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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6i52 | 4410 | 2024-01-17 | 2018-11-12 | 4.7 | 4.78 | — | 8.9 | 0.002 | 0.57 | 0.0 | 0.04 | 16.56 | 0.00 | 2.303 | 10.11 | 5.70 | 11.6 | 87.5 | 0.9 | -4.07 | 0.73 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3856 | 432 | 4 | 20 | 0 | 0 | 0 | logfile |
✘ | 5BK4 | 9400 | 2024-01-19 | 2017-09-12 | 3.9 | 4.14 | — | 4.1 | 0.008 | 1.24 | 0.0 | 0.06 | 14.59 | 0.01 | 2.234 | 5.12 | 1.24 | 12.2 | 87.6 | 0.2 | -4.81 | 0.81 | 0.79 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62482 | 7636 | 22 | 120 | 8 | 0 | 0 | logfile |
✘ | 6PZT | 20537 | 2024-01-17 | 2019-08-01 | 3.46 | 3.91 | 3.76 | 3.8 | 0.007 | 0.75 | 0.0 | 0.05 | 11.59 | 0.00 | 2.120 | 16.50 | 0.43 | 12.3 | 87.7 | 0.0 | -3.13 | 0.59 | 0.76 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6062 | 932 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6TM5 | 10518 | 2024-01-19 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.83 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✘ | 6QA9 | 4482 | 2024-01-19 | 2018-12-19 | 4.1 | 4.29 | 4.14 | 4.1 | 0.007 | 1.21 | 0.0 | 1.03 | 11.60 | 0.01 | 2.226 | 7.67 | 0.44 | 12.0 | 88.0 | 0.1 | -3.97 | 0.75 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65403 | 8091 | 58 | 0 | 19 | 0 | 0 | logfile |
✘ | 6EoJ | 3908 | 2024-01-20 | 2017-10-09 | 3.55 | 3.58 | 3.51 | 3.6 | 0.007 | 1.33 | 7.0 | 0.09 | 16.65 | 0.00 | 2.526 | 9.73 | 4.80 | 10.1 | 88.2 | 1.7 | -3.75 | 0.59 | 0.78 | 2.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13688 | 1710 | 4 | 0 | 7 | 0 | 0 | logfile |
✘ | 6JGZ | 9824 | 2024-01-18 | 2019-02-16 | 4.6 | 4.96 | — | 4.6 | 0.007 | 1.13 | 0.0 | 0.06 | 11.54 | 0.01 | 2.171 | 11.98 | 0.73 | 11.3 | 88.3 | 0.4 | -4.06 | 0.78 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109824 | 14368 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 6Jii | 9834 | 2024-01-19 | 2019-02-21 | 4.2 | 4.38 | — | 4.1 | 0.008 | 1.12 | 0.0 | 0.06 | 11.51 | 0.01 | 2.208 | 7.63 | 0.57 | 11.2 | 88.4 | 0.4 | -4.07 | 0.78 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115028 | 15012 | 16 | 0 | 16 | 0 | 0 | logfile |
✘ | 6XH7 | 22184 | 2024-01-19 | 2020-06-18 | 3.9 | 4.03 | — | 3.8 | 0.010 | 1.02 | 0.0 | 0.06 | 14.39 | 0.01 | 2.030 | 7.59 | 0.12 | 11.4 | 88.5 | 0.1 | -4.65 | 0.80 | 0.75 | 1.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66008 | 3971 | 13 | 102 | 4 | 0 | 32688 | logfile |
✘ | 6TM2 | 10517 | 2024-01-18 | 2019-12-03 | 2.95 | 3.12 | — | 3.1 | 0.008 | 1.01 | 0.0 | 0.06 | 11.48 | 0.01 | 2.181 | 3.02 | 0.10 | 11.3 | 88.7 | 0.0 | -4.14 | 0.44 | 0.47 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55254 | 7230 | 60 | 0 | 54 | 138 | 0 | logfile |
✘ | 7YNB | 33957 | 2024-01-20 | 2022-07-30 | 3.46 | 3.65 | 3.47 | 3.6 | 0.005 | 0.72 | 0.0 | 0.05 | 17.97 | 0.01 | 2.127 | 7.12 | 1.26 | 11.0 | 88.8 | 0.2 | -4.52 | 0.83 | 0.87 | 2.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13847 | 1536 | 3 | 66 | 0 | 0 | 0 | logfile |
✘ | 6iJZ | 9682 | 2024-01-19 | 2018-10-12 | 3.68 | 3.76 | — | 3.7 | 0.008 | 1.11 | 0.0 | 0.06 | 10.64 | 0.01 | 2.000 | 4.54 | 0.69 | 10.9 | 88.8 | 0.3 | -5.03 | 0.57 | 0.80 | 2.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10964 | 1366 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JH6 | 9825 | 2024-01-17 | 2019-02-17 | 4.8 | 5.31 | — | 4.8 | 0.006 | 1.07 | 1.0 | 0.05 | 11.44 | 0.01 | 2.197 | 12.11 | 0.58 | 10.8 | 88.9 | 0.3 | -4.03 | 0.79 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108924 | 14244 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 7AoD | 11841 | 2024-01-18 | 2020-10-14 | 4.5 | 4.61 | — | 4.5 | 0.007 | 0.89 | 0.0 | 0.05 | 14.84 | 0.01 | 1.858 | 27.36 | 1.95 | 10.7 | 88.9 | 0.3 | -4.20 | 0.79 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 59256 | 7466 | 34 | 0 | 12 | 0 | 0 | logfile |
✘ | 7YUH | 34107 | 2024-01-19 | 2022-08-17 | 3.7 | 3.99 | 3.78 | 3.8 | 0.010 | 1.18 | 0.0 | 0.07 | 10.78 | 0.01 | 2.253 | 6.61 | 0.15 | 10.9 | 88.9 | 0.1 | -4.68 | 0.80 | 0.77 | 1.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12432 | 1596 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6XXE | 10648 | 2024-01-19 | 2020-01-27 | 3.49 | 2.31 | — | 3.3 | 0.007 | 1.09 | 0.0 | 0.06 | 11.82 | 0.00 | 2.471 | 6.11 | 2.27 | 11.0 | 89.0 | 0.0 | -4.99 | 0.62 | 0.57 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12816 | 1776 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Ji8 | 9833 | 2024-01-19 | 2019-02-20 | 3.6 | 3.80 | — | 3.7 | 0.010 | 1.26 | 8.0 | 0.06 | 11.98 | 0.01 | 2.196 | 8.60 | 1.03 | 10.5 | 89.0 | 0.5 | -4.77 | 0.73 | 0.77 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115060 | 15024 | 16 | 0 | 4 | 0 | 0 | logfile |
✘ | 7W02 | 32234 | 2024-01-19 | 2021-11-17 | 3.3 | 3.44 | — | 3.4 | 0.007 | 0.89 | 0.0 | 0.05 | 15.17 | 0.00 | 1.892 | 7.36 | 0.23 | 10.9 | 89.1 | 0.1 | -3.18 | 0.68 | 0.87 | 2.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12326 | 1566 | 1 | 0 | 6 | 0 | 0 | logfile |
✘ | 6KLS | 0716 | 2024-01-19 | 2019-07-30 | 3.3 | 3.40 | 3.21 | 3.4 | 0.014 | 1.22 | 2.0 | 0.05 | 18.65 | 0.03 | 1.992 | 14.52 | 0.69 | 10.7 | 89.2 | 0.1 | -3.67 | 0.66 | 0.77 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13011 | 1530 | 12 | 0 | 17 | 0 | 0 | logfile |
✘ | 7PiJ | 13438 | 2024-01-18 | 2021-08-20 | 3.78 | 4.14 | — | 4.1 | 0.015 | 1.17 | 0.0 | 0.05 | 13.54 | 0.01 | 1.166 | 13.45 | 0.11 | 10.6 | 89.3 | 0.1 | -3.26 | 0.50 | 0.53 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8194 | 1068 | 8 | 0 | 0 | 16 | 0 | logfile |