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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6X1A | 21994 | 2023-10-05 | 2020-05-18 | 2.5 | 1.99 | 2.50 | 2.6 | 0.006 | 0.93 | 0.0 | 0.07 | 15.41 | 0.00 | 2.140 | 14.37 | 3.79 | 3.9 | 96.1 | 0.0 | -3.15 | 0.51 | 0.71 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1262 | 5 | 0 | 1 | 23 | 0 | logfile |
✘ | 8H87 | 34531 | 2023-10-03 | 2022-10-21 | 2.53 | 2.73 | 2.50 | 2.7 | 0.011 | 1.55 | 0.0 | 0.08 | 18.62 | 0.02 | 2.300 | 4.49 | 0.91 | 2.3 | 97.7 | 0.0 | -1.32 | 0.58 | 0.79 | 4.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7083 | 777 | 6 | 0 | 48 | 147 | 0 | logfile |
✘ | 8EiR | 28162 | 2023-10-03 | 2022-09-15 | 2.49 | 3.15 | 2.50 | 3.0 | 0.005 | 0.81 | 0.0 | 0.05 | 16.40 | 0.01 | 1.960 | 4.05 | 2.61 | 2.2 | 97.4 | 0.3 | -1.27 | 0.86 | 0.84 | 4.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4870 | 632 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7UNL | 26626 | 2023-10-05 | 2022-04-11 | 2.45 | 3.35 | 2.50 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 14.66 | 0.00 | 2.143 | 2.41 | 1.94 | 1.1 | 98.9 | 0.0 | 2.30 | 0.72 | 0.83 | 3.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11724 | 734 | 6 | 0 | 8 | 120 | 5900 | logfile |
✘ | 8ED0 | 28026 | 2023-10-08 | 2022-09-02 | 2.72 | 2.93 | 2.52 | 2.9 | 0.007 | 0.75 | 1.0 | 0.05 | 14.42 | 0.01 | 2.201 | 6.70 | 0.18 | 3.9 | 95.5 | 0.6 | -2.14 | 0.75 | 0.91 | 5.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16074 | 2088 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YLA | 33904 | 2023-10-10 | 2022-07-25 | 2.52 | 2.04 | 2.52 | 1.6 | 0.006 | 0.71 | 0.0 | 0.04 | 14.58 | 0.01 | 1.980 | 8.85 | 0.75 | 4.3 | 95.5 | 0.3 | -0.94 | 0.81 | 0.81 | 3.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 125784 | 3775 | 36 | 2994 | 6 | 0 | 32052 | logfile |
✘ | 8iHR | 35453 | 2023-10-12 | 2023-02-23 | 2.5 | 2.65 | 2.53 | 2.7 | 0.004 | 0.67 | 0.0 | 0.05 | 15.87 | 0.00 | 2.138 | 4.14 | 0.70 | 2.8 | 97.2 | 0.0 | -0.52 | 0.74 | 0.89 | 4.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24224 | 3200 | 16 | 0 | 16 | 0 | 0 | logfile |
✘ | 7NVL | 12605 | 2023-10-07 | 2021-03-15 | 2.5 | 2.63 | 2.55 | 2.6 | 0.005 | 0.78 | 0.0 | 0.05 | 16.49 | 0.00 | 1.915 | 8.72 | 1.56 | 3.2 | 96.7 | 0.0 | -2.02 | 0.60 | 0.73 | 3.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66477 | 8626 | 50 | 0 | 48 | 27 | 0 | logfile |
✘ | 8AZS | 15770 | 2023-10-04 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 7LP9 | 23473 | 2023-10-10 | 2021-02-11 | 2.63 | 3.37 | 2.55 | 3.0 | 0.010 | 1.07 | 0.0 | 0.20 | 17.56 | 0.00 | 2.040 | 4.68 | 0.00 | 2.7 | 97.3 | 0.0 | 1.57 | 0.73 | 0.84 | 3.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20977 | 2536 | 8 | 0 | 46 | 0 | 0 | logfile |
✘ | 8CSR | 26968 | 2023-10-10 | 2022-05-13 | 2.54 | 2.48 | 2.56 | 2.6 | 0.004 | 0.65 | 0.0 | 0.38 | 14.52 | 0.01 | 1.910 | 2.68 | 0.00 | 1.7 | 98.3 | 0.0 | 1.19 | 0.72 | 0.78 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69868 | 6354 | 42 | 854 | 43 | 46 | 0 | logfile |
✘ | 8C06 | 16355 | 2023-10-12 | 2022-12-16 | 2.7 | 2.32 | 2.57 | 2.7 | 0.003 | 0.76 | 0.0 | 0.05 | 13.59 | 0.01 | 2.333 | 2.28 | 0.00 | 5.5 | 94.5 | 0.0 | -1.51 | 0.67 | 0.75 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25324 | 3298 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 7TJF | 25924 | 2023-10-10 | 2022-01-16 | 2.6 | 3.06 | 2.57 | 2.8 | 0.005 | 0.87 | 0.0 | 0.05 | 19.49 | 0.01 | 1.795 | 4.00 | 1.87 | 2.1 | 97.9 | 0.0 | -1.60 | 0.85 | 0.89 | 3.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21125 | 2327 | 19 | 82 | 6 | 297 | 0 | logfile |
✘ | 8EEY | 28065 | 2023-10-10 | 2022-09-07 | 2.53 | 2.25 | 2.57 | 2.5 | 0.006 | 0.88 | 0.0 | 0.05 | 15.16 | 0.01 | 1.937 | 0.37 | 0.14 | 1.8 | 98.1 | 0.0 | 0.01 | 0.60 | 0.80 | 4.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20886 | 2393 | 6 | 66 | 4 | 0 | 0 | logfile |
✘ | 7TU8 | 26129 | 2023-10-19 | 2022-02-02 | 2.6 | 2.05 | 2.59 | 2.0 | 0.011 | 0.81 | 0.0 | 0.05 | 13.32 | 0.00 | 1.874 | 2.75 | 0.00 | 2.8 | 97.0 | 0.2 | 0.45 | 0.81 | 0.80 | 4.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20232 | 2604 | 12 | 0 | 24 | 0 | 0 | logfile |
✘ | 8DR4 | 27670 | 2023-10-20 | 2022-07-20 | 2.45 | 3.17 | 2.59 | 3.0 | 0.008 | 0.56 | 0.0 | 0.04 | 18.35 | 0.00 | 1.929 | 2.78 | 0.91 | 1.9 | 98.1 | 0.0 | 1.85 | 0.84 | 0.85 | 3.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43471 | 2600 | 17 | 63 | 8 | 0 | 21549 | logfile |
✘ | 8B14 | 15802 | 2023-10-09 | 2022-09-09 | 2.6 | 2.13 | 2.61 | 2.0 | 0.007 | 0.68 | 0.0 | 0.05 | 16.80 | 0.01 | 2.163 | 5.79 | 0.79 | 2.8 | 97.2 | 0.0 | 0.27 | 0.80 | 0.81 | 5.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18810 | 1243 | 3 | 0 | 2 | 0 | 9112 | logfile |
✘ | 8F0A | 28754 | 2023-10-09 | 2022-11-02 | 2.6 | 3.77 | 2.61 | 3.4 | 0.031 | 1.77 | 0.0 | 0.13 | 9.86 | 0.01 | 2.388 | 0.56 | 0.00 | 0.8 | 99.2 | 0.0 | 0.72 | 0.68 | 0.66 | 4.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18060 | 1212 | 9 | 0 | 0 | 0 | 9189 | logfile |
✘ | 8CYD | 27075 | 2023-10-14 | 2022-05-23 | 2.6 | 3.24 | 2.62 | 3.0 | 0.002 | 0.51 | 0.0 | 0.04 | 12.52 | 0.01 | 1.930 | 6.47 | 0.32 | 4.9 | 94.7 | 0.4 | 0.04 | 0.77 | 0.79 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28454 | 3663 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8H0X | 34417 | 2023-10-12 | 2022-09-30 | 2.57 | 2.80 | 2.62 | 2.7 | 0.008 | 0.93 | 0.0 | 0.06 | 12.74 | 0.01 | 2.257 | 1.76 | 1.11 | 3.3 | 96.7 | 0.0 | -0.82 | 0.81 | 0.86 | 3.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25122 | 3117 | 6 | 0 | 48 | 0 | 0 | logfile |