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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7TF7 | 25864 | 2023-05-16 | 2022-01-06 | 2.13 | 2.24 | — | 2.2 | 0.004 | 0.61 | 0.0 | 0.04 | 15.42 | 0.00 | 2.187 | 5.57 | 1.43 | 2.5 | 97.4 | 0.1 | 1.01 | 0.47 | 0.70 | 5.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39976 | 4980 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WPA | 32680 | 2023-05-13 | 2022-01-23 | 2.77 | 2.26 | — | 2.1 | 0.004 | 0.78 | 2.0 | 0.05 | 14.25 | 0.01 | 2.327 | 3.39 | 0.45 | 5.4 | 94.5 | 0.0 | -4.08 | 0.72 | 0.73 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30444 | 3774 | 20 | 0 | 47 | 0 | 0 | logfile |
✘ | 7oTo | 13063 | 2023-05-04 | 2021-06-10 | 3.4 | 2.27 | — | 1.3 | 0.013 | 1.84 | 0.0 | 0.11 | 15.17 | 0.01 | 1.799 | 3.86 | 0.00 | 1.5 | 98.5 | 0.0 | 2.59 | 0.76 | 0.74 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10333 | 1313 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7SCJ | 25036 | 2023-05-04 | 2021-09-28 | 3.4 | 2.31 | 2.97 | 2.0 | 0.004 | 0.60 | 0.0 | 0.05 | 11.12 | 0.01 | 2.200 | 9.22 | 0.00 | 5.7 | 94.3 | 0.0 | -0.25 | 0.75 | 0.72 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9336 | 1131 | 6 | 2 | 7 | 0 | 0 | logfile |
✘ | 7ZCi | 14632 | 2023-05-15 | 2022-03-28 | 2.69 | 2.32 | — | 1.8 | 0.007 | 0.83 | 0.0 | 1.48 | 15.78 | 0.01 | 2.217 | 4.86 | 1.77 | 2.6 | 97.4 | 0.0 | -0.36 | 0.89 | 0.89 | 3.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36981 | 4650 | 24 | 0 | 28 | 0 | 0 | logfile |
✘ | 7WYB | 32890 | 2023-05-04 | 2022-02-15 | 2.97 | 2.33 | — | 2.1 | 0.005 | 0.80 | 0.0 | 0.05 | 12.35 | 0.00 | 2.176 | 5.06 | 0.00 | 7.0 | 93.0 | 0.0 | -1.33 | 0.66 | 0.61 | 1.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8757 | 1115 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7LD0 | 23278 | 2023-05-15 | 2021-01-12 | 3.1 | 2.33 | 3.20 | 1.9 | 0.006 | 0.65 | 0.0 | 0.04 | 13.28 | 0.01 | 2.229 | 9.07 | 0.00 | 6.1 | 93.9 | 0.0 | -2.06 | 0.76 | 0.75 | 1.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36976 | 4720 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7CM7 | 30403 | 2023-05-16 | 2020-07-25 | 2.6 | 2.33 | — | 2.7 | 0.004 | 0.84 | 0.0 | 0.05 | 8.33 | 0.01 | 2.319 | 3.35 | 0.00 | 4.1 | 95.9 | 0.0 | -4.15 | 0.66 | 0.73 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39216 | 4960 | 16 | 0 | 8 | 0 | 0 | logfile |
✘ | 8HGo | 34744 | 2023-05-04 | 2022-11-15 | 3.31 | 2.35 | 3.32 | 2.2 | 0.004 | 0.71 | 0.0 | 0.05 | 7.94 | 0.01 | 2.284 | 4.45 | 0.00 | 8.0 | 91.8 | 0.2 | -3.74 | 0.71 | 0.68 | 2.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9227 | 1178 | 6 | 0 | 8 | 0 | 0 | logfile |
✘ | 6QXM | 4669 | 2023-05-15 | 2019-03-07 | 4.1 | 2.35 | — | 3.5 | 0.008 | 1.25 | 0.0 | 0.06 | 18.91 | 0.01 | 2.333 | 6.84 | 8.63 | 9.3 | 90.7 | 0.0 | -4.78 | 0.68 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37164 | 4704 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WK0 | 32554 | 2023-05-04 | 2022-01-08 | 3.32 | 2.37 | — | 2.2 | 0.004 | 0.65 | 0.0 | 0.04 | 11.04 | 0.01 | 2.233 | 9.59 | 7.71 | 12.2 | 87.5 | 0.2 | -4.96 | 0.75 | 0.75 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9724 | 1264 | 8 | 0 | 2 | 0 | 0 | logfile |
✘ | 7RBU | 24402 | 2023-05-03 | 2021-07-06 | 3.7 | 2.38 | — | 2.2 | 0.006 | 0.80 | 0.0 | 0.05 | 12.53 | 0.00 | 2.167 | 6.95 | 0.00 | 9.1 | 90.7 | 0.2 | -2.50 | 0.74 | 0.77 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4107 | 510 | 6 | 0 | 7 | 0 | 0 | logfile |
✘ | 7Z18 | 14444 | 2023-05-15 | 2022-02-24 | 1.98 | 2.40 | 2.04 | 2.3 | 0.008 | 0.94 | 0.0 | 0.06 | 15.02 | 0.01 | 1.726 | 3.36 | 1.19 | 1.9 | 98.1 | 0.0 | 1.45 | 0.79 | 0.82 | 5.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37659 | 2432 | 18 | 0 | 10 | 2 | 18660 | logfile |
✘ | 7NYD | 12651 | 2023-05-15 | 2021-03-22 | 3.27 | 2.40 | 3.23 | 1.6 | 0.013 | 1.84 | 5.0 | 0.10 | 13.73 | 0.02 | 1.536 | 2.06 | 0.66 | 4.8 | 95.2 | 0.0 | -1.14 | 0.78 | 0.80 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38430 | 4940 | 17 | 0 | 24 | 0 | 0 | logfile |
✘ | 7Z15 | 14441 | 2023-05-17 | 2022-02-24 | 1.93 | 2.40 | 1.98 | 2.3 | 0.012 | 1.01 | 9.0 | 0.06 | 15.49 | 0.01 | 1.723 | 3.87 | 0.83 | 1.6 | 98.4 | 0.0 | 1.32 | 0.83 | 0.86 | 6.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46112 | 2888 | 32 | 0 | 16 | 1171 | 22357 | logfile |
✘ | 7VB7 | 31874 | 2023-05-12 | 2021-08-30 | 2.4 | 2.41 | — | 2.4 | 0.007 | 0.77 | 1.0 | 0.05 | 16.42 | 0.01 | 1.988 | 6.35 | 1.28 | 3.0 | 96.9 | 0.1 | 0.48 | 0.76 | 0.90 | 5.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29279 | 3543 | 45 | 0 | 19 | 736 | 0 | logfile |
✘ | 7VCF | 31890 | 2023-05-16 | 2021-09-02 | 2.5 | 2.41 | 2.38 | 2.3 | 0.007 | 1.08 | 2.0 | 0.13 | 14.50 | 0.01 | 2.057 | 3.71 | 0.19 | 5.5 | 94.3 | 0.2 | -1.21 | 0.79 | 0.81 | 3.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39626 | 4841 | 20 | 0 | 7 | 2 | 0 | logfile |
✘ | 7D74 | 30601 | 2023-05-15 | 2020-10-02 | 3.1 | 2.42 | — | 3.0 | 0.009 | 1.38 | 1.0 | 0.08 | 19.73 | 0.01 | 1.922 | 10.36 | 8.87 | 4.8 | 94.8 | 0.4 | -2.46 | 0.51 | 0.65 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35353 | 4503 | 24 | 0 | 12 | 0 | 0 | logfile |
✘ | 6R94 | 4768 | 2023-05-09 | 2019-04-02 | 3.5 | 2.44 | — | 3.6 | 0.012 | 1.01 | 1.0 | 0.07 | 26.38 | 0.01 | 2.114 | 1.78 | 0.00 | 3.0 | 96.6 | 0.4 | 0.29 | 0.74 | 0.70 | 2.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22367 | 803 | 10 | 290 | 0 | 0 | 9995 | logfile |
✘ | 7D73 | 30600 | 2023-05-15 | 2020-10-02 | 3.0 | 2.48 | — | 2.7 | 0.011 | 1.23 | 7.0 | 0.07 | 19.92 | 0.01 | 1.302 | 10.00 | 10.36 | 6.3 | 93.4 | 0.3 | -3.01 | 0.55 | 0.71 | 2.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35292 | 4495 | 24 | 0 | 12 | 0 | 0 | logfile |