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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8GRN | 34209 | 2023-11-15 | 2022-09-02 | 2.5 | 3.22 | 2.91 | 3.2 | 0.033 | 3.22 | 177.0 | 0.26 | 23.86 | 0.02 | 1.568 | 20.38 | 36.57 | 14.8 | 77.8 | 7.4 | -5.62 | 0.54 | 0.70 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11602 | 1432 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 7WT7 | 32770 | 2023-11-19 | 2022-02-04 | 3.4 | 3.87 | — | 3.8 | 0.005 | 0.92 | 15.0 | 0.06 | 13.84 | 0.01 | 2.132 | 9.81 | 0.91 | 7.1 | 92.6 | 0.3 | -1.79 | 0.78 | 0.77 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28322 | 3523 | 12 | 0 | 50 | 0 | 0 | logfile |
✘ | 8JB0 | 36139 | 2023-11-20 | 2023-05-07 | 4.2 | 4.12 | 4.27 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 16.01 | 0.00 | 2.196 | 13.62 | 0.09 | 2.8 | 97.0 | 0.2 | 2.31 | 0.76 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31387 | 3858 | 48 | 0 | 36 | 0 | 0 | logfile |
✘ | 8H87 | 34531 | 2023-11-14 | 2022-10-21 | 2.53 | 2.73 | 2.50 | 2.7 | 0.011 | 1.55 | 0.0 | 0.08 | 18.62 | 0.02 | 2.300 | 4.49 | 0.91 | 2.3 | 97.7 | 0.0 | -1.32 | 0.58 | 0.79 | 4.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7083 | 777 | 6 | 0 | 48 | 147 | 0 | logfile |
✘ | 8P39 | 17385 | 2023-11-14 | 2023-05-17 | 2.58 | 2.12 | 2.56 | 1.5 | 0.007 | 0.63 | 0.0 | 0.04 | 12.12 | 0.00 | 1.951 | 9.53 | 5.43 | 5.6 | 94.1 | 0.3 | -1.34 | 0.71 | 0.64 | 3.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9705 | 1200 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 8BKB | 16095 | 2023-11-21 | 2022-11-08 | 2.2 | 1.97 | 2.09 | 2.0 | 0.003 | 0.61 | 0.0 | 0.04 | 17.88 | 0.00 | 2.225 | 1.59 | 1.40 | 1.4 | 98.6 | 0.0 | 4.82 | 0.71 | 0.86 | 6.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35139 | 4128 | 54 | 0 | 6 | 1317 | 0 | logfile |
✘ | 8GA8 | 29892 | 2023-11-18 | 2023-02-22 | 3.5 | 3.70 | 3.49 | 3.7 | 0.003 | 0.54 | 0.0 | 0.04 | 17.43 | 0.00 | 2.028 | 11.33 | 0.33 | 2.6 | 97.4 | 0.0 | 0.98 | 0.70 | 0.69 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22011 | 2675 | 12 | 0 | 2 | 0 | 0 | logfile |
✘ | 7ASD | 11892 | 2023-11-20 | 2020-10-27 | 3.5 | 3.68 | 3.48 | 3.5 | 0.003 | 0.68 | 0.0 | 0.06 | 8.97 | 0.00 | 2.153 | 5.28 | 2.16 | 2.2 | 97.8 | 0.0 | 0.30 | 0.81 | 0.83 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30296 | 3664 | 48 | 0 | 72 | 0 | 0 | logfile |
✘ | 8i9V | 35285 | 2023-11-20 | 2023-02-07 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.63 | — | — | 2.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138001 | 11303 | 60 | 2408 | 4 | 0 | 0 | logfile |
✘ | 8A1W | 15091 | 2023-11-20 | 2022-06-02 | 2.56 | 2.20 | 2.53 | 2.4 | 0.004 | 0.56 | 0.0 | 0.04 | 15.09 | 0.00 | 2.014 | 2.96 | 0.32 | 1.1 | 98.9 | 0.0 | 1.65 | 0.60 | 0.72 | 3.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30172 | 1908 | 16 | 0 | 16 | 289 | 14776 | logfile |
✘ | 8GTQ | 34263 | 2023-11-20 | 2022-09-08 | 3.1 | 3.59 | 3.36 | 3.5 | 0.009 | 1.05 | 5.0 | 0.08 | 14.02 | 0.01 | 1.900 | 14.36 | 3.06 | 7.3 | 90.8 | 1.9 | -3.05 | 0.70 | 0.69 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30519 | 3759 | 33 | 0 | 75 | 0 | 0 | logfile |
✘ | 8i5Y | 35198 | 2023-11-15 | 2023-01-26 | 2.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13617 | 1565 | 9 | 0 | 39 | 6 | 0 | logfile |
✘ | 8FCM | 28983 | 2023-11-22 | 2022-12-01 | 3.27 | 3.63 | — | 3.7 | 0.011 | 0.85 | 0.0 | 0.06 | 12.28 | 0.00 | 2.381 | 1.16 | 0.00 | 1.8 | 98.1 | 0.2 | 0.39 | 0.69 | 0.67 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36829 | 4658 | 13 | 0 | 12 | 0 | 0 | logfile |
✘ | 8DFC | 27404 | 2023-11-17 | 2022-06-21 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20713 | 2548 | 18 | 0 | 15 | 483 | 0 | logfile |
✘ | 8S90 | 40233 | 2023-11-16 | 2023-03-27 | 4.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15323 | 2096 | 9 | 0 | 1 | 0 | 0 | logfile |
✘ | 8FCA | 28978 | 2023-11-22 | 2022-12-01 | 3.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35936 | 2400 | 8 | 0 | 8 | 0 | 17476 | logfile |
✘ | 6XXD | 10647 | 2023-11-16 | 2020-01-27 | 3.22 | 2.31 | — | 3.1 | 0.007 | 1.05 | 0.0 | 0.06 | 11.45 | 0.00 | 2.647 | 2.40 | 0.00 | 5.7 | 94.3 | 0.0 | -2.51 | 0.70 | 0.68 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14896 | 2000 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7T4K | 25678 | 2023-11-13 | 2021-12-10 | 3.25 | 3.56 | 3.27 | 3.4 | 0.005 | 0.88 | 0.0 | 0.05 | 12.76 | 0.01 | 2.287 | 3.74 | 0.15 | 2.3 | 97.7 | 0.0 | 0.51 | 0.73 | 0.84 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6180 | 782 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6E8G | 9005 | 2023-11-21 | 2018-07-29 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.52 | — | — | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97272 | 12276 | 72 | 0 | 0 | 0 | 0 | logfile |
✘ | 8AZU | 15772 | 2023-11-18 | 2022-09-06 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.07 | — | — | 4.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23856 | 3108 | 42 | 0 | 0 | 0 | 0 | logfile |