Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5W68	8778	2023-05-16	2017-06-16	3.3	3.84	—	4.0	0.006	0.89	0.0	0.06	10.33	0.01	2.206	8.50	0.69	8.5	91.5	0.0	-5.31	0.73	0.78	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39390	5250	15	0	0	0	0	logfile
✘	5XTC	6772	2023-05-15	2017-06-19	3.7	3.85	—	3.7	0.014	1.55	1.0	0.07	12.55	0.01	1.049	26.41	1.20	6.4	90.9	2.8	-1.64	0.74	0.82	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38835	4701	40	0	19	0	0	logfile
✘	5XTH	6775	2023-05-05	2017-06-19	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	115642	14193	113	0	63	0	0	logfile
✘	5W9o	8790	2023-05-14	2017-06-23	4.5	4.59	4.45	4.5	0.013	1.66	0.0	0.08	10.49	0.01	1.325	7.98	0.08	3.9	95.4	0.7	1.29	0.73	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32958	4257	12	0	0	0	0	logfile
✘	5W9J	8785	2023-05-14	2017-06-23	4.8	4.91	5.09	4.7	0.013	1.57	0.0	0.07	11.98	0.02	1.881	5.79	0.90	4.0	94.8	1.2	0.53	0.78	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32958	4257	12	0	0	0	0	logfile
✘	5WC3	8795	2023-05-06	2017-06-29	3.5	3.53	—	3.5	0.015	1.18	0.0	0.06	9.37	0.01	1.925	12.86	0.00	8.0	90.5	1.5	-5.20	0.79	0.76	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65880	4170	30	0	0	0	33390	logfile
✘	5WEL	8820	2023-05-11	2017-07-10	4.4	4.52	—	4.4	0.006	0.98	0.0	0.64	9.59	0.01	2.206	6.86	0.61	6.5	93.4	0.1	-4.07	0.69	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27638	3484	8	0	6	0	0	logfile
✘	5WP6	8871	2023-05-12	2017-08-03	3.8	4.03	—	3.8	0.062	4.81	0.0	0.06	10.88	0.01	2.083	3.10	0.30	6.7	93.3	0.0	-3.61	0.70	0.83	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29036	3908	8	0	8	0	0	logfile
✘	5ooM	3843	2023-05-14	2017-08-08	3.03	5.11	3.03	4.9	0.016	1.29	1.0	0.07	14.23	0.01	1.296	6.33	0.94	5.4	94.5	0.1	-3.55	0.77	0.61	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	90739	8105	61	1148	80	0	0	logfile
✘	5Y88	6817	2023-05-10	2017-08-20	3.46	3.56	—	3.5	0.011	1.45	25.0	0.11	15.50	0.01	1.112	25.56	5.35	6.2	92.6	1.2	-2.93	0.54	0.64	1.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72347	9113	50	337	14	0	0	logfile
✘	5BK4	9400	2023-05-05	2017-09-12	3.9	4.14	—	4.1	0.008	1.24	0.0	0.06	14.44	0.01	2.234	5.12	1.24	12.2	87.6	0.2	-4.81	0.81	0.79	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62482	7636	22	120	8	0	0	logfile
✘	6EM1	3893	2023-05-16	2017-10-01	3.6	3.71	—	3.6	0.009	1.37	48.0	0.11	18.65	0.01	0.990	8.28	9.41	9.4	87.5	3.1	-4.15	0.79	0.83	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	99980	7072	45	2008	2	0	0	logfile
✘	6BBM	7076	2023-05-10	2017-10-18	4.1	4.24	—	4.1	0.008	1.20	0.0	0.06	16.70	0.01	2.231	9.86	0.58	13.8	86.1	0.2	-5.97	0.74	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23956	2662	15	0	623	0	0	logfile
✘	6BCL	7082	2023-05-13	2017-10-20	3.54	3.64	—	3.6	0.008	0.96	0.0	0.05	9.61	0.01	2.324	3.07	0.38	5.8	94.2	0.0	-4.83	0.63	0.80	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30474	3868	5	0	2	0	0	logfile
✘	5YLZ	6839	2023-05-11	2017-10-20	3.6	3.71	—	3.7	0.013	1.68	60.0	0.11	15.90	0.01	1.581	22.37	4.17	11.6	86.4	2.0	-4.62	0.55	0.59	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76247	9095	49	373	14	0	0	logfile
✘	6EZ8	3984	2023-05-08	2017-11-14	4.0	4.07	—	4.1	0.007	1.29	0.0	0.06	11.10	0.01	2.277	4.82	0.83	6.1	93.6	0.3	-5.17	0.61	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20491	2621	2	0	0	0	0	logfile
✘	6F0K	4165	2023-05-16	2017-11-20	3.87	3.98	—	3.9	0.022	1.29	0.0	0.14	11.89	0.01	1.943	8.80	0.00	14.2	85.8	0.0	-5.22	0.65	0.72	1.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39868	2504	10	0	10	0	19577	logfile
✘	6F1T	4168	2023-05-15	2017-11-23	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-4.05	—	—	1.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92795	11785	55	0	2212	0	0	logfile
✘	6BQ1	7129	2023-05-15	2017-11-27	3.6	3.71	—	3.6	0.007	0.95	6.0	0.05	9.09	0.01	1.899	27.65	0.11	5.2	94.8	0.0	-3.86	0.60	0.49	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37163	4050	8	0	955	0	0	logfile
✘	6BPZ	7128	2023-05-09	2017-11-27	3.8	3.99	—	3.8	0.010	1.55	0.0	0.08	11.48	0.01	2.260	3.97	0.14	7.9	91.8	0.2	-4.66	0.55	0.66	1.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21453	2523	3	0	177	0	0	logfile

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