 | 95.6 | 0.1 | -2.42 | 0.73 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 50868 | 6536 | 16 | 0 | 12 | 0 | 0 | logfile |
✘ | 6RKV | 4912 | 2022-12-18 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 12.80 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✘ | 6KMW | 0726 | 2022-12-19 | 2019-08-01 | 2.35 | 2.41 | — | 2.4 | 0.026 | 2.51 | 0.0 | 0.08 | 20.93 | 0.03 | 1.212 | 6.39 | 3.70 | 4.3 | 95.6 | 0.1 | -4.06 | 0.77 | 0.85 | 4.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64083 | 5739 | 63 | 0 | 366 | 627 | 0 | logfile |
✘ | 5ZGB | 6929 | 2022-12-19 | 2018-03-08 | 3.63 | 3.79 | — | 3.7 | 0.012 | 1.47 | 0.0 | 0.07 | 18.52 | 0.02 | 1.175 | 15.16 | 0.43 | 12.9 | 86.8 | 0.3 | -5.22 | 0.73 | 0.74 | 2.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35011 | 3102 | 31 | 0 | 215 | 0 | 0 | logfile |
✘ | 6N7R | 0361 | 2022-12-19 | 2018-11-28 | 3.2 | 3.34 | — | 3.3 | 0.017 | 1.37 | 6.0 | 0.08 | 15.58 | 0.01 | 1.205 | 6.64 | 4.50 | 4.8 | 94.8 | 0.4 | -2.74 | 0.75 | 0.84 | 3.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35750 | 2908 | 19 | 568 | 91 | 0 | 0 | logfile |
✘ | 6NC3 | 0434 | 2022-12-20 | 2018-12-10 | 4.5 | 5.02 | 4.53 | 4.5 | 0.019 | 1.79 | 0.0 | 0.11 | 10.64 | 0.01 | 2.381 | 1.18 | 0.15 | 3.1 | 96.5 | 0.4 | 0.08 | 0.77 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38904 | 4686 | 72 | 0 | 162 | 0 | 0 | logfile |