Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7D73	30600	2023-05-15	2020-10-02	3.0	2.48	—	2.7	0.011	1.23	7.0	0.07	19.92	0.01	1.302	10.00	10.36	6.3	93.4	0.3	-3.01	0.55	0.71	2.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35292	4495	24	0	12	0	0	logfile
✘	7Z31	14470	2023-05-16	2022-03-01	2.76	2.15	—	2.1	0.006	0.70	0.0	0.05	15.67	0.01	1.998	13.10	6.49	7.1	92.9	0.1	-1.15	0.55	0.75	3.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40156	5040	25	0	29	1	0	logfile
✘	6UMM	20820	2023-05-10	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	11.97	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23658	3184	10	0	0	0	0	logfile
✘	5YLZ	6839	2023-05-11	2017-10-20	3.6	3.71	—	3.7	0.013	1.68	60.0	0.11	15.90	0.01	1.581	22.37	4.17	11.6	86.4	2.0	-4.62	0.55	0.59	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76247	9095	49	373	14	0	0	logfile
✘	7WF7	32461	2023-05-03	2021-12-26	3.4	3.19	—	3.2	0.004	0.83	0.0	0.05	13.56	0.00	2.288	2.88	0.00	4.4	95.6	0.0	-1.14	0.55	0.64	1.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8136	1034	6	0	1	0	0	logfile
✘	5Lii	4053	2023-05-02	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3098	433	1	0	0	0	0	logfile
✘	5GJW	9515	2023-05-09	2016-07-02	3.9	4.02	—	4.0	0.012	1.51	20.0	0.08	11.56	0.01	1.844	12.82	1.50	12.8	85.5	1.7	-5.28	0.55	0.80	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21561	2676	14	0	29	0	0	logfile
✘	6QG0	4543	2023-05-15	2019-01-10	4.15	4.29	4.10	4.3	0.009	1.40	20.0	0.08	18.07	0.00	0.775	5.30	5.91	10.0	87.6	2.4	-3.14	0.56	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36980	4742	16	0	0	0	0	logfile
✘	6WWZ	21950	2023-05-04	2020-05-09	3.34	3.53	—	3.5	0.014	1.77	0.0	0.09	13.13	0.00	2.318	2.07	0.10	4.4	95.6	0.0	-3.33	0.56	0.77	2.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9450	1211	6	0	0	0	0	logfile
✘	7JMH	22394	2023-05-07	2020-07-31	4.5	5.68	—	4.4	0.005	1.02	0.0	0.05	10.48	0.01	1.373	9.43	0.46	11.7	88.2	0.1	-4.60	0.56	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	7JMJ	22396	2023-05-07	2020-07-31	4.5	5.51	—	4.3	0.007	1.08	0.0	0.05	10.58	0.01	1.373	9.90	0.62	11.3	88.5	0.3	-4.67	0.56	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	6JP5	9866	2023-05-09	2019-03-25	2.9	3.03	—	3.1	0.016	1.54	4.0	0.13	14.11	0.01	1.921	28.83	6.11	7.7	91.7	0.6	-3.65	0.56	0.62	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22068	2694	14	0	39	0	0	logfile
✘	7K4B	22663	2023-05-09	2020-09-15	3.1	3.39	—	3.4	0.013	1.53	0.0	0.07	16.51	0.01	2.287	4.75	0.95	8.9	91.0	0.1	-6.09	0.56	0.82	3.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21118	2428	8	0	62	0	0	logfile
✘	7Z88	14546	2023-05-15	2022-03-16	3.33	3.00	3.54	3.1	0.005	0.92	0.0	0.05	16.25	0.01	2.160	21.19	0.19	11.3	88.6	0.1	-3.26	0.56	0.64	1.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38754	4750	6	52	1	0	0	logfile
✘	8HK1	34841	2023-05-12	2022-11-24	2.7	2.81	2.75	2.9	0.005	0.89	3.0	0.13	16.22	0.01	1.262	10.95	5.96	3.6	96.3	0.1	-2.81	0.56	0.61	2.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30236	4205	24	148	5	0	0	logfile
✘	5GAQ	8015	2023-05-08	2016-01-05	3.1	3.36	—	3.2	0.006	1.02	0.0	0.08	11.97	0.00	2.289	1.94	0.80	7.3	92.7	0.0	-3.69	0.56	0.50	3.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20574	2592	9	0	0	0	0	logfile
✘	6RRS	4989	2023-05-15	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93060	23220	180	0	0	0	0	logfile
✘	6CNA	7529	2023-05-09	2018-03-07	4.6	5.89	—	5.8	0.007	0.93	0.0	0.05	8.64	0.01	2.021	26.55	0.00	9.7	90.1	0.3	-4.80	0.57	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21426	3160	14	0	22	0	0	logfile
✘	6WPW	21866	2023-05-04	2020-04-28	3.1	3.57	—	3.5	0.007	0.95	0.0	0.06	10.18	0.01	1.735	6.24	0.00	5.9	94.1	0.0	-4.62	0.57	0.80	4.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9262	1176	6	0	0	0	0	logfile
✘	6L7o	0849	2023-05-14	2019-11-02	3.2	3.37	—	3.5	0.008	1.35	0.0	2.04	19.93	0.01	1.354	12.19	0.00	5.3	94.7	0.0	-2.60	0.57	0.70	0.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35037	4120	34	0	83	0	0	logfile

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