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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6LY5 | 30012 | 2023-05-13 | 2020-02-13 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81344 | 6510 | 76 | 0 | 723 | 153 | 0 | logfile |
✘ | 5GJQ | 9511 | 2023-05-16 | 2016-07-01 | 4.35 | 4.02 | — | 3.8 | 0.016 | 1.83 | 29.0 | 0.09 | 16.70 | 0.01 | 1.073 | 47.82 | 10.02 | 11.3 | 84.5 | 4.2 | -4.17 | 0.79 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98461 | 13520 | 54 | 0 | 6 | 0 | 0 | logfile |
✘ | 6ZZY | 11589 | 2023-05-03 | 2020-08-05 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54609 | 4594 | 44 | 0 | 379 | 0 | 0 | logfile |
✘ | 8APD | 15566 | 2023-05-10 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 60 | 0 | 36 | 0 | 62392 | logfile |
✘ | 7WS3 | 32742 | 2023-05-12 | 2022-01-28 | 3.6 | 4.00 | — | 3.8 | 0.004 | 0.65 | 0.0 | 0.05 | 13.11 | 0.00 | 2.202 | 7.83 | 0.03 | 3.2 | 96.8 | 0.0 | -0.92 | 0.80 | 0.76 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30215 | 3811 | 27 | 0 | 54 | 0 | 0 | logfile |
✘ | 7AA5 | 11690 | 2023-05-08 | 2020-09-03 | 4.18 | 4.64 | — | 4.4 | 0.006 | 0.92 | 2.0 | 0.04 | 14.67 | 0.00 | 2.119 | 21.41 | 2.04 | 15.1 | 84.7 | 0.2 | -4.78 | 0.69 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19705 | 2448 | 5 | 0 | 1 | 0 | 8 | logfile |
✘ | 7UT7 | 26757 | 2023-05-07 | 2022-04-26 | 1.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16442 | 1998 | 12 | 0 | 8 | 415 | 0 | logfile |
✘ | 8D7R | 27231 | 2023-05-04 | 2022-06-07 | 3.9 | 4.13 | 3.91 | 4.0 | 0.003 | 0.54 | 0.0 | 0.04 | 11.99 | 0.00 | 2.345 | 5.62 | 0.00 | 8.1 | 91.9 | 0.0 | -3.25 | 0.60 | 0.56 | 0.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9627 | 1167 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 7ZGK | 14708 | 2023-05-06 | 2022-04-03 | 3.59 | 4.63 | 3.57 | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 13.81 | 0.00 | 0.454 | 5.10 | 0.46 | 2.2 | 97.6 | 0.2 | 1.65 | 0.73 | 0.55 | 1.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13639 | 1723 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GoA | 9529 | 2023-05-17 | 2016-07-26 | 4.2 | 4.52 | — | 4.2 | 0.022 | 1.86 | 60.0 | 0.12 | 12.40 | 0.01 | 1.505 | 7.29 | 1.03 | 8.5 | 90.9 | 0.7 | -4.96 | 0.81 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105072 | 13692 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6QC4 | 4496 | 2023-05-16 | 2018-12-26 | 4.6 | 4.73 | 4.64 | 4.6 | 0.006 | 1.11 | 0.0 | 0.85 | 11.18 | 0.01 | 1.949 | 7.33 | 0.38 | 10.8 | 89.0 | 0.1 | -3.76 | 0.73 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 96705 | 12008 | 81 | 0 | 85 | 0 | 0 | logfile |
✘ | 7E1W | 30944 | 2023-05-16 | 2021-02-03 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 42695 | 5132 | 35 | 0 | 59 | 1 | 0 | logfile |
✘ | 7E1X | 30945 | 2023-05-16 | 2021-02-03 | 2.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 42679 | 5132 | 34 | 0 | 59 | 0 | 0 | logfile |
✘ | 7E1V | 30943 | 2023-05-16 | 2021-02-03 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 42279 | 5122 | 34 | 0 | 59 | 0 | 0 | logfile |
✘ | 5VFR | 8665 | 2023-05-16 | 2017-04-09 | 4.9 | 5.02 | — | 4.8 | 0.006 | 1.24 | 5.0 | 0.07 | 11.75 | 0.01 | 2.042 | 10.70 | 0.74 | 9.6 | 89.8 | 0.6 | -4.40 | 0.71 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99908 | 12868 | 51 | 0 | 5 | 0 | 0 | logfile |
✘ | 5GJR | 9512 | 2023-05-16 | 2016-07-01 | 3.5 | 3.65 | — | 3.5 | 0.013 | 1.53 | 38.0 | 0.08 | 16.77 | 0.01 | 1.114 | 63.72 | 11.56 | 13.2 | 81.8 | 5.0 | -4.66 | 0.71 | 0.77 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142753 | 19945 | 76 | 0 | 12 | 0 | 0 | logfile |
✘ | 7ZK5 | 14755 | 2023-05-04 | 2022-04-12 | 2.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9435 | 1177 | 1 | 0 | 10 | 33 | 0 | logfile |
✘ | 5Go9 | 9528 | 2023-05-17 | 2016-07-26 | 4.4 | 4.59 | — | 4.4 | 0.020 | 1.79 | 36.0 | 0.11 | 12.27 | 0.01 | 2.185 | 7.55 | 0.88 | 8.7 | 90.7 | 0.6 | -4.90 | 0.78 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105068 | 13692 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 7RBU | 24402 | 2023-05-03 | 2021-07-06 | 3.7 | 2.38 | — | 2.2 | 0.006 | 0.80 | 0.0 | 0.05 | 12.53 | 0.00 | 2.167 | 6.95 | 0.00 | 9.1 | 90.7 | 0.2 | -2.50 | 0.74 | 0.77 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4107 | 510 | 6 | 0 | 7 | 0 | 0 | logfile |
✘ | 8AVV | 15684 | 2023-05-03 | 2022-08-27 | 3.4 | 3.53 | 3.39 | 3.5 | 0.008 | 1.38 | 0.0 | 0.08 | 18.27 | 0.01 | 2.580 | 1.80 | 5.03 | 4.7 | 95.1 | 0.2 | -3.08 | 0.76 | 0.87 | 2.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7794 | 1010 | 4 | 0 | 2 | 0 | 0 | logfile |