Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7TF7	25864	2023-05-16	2022-01-06	2.13	2.24	—	2.2	0.004	0.61	0.0	0.04	15.42	0.00	2.187	5.57	1.43	2.5	97.4	0.1	1.01	0.47	0.70	5.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39976	4980	12	0	0	0	0	logfile
✘	7WPA	32680	2023-05-13	2022-01-23	2.77	2.26	—	2.1	0.004	0.78	2.0	0.05	14.25	0.01	2.327	3.39	0.45	5.4	94.5	0.0	-4.08	0.72	0.73	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30444	3774	20	0	47	0	0	logfile
✘	7oTo	13063	2023-05-04	2021-06-10	3.4	2.27	—	1.3	0.013	1.84	0.0	0.11	15.17	0.01	1.799	3.86	0.00	1.5	98.5	0.0	2.59	0.76	0.74	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10333	1313	4	0	4	0	0	logfile
✘	7SCJ	25036	2023-05-04	2021-09-28	3.4	2.31	2.97	2.0	0.004	0.60	0.0	0.05	11.12	0.01	2.200	9.22	0.00	5.7	94.3	0.0	-0.25	0.75	0.72	3.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9336	1131	6	2	7	0	0	logfile
✘	7ZCi	14632	2023-05-15	2022-03-28	2.69	2.32	—	1.8	0.007	0.83	0.0	1.48	15.78	0.01	2.217	4.86	1.77	2.6	97.4	0.0	-0.36	0.89	0.89	3.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36981	4650	24	0	28	0	0	logfile
✘	7WYB	32890	2023-05-04	2022-02-15	2.97	2.33	—	2.1	0.005	0.80	0.0	0.05	12.35	0.00	2.176	5.06	0.00	7.0	93.0	0.0	-1.33	0.66	0.61	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8757	1115	5	0	0	0	0	logfile
✘	7LD0	23278	2023-05-15	2021-01-12	3.1	2.33	3.20	1.9	0.006	0.65	0.0	0.04	13.28	0.01	2.229	9.07	0.00	6.1	93.9	0.0	-2.06	0.76	0.75	1.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36976	4720	8	0	0	0	0	logfile
✘	7CM7	30403	2023-05-16	2020-07-25	2.6	2.33	—	2.7	0.004	0.84	0.0	0.05	8.33	0.01	2.319	3.35	0.00	4.1	95.9	0.0	-4.15	0.66	0.73	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39216	4960	16	0	8	0	0	logfile
✘	8HGo	34744	2023-05-04	2022-11-15	3.31	2.35	3.32	2.2	0.004	0.71	0.0	0.05	7.94	0.01	2.284	4.45	0.00	8.0	91.8	0.2	-3.74	0.71	0.68	2.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9227	1178	6	0	8	0	0	logfile
✘	6QXM	4669	2023-05-15	2019-03-07	4.1	2.35	—	3.5	0.008	1.25	0.0	0.06	18.91	0.01	2.333	6.84	8.63	9.3	90.7	0.0	-4.78	0.68	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37164	4704	12	0	0	0	0	logfile
✘	7WK0	32554	2023-05-04	2022-01-08	3.32	2.37	—	2.2	0.004	0.65	0.0	0.04	11.04	0.01	2.233	9.59	7.71	12.2	87.5	0.2	-4.96	0.75	0.75	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9724	1264	8	0	2	0	0	logfile
✘	7RBU	24402	2023-05-03	2021-07-06	3.7	2.38	—	2.2	0.006	0.80	0.0	0.05	12.53	0.00	2.167	6.95	0.00	9.1	90.7	0.2	-2.50	0.74	0.77	4.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4107	510	6	0	7	0	0	logfile
✘	7Z18	14444	2023-05-15	2022-02-24	1.98	2.40	2.04	2.3	0.008	0.94	0.0	0.06	15.02	0.01	1.726	3.36	1.19	1.9	98.1	0.0	1.45	0.79	0.82	5.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37659	2432	18	0	10	2	18660	logfile
✘	7NYD	12651	2023-05-15	2021-03-22	3.27	2.40	3.23	1.6	0.013	1.84	5.0	0.10	13.73	0.02	1.536	2.06	0.66	4.8	95.2	0.0	-1.14	0.78	0.80	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38430	4940	17	0	24	0	0	logfile
✘	7Z15	14441	2023-05-17	2022-02-24	1.93	2.40	1.98	2.3	0.012	1.01	9.0	0.06	15.49	0.01	1.723	3.87	0.83	1.6	98.4	0.0	1.32	0.83	0.86	6.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46112	2888	32	0	16	1171	22357	logfile
✘	7VB7	31874	2023-05-12	2021-08-30	2.4	2.41	—	2.4	0.007	0.77	1.0	0.05	16.42	0.01	1.988	6.35	1.28	3.0	96.9	0.1	0.48	0.76	0.90	5.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29279	3543	45	0	19	736	0	logfile
✘	7VCF	31890	2023-05-16	2021-09-02	2.5	2.41	2.38	2.3	0.007	1.08	2.0	0.13	14.50	0.01	2.057	3.71	0.19	5.5	94.3	0.2	-1.21	0.79	0.81	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39626	4841	20	0	7	2	0	logfile
✘	7D74	30601	2023-05-15	2020-10-02	3.1	2.42	—	3.0	0.009	1.38	1.0	0.08	19.73	0.01	1.922	10.36	8.87	4.8	94.8	0.4	-2.46	0.51	0.65	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35353	4503	24	0	12	0	0	logfile
✘	6R94	4768	2023-05-09	2019-04-02	3.5	2.44	—	3.6	0.012	1.01	1.0	0.07	26.38	0.01	2.114	1.78	0.00	3.0	96.6	0.4	0.29	0.74	0.70	2.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22367	803	10	290	0	0	9995	logfile
✘	7D73	30600	2023-05-15	2020-10-02	3.0	2.48	—	2.7	0.011	1.23	7.0	0.07	19.92	0.01	1.302	10.00	10.36	6.3	93.4	0.3	-3.01	0.55	0.71	2.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35292	4495	24	0	12	0	0	logfile

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