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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5W68 | 8778 | 2023-05-16 | 2017-06-16 | 3.3 | 3.84 | — | 4.0 | 0.006 | 0.89 | 0.0 | 0.06 | 10.33 | 0.01 | 2.206 | 8.50 | 0.69 | 8.5 | 91.5 | 0.0 | -5.31 | 0.73 | 0.78 | 2.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39390 | 5250 | 15 | 0 | 0 | 0 | 0 | logfile |
✘ | 5XTC | 6772 | 2023-05-15 | 2017-06-19 | 3.7 | 3.85 | — | 3.7 | 0.014 | 1.55 | 1.0 | 0.07 | 12.55 | 0.01 | 1.049 | 26.41 | 1.20 | 6.4 | 90.9 | 2.8 | -1.64 | 0.74 | 0.82 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38835 | 4701 | 40 | 0 | 19 | 0 | 0 | logfile |
✘ | 5XTH | 6775 | 2023-05-05 | 2017-06-19 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115642 | 14193 | 113 | 0 | 63 | 0 | 0 | logfile |
✘ | 5W9o | 8790 | 2023-05-14 | 2017-06-23 | 4.5 | 4.59 | 4.45 | 4.5 | 0.013 | 1.66 | 0.0 | 0.08 | 10.49 | 0.01 | 1.325 | 7.98 | 0.08 | 3.9 | 95.4 | 0.7 | 1.29 | 0.73 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32958 | 4257 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 5W9J | 8785 | 2023-05-14 | 2017-06-23 | 4.8 | 4.91 | 5.09 | 4.7 | 0.013 | 1.57 | 0.0 | 0.07 | 11.98 | 0.02 | 1.881 | 5.79 | 0.90 | 4.0 | 94.8 | 1.2 | 0.53 | 0.78 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32958 | 4257 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 5WC3 | 8795 | 2023-05-06 | 2017-06-29 | 3.5 | 3.53 | — | 3.5 | 0.015 | 1.18 | 0.0 | 0.06 | 9.37 | 0.01 | 1.925 | 12.86 | 0.00 | 8.0 | 90.5 | 1.5 | -5.20 | 0.79 | 0.76 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65880 | 4170 | 30 | 0 | 0 | 0 | 33390 | logfile |
✘ | 5WEL | 8820 | 2023-05-11 | 2017-07-10 | 4.4 | 4.52 | — | 4.4 | 0.006 | 0.98 | 0.0 | 0.64 | 9.59 | 0.01 | 2.206 | 6.86 | 0.61 | 6.5 | 93.4 | 0.1 | -4.07 | 0.69 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27638 | 3484 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 5WP6 | 8871 | 2023-05-12 | 2017-08-03 | 3.8 | 4.03 | — | 3.8 | 0.062 | 4.81 | 0.0 | 0.06 | 10.88 | 0.01 | 2.083 | 3.10 | 0.30 | 6.7 | 93.3 | 0.0 | -3.61 | 0.70 | 0.83 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29036 | 3908 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 5ooM | 3843 | 2023-05-14 | 2017-08-08 | 3.03 | 5.11 | 3.03 | 4.9 | 0.016 | 1.29 | 1.0 | 0.07 | 14.23 | 0.01 | 1.296 | 6.33 | 0.94 | 5.4 | 94.5 | 0.1 | -3.55 | 0.77 | 0.61 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90739 | 8105 | 61 | 1148 | 80 | 0 | 0 | logfile |
✘ | 5Y88 | 6817 | 2023-05-10 | 2017-08-20 | 3.46 | 3.56 | — | 3.5 | 0.011 | 1.45 | 25.0 | 0.11 | 15.50 | 0.01 | 1.112 | 25.56 | 5.35 | 6.2 | 92.6 | 1.2 | -2.93 | 0.54 | 0.64 | 1.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72347 | 9113 | 50 | 337 | 14 | 0 | 0 | logfile |
✘ | 5BK4 | 9400 | 2023-05-05 | 2017-09-12 | 3.9 | 4.14 | — | 4.1 | 0.008 | 1.24 | 0.0 | 0.06 | 14.44 | 0.01 | 2.234 | 5.12 | 1.24 | 12.2 | 87.6 | 0.2 | -4.81 | 0.81 | 0.79 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62482 | 7636 | 22 | 120 | 8 | 0 | 0 | logfile |
✘ | 6EM1 | 3893 | 2023-05-16 | 2017-10-01 | 3.6 | 3.71 | — | 3.6 | 0.009 | 1.37 | 48.0 | 0.11 | 18.65 | 0.01 | 0.990 | 8.28 | 9.41 | 9.4 | 87.5 | 3.1 | -4.15 | 0.79 | 0.83 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99980 | 7072 | 45 | 2008 | 2 | 0 | 0 | logfile |
✘ | 6BBM | 7076 | 2023-05-10 | 2017-10-18 | 4.1 | 4.24 | — | 4.1 | 0.008 | 1.20 | 0.0 | 0.06 | 16.70 | 0.01 | 2.231 | 9.86 | 0.58 | 13.8 | 86.1 | 0.2 | -5.97 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23956 | 2662 | 15 | 0 | 623 | 0 | 0 | logfile |
✘ | 6BCL | 7082 | 2023-05-13 | 2017-10-20 | 3.54 | 3.64 | — | 3.6 | 0.008 | 0.96 | 0.0 | 0.05 | 9.61 | 0.01 | 2.324 | 3.07 | 0.38 | 5.8 | 94.2 | 0.0 | -4.83 | 0.63 | 0.80 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30474 | 3868 | 5 | 0 | 2 | 0 | 0 | logfile |
✘ | 5YLZ | 6839 | 2023-05-11 | 2017-10-20 | 3.6 | 3.71 | — | 3.7 | 0.013 | 1.68 | 60.0 | 0.11 | 15.90 | 0.01 | 1.581 | 22.37 | 4.17 | 11.6 | 86.4 | 2.0 | -4.62 | 0.55 | 0.59 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76247 | 9095 | 49 | 373 | 14 | 0 | 0 | logfile |
✘ | 6EZ8 | 3984 | 2023-05-08 | 2017-11-14 | 4.0 | 4.07 | — | 4.1 | 0.007 | 1.29 | 0.0 | 0.06 | 11.10 | 0.01 | 2.277 | 4.82 | 0.83 | 6.1 | 93.6 | 0.3 | -5.17 | 0.61 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20491 | 2621 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6F0K | 4165 | 2023-05-16 | 2017-11-20 | 3.87 | 3.98 | — | 3.9 | 0.022 | 1.29 | 0.0 | 0.14 | 11.89 | 0.01 | 1.943 | 8.80 | 0.00 | 14.2 | 85.8 | 0.0 | -5.22 | 0.65 | 0.72 | 1.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39868 | 2504 | 10 | 0 | 10 | 0 | 19577 | logfile |
✘ | 6F1T | 4168 | 2023-05-15 | 2017-11-23 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.05 | — | — | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 92795 | 11785 | 55 | 0 | 2212 | 0 | 0 | logfile |
✘ | 6BQ1 | 7129 | 2023-05-15 | 2017-11-27 | 3.6 | 3.71 | — | 3.6 | 0.007 | 0.95 | 6.0 | 0.05 | 9.09 | 0.01 | 1.899 | 27.65 | 0.11 | 5.2 | 94.8 | 0.0 | -3.86 | 0.60 | 0.49 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37163 | 4050 | 8 | 0 | 955 | 0 | 0 | logfile |
✘ | 6BPZ | 7128 | 2023-05-09 | 2017-11-27 | 3.8 | 3.99 | — | 3.8 | 0.010 | 1.55 | 0.0 | 0.08 | 11.48 | 0.01 | 2.260 | 3.97 | 0.14 | 7.9 | 91.8 | 0.2 | -4.66 | 0.55 | 0.66 | 1.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21453 | 2523 | 3 | 0 | 177 | 0 | 0 | logfile |