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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6H3i | 0133 | 2023-12-12 | 2018-07-18 | 3.5 | 3.59 | — | 3.5 | 0.009 | 0.92 | 0.0 | 0.05 | 10.08 | 0.01 | 2.012 | 39.59 | 0.40 | 21.4 | 78.4 | 0.2 | -5.64 | 0.78 | 0.86 | 4.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20599 | 2597 | 3 | 0 | 0 | 0 | 53 | logfile |
✘ | 6SW9 | 10320 | 2023-12-12 | 2019-09-20 | 4.2 | 5.88 | 4.46 | 3.0 | 0.016 | 1.26 | 0.0 | 0.06 | 23.22 | 0.04 | 1.769 | 31.76 | 0.80 | 19.0 | 80.8 | 0.2 | -5.60 | 0.85 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70661 | 4508 | 47 | 1593 | 41 | 42 | 0 | logfile |
✘ | 6JQ0 | 9872 | 2023-12-14 | 2019-03-28 | 3.54 | 4.12 | — | 4.0 | 0.007 | 1.21 | 0.0 | 0.06 | 16.30 | 0.01 | 2.235 | 4.90 | 0.63 | 13.0 | 86.5 | 0.5 | -5.59 | 0.69 | 0.85 | 1.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26917 | 3323 | 13 | 0 | 20 | 0 | 0 | logfile |
✘ | 7S60 | 24845 | 2023-12-12 | 2021-09-12 | 3.7 | 4.13 | — | 4.0 | 0.009 | 1.42 | 3.0 | 0.07 | 16.09 | 0.01 | 2.157 | 3.93 | 1.35 | 5.3 | 94.6 | 0.1 | -5.53 | 0.65 | 0.83 | 1.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21086 | 2679 | 5 | 0 | 4 | 0 | 0 | logfile |
✘ | 8SS6 | 40745 | 2023-12-15 | 2023-05-08 | 3.01 | 3.32 | 3.16 | 3.3 | 0.017 | 1.38 | 0.0 | 0.28 | 19.01 | 0.01 | 2.303 | 4.80 | 1.05 | 7.9 | 91.7 | 0.4 | -5.47 | 0.68 | 0.76 | 3.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31609 | 3794 | 12 | 0 | 46 | 0 | 0 | logfile |
✘ | 7P48 | 13191 | 2023-12-14 | 2021-07-09 | 2.9 | 2.80 | 2.94 | 2.8 | 0.020 | 1.48 | 19.0 | 0.07 | 23.42 | 0.01 | 1.822 | 12.33 | 0.92 | 13.5 | 86.2 | 0.4 | -5.47 | 0.77 | 0.78 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138826 | 5925 | 57 | 4329 | 7 | 0 | 0 | logfile |
✘ | 8FoB | 29344 | 2023-12-12 | 2022-12-30 | 2.71 | 2.96 | 2.77 | 3.0 | 0.024 | 1.57 | 0.0 | 0.54 | 21.84 | 0.01 | 2.073 | 8.34 | 0.39 | 8.3 | 91.7 | 0.0 | -5.44 | 0.60 | 0.72 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20390 | 2376 | 12 | 0 | 46 | 52 | 0 | logfile |
✘ | 6JiU | 9836 | 2023-12-08 | 2019-02-23 | 4.2 | 4.52 | — | 4.2 | 0.006 | 1.01 | 9.0 | 0.05 | 15.69 | 0.01 | 2.218 | 10.69 | 0.51 | 10.3 | 89.5 | 0.2 | -5.44 | 0.78 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112212 | 14684 | 20 | 0 | 24 | 0 | 0 | logfile |
✘ | 7AMY | 11827 | 2023-12-13 | 2020-10-09 | 3.75 | 3.87 | 3.71 | 3.8 | 0.010 | 0.89 | 0.0 | 0.05 | 14.93 | 0.00 | 2.177 | 20.18 | 0.66 | 13.8 | 85.9 | 0.3 | -5.40 | 0.82 | 0.86 | 1.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24849 | 3177 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7AHE | 11784 | 2023-12-09 | 2020-09-24 | 4.1 | 4.22 | 4.11 | 4.1 | 0.009 | 1.23 | 0.0 | 0.09 | 12.90 | 0.00 | 2.205 | 16.70 | 0.45 | 9.6 | 90.4 | 0.0 | -5.40 | 0.69 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10060 | 1308 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 6NYY | 0552 | 2023-12-11 | 2019-02-12 | 3.0 | 2.29 | 2.98 | 3.1 | 0.007 | 0.90 | 0.0 | 0.05 | 10.82 | 0.01 | 0.952 | 5.97 | 0.05 | 5.9 | 94.1 | 0.0 | -5.40 | 0.70 | 0.66 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19226 | 2894 | 16 | 0 | 13 | 0 | 0 | logfile |
✘ | 8GRM | 34207 | 2023-12-13 | 2022-09-02 | 3.05 | 3.23 | 3.06 | 3.1 | 0.009 | 0.93 | 0.0 | 0.06 | 23.20 | 0.01 | 2.289 | 4.52 | 0.29 | 4.4 | 95.6 | 0.0 | -5.38 | 0.81 | 0.81 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15415 | 1195 | 16 | 289 | 4 | 0 | 0 | logfile |
✘ | 8SS7 | 40746 | 2023-12-11 | 2023-05-08 | 2.76 | 2.92 | 2.87 | 3.0 | 0.022 | 1.64 | 0.0 | 0.36 | 22.55 | 0.01 | 2.252 | 6.95 | 1.45 | 5.7 | 93.8 | 0.5 | -5.34 | 0.68 | 0.77 | 4.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19437 | 2266 | 12 | 0 | 46 | 0 | 0 | logfile |
✘ | 6BZE | 7314 | 2023-12-10 | 2017-12-23 | 4.0 | 4.03 | — | 4.0 | 0.009 | 1.42 | 0.0 | 0.08 | 17.34 | 0.01 | 1.648 | 79.81 | 9.00 | 13.2 | 86.4 | 0.4 | -5.34 | 0.37 | 0.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7072 | 848 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PTJ | 20471 | 2023-12-16 | 2019-07-15 | 3.8 | 4.13 | — | 4.0 | 0.008 | 1.12 | 1.0 | 0.06 | 14.87 | 0.01 | 2.011 | 6.46 | 0.39 | 10.6 | 89.2 | 0.2 | -5.32 | 0.86 | 0.82 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34361 | 4280 | 14 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FoA | 29343 | 2023-12-12 | 2022-12-30 | 2.66 | 2.96 | 2.81 | 2.9 | 0.023 | 1.52 | 0.0 | 0.53 | 22.53 | 0.01 | 2.298 | 7.30 | 0.42 | 5.2 | 94.7 | 0.0 | -5.28 | 0.66 | 0.84 | 4.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21287 | 2448 | 8 | 0 | 53 | 0 | 0 | logfile |
✘ | 7K10 | 22619 | 2023-12-09 | 2020-09-06 | 3.3 | 3.44 | — | 3.4 | 0.006 | 0.98 | 0.0 | 0.05 | 15.43 | 0.01 | 2.300 | 4.19 | 0.37 | 10.6 | 89.3 | 0.1 | -5.28 | 0.72 | 0.77 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10037 | 1259 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GJW | 9515 | 2023-12-12 | 2016-07-02 | 3.9 | 4.02 | — | 4.0 | 0.012 | 1.51 | 20.0 | 0.08 | 11.80 | 0.01 | 1.844 | 12.82 | 1.50 | 12.8 | 85.5 | 1.7 | -5.28 | 0.55 | 0.80 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21561 | 2676 | 14 | 0 | 29 | 0 | 0 | logfile |
✘ | 7BGD | 12178 | 2023-12-16 | 2021-01-06 | 3.2 | 3.27 | — | 3.2 | 0.008 | 1.30 | 0.0 | 0.06 | 22.57 | 0.01 | 2.327 | 3.64 | 2.16 | 8.0 | 91.7 | 0.3 | -5.26 | 0.85 | 0.83 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35364 | 1410 | 14 | 1128 | 0 | 0 | 0 | logfile |
✘ | 5oJQ | 3566 | 2023-12-08 | 2017-07-22 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113346 | 14364 | 54 | 0 | 0 | 0 | 0 | logfile |