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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7D73 | 30600 | 2023-05-15 | 2020-10-02 | 3.0 | 2.48 | — | 2.7 | 0.011 | 1.23 | 7.0 | 0.07 | 19.92 | 0.01 | 1.302 | 10.00 | 10.36 | 6.3 | 93.4 | 0.3 | -3.01 | 0.55 | 0.71 | 2.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35292 | 4495 | 24 | 0 | 12 | 0 | 0 | logfile |
✘ | 7Z31 | 14470 | 2023-05-16 | 2022-03-01 | 2.76 | 2.15 | — | 2.1 | 0.006 | 0.70 | 0.0 | 0.05 | 15.67 | 0.01 | 1.998 | 13.10 | 6.49 | 7.1 | 92.9 | 0.1 | -1.15 | 0.55 | 0.75 | 3.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40156 | 5040 | 25 | 0 | 29 | 1 | 0 | logfile |
✘ | 6UMM | 20820 | 2023-05-10 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 11.97 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 5YLZ | 6839 | 2023-05-11 | 2017-10-20 | 3.6 | 3.71 | — | 3.7 | 0.013 | 1.68 | 60.0 | 0.11 | 15.90 | 0.01 | 1.581 | 22.37 | 4.17 | 11.6 | 86.4 | 2.0 | -4.62 | 0.55 | 0.59 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76247 | 9095 | 49 | 373 | 14 | 0 | 0 | logfile |
✘ | 7WF7 | 32461 | 2023-05-03 | 2021-12-26 | 3.4 | 3.19 | — | 3.2 | 0.004 | 0.83 | 0.0 | 0.05 | 13.56 | 0.00 | 2.288 | 2.88 | 0.00 | 4.4 | 95.6 | 0.0 | -1.14 | 0.55 | 0.64 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8136 | 1034 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 5Lii | 4053 | 2023-05-02 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GJW | 9515 | 2023-05-09 | 2016-07-02 | 3.9 | 4.02 | — | 4.0 | 0.012 | 1.51 | 20.0 | 0.08 | 11.56 | 0.01 | 1.844 | 12.82 | 1.50 | 12.8 | 85.5 | 1.7 | -5.28 | 0.55 | 0.80 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21561 | 2676 | 14 | 0 | 29 | 0 | 0 | logfile |
✘ | 6QG0 | 4543 | 2023-05-15 | 2019-01-10 | 4.15 | 4.29 | 4.10 | 4.3 | 0.009 | 1.40 | 20.0 | 0.08 | 18.07 | 0.00 | 0.775 | 5.30 | 5.91 | 10.0 | 87.6 | 2.4 | -3.14 | 0.56 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36980 | 4742 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6WWZ | 21950 | 2023-05-04 | 2020-05-09 | 3.34 | 3.53 | — | 3.5 | 0.014 | 1.77 | 0.0 | 0.09 | 13.13 | 0.00 | 2.318 | 2.07 | 0.10 | 4.4 | 95.6 | 0.0 | -3.33 | 0.56 | 0.77 | 2.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9450 | 1211 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7JMH | 22394 | 2023-05-07 | 2020-07-31 | 4.5 | 5.68 | — | 4.4 | 0.005 | 1.02 | 0.0 | 0.05 | 10.48 | 0.01 | 1.373 | 9.43 | 0.46 | 11.7 | 88.2 | 0.1 | -4.60 | 0.56 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 7JMJ | 22396 | 2023-05-07 | 2020-07-31 | 4.5 | 5.51 | — | 4.3 | 0.007 | 1.08 | 0.0 | 0.05 | 10.58 | 0.01 | 1.373 | 9.90 | 0.62 | 11.3 | 88.5 | 0.3 | -4.67 | 0.56 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 6JP5 | 9866 | 2023-05-09 | 2019-03-25 | 2.9 | 3.03 | — | 3.1 | 0.016 | 1.54 | 4.0 | 0.13 | 14.11 | 0.01 | 1.921 | 28.83 | 6.11 | 7.7 | 91.7 | 0.6 | -3.65 | 0.56 | 0.62 | 2.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22068 | 2694 | 14 | 0 | 39 | 0 | 0 | logfile |
✘ | 7K4B | 22663 | 2023-05-09 | 2020-09-15 | 3.1 | 3.39 | — | 3.4 | 0.013 | 1.53 | 0.0 | 0.07 | 16.51 | 0.01 | 2.287 | 4.75 | 0.95 | 8.9 | 91.0 | 0.1 | -6.09 | 0.56 | 0.82 | 3.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21118 | 2428 | 8 | 0 | 62 | 0 | 0 | logfile |
✘ | 7Z88 | 14546 | 2023-05-15 | 2022-03-16 | 3.33 | 3.00 | 3.54 | 3.1 | 0.005 | 0.92 | 0.0 | 0.05 | 16.25 | 0.01 | 2.160 | 21.19 | 0.19 | 11.3 | 88.6 | 0.1 | -3.26 | 0.56 | 0.64 | 1.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38754 | 4750 | 6 | 52 | 1 | 0 | 0 | logfile |
✘ | 8HK1 | 34841 | 2023-05-12 | 2022-11-24 | 2.7 | 2.81 | 2.75 | 2.9 | 0.005 | 0.89 | 3.0 | 0.13 | 16.22 | 0.01 | 1.262 | 10.95 | 5.96 | 3.6 | 96.3 | 0.1 | -2.81 | 0.56 | 0.61 | 2.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30236 | 4205 | 24 | 148 | 5 | 0 | 0 | logfile |
✘ | 5GAQ | 8015 | 2023-05-08 | 2016-01-05 | 3.1 | 3.36 | — | 3.2 | 0.006 | 1.02 | 0.0 | 0.08 | 11.97 | 0.00 | 2.289 | 1.94 | 0.80 | 7.3 | 92.7 | 0.0 | -3.69 | 0.56 | 0.50 | 3.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20574 | 2592 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RRS | 4989 | 2023-05-15 | 2019-05-20 | 3.9 | 4.30 | 4.41 | 3.8 | 0.013 | 2.10 | 0.0 | 0.00 | 2.04 | 0.01 | 2.364 | 0.79 | 0.00 | 3.9 | 95.3 | 0.8 | -0.85 | 0.56 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93060 | 23220 | 180 | 0 | 0 | 0 | 0 | logfile |
✘ | 6CNA | 7529 | 2023-05-09 | 2018-03-07 | 4.6 | 5.89 | — | 5.8 | 0.007 | 0.93 | 0.0 | 0.05 | 8.64 | 0.01 | 2.021 | 26.55 | 0.00 | 9.7 | 90.1 | 0.3 | -4.80 | 0.57 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21426 | 3160 | 14 | 0 | 22 | 0 | 0 | logfile |
✘ | 6WPW | 21866 | 2023-05-04 | 2020-04-28 | 3.1 | 3.57 | — | 3.5 | 0.007 | 0.95 | 0.0 | 0.06 | 10.18 | 0.01 | 1.735 | 6.24 | 0.00 | 5.9 | 94.1 | 0.0 | -4.62 | 0.57 | 0.80 | 4.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9262 | 1176 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6L7o | 0849 | 2023-05-14 | 2019-11-02 | 3.2 | 3.37 | — | 3.5 | 0.008 | 1.35 | 0.0 | 2.04 | 19.93 | 0.01 | 1.354 | 12.19 | 0.00 | 5.3 | 94.7 | 0.0 | -2.60 | 0.57 | 0.70 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35037 | 4120 | 34 | 0 | 83 | 0 | 0 | logfile |