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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7oTo | 13063 | 2023-10-05 | 2021-06-10 | 3.4 | 2.27 | — | 1.3 | 0.013 | 1.84 | 0.0 | 0.11 | 15.17 | 0.01 | 1.799 | 3.86 | 0.00 | 1.5 | 98.5 | 0.0 | 2.59 | 0.76 | 0.74 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10333 | 1313 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 8FKU | 29257 | 2023-10-10 | 2022-12-21 | 2.82 | 3.05 | 2.91 | 3.0 | 0.006 | 0.64 | 0.0 | 0.04 | 13.24 | 0.01 | 1.935 | 1.98 | 0.01 | 1.6 | 98.4 | 0.0 | 1.03 | 0.75 | 0.83 | 3.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 125869 | 9435 | 62 | 2407 | 62 | 0 | 0 | logfile |
✘ | 7Z15 | 14441 | 2023-10-20 | 2022-02-24 | 1.93 | 2.40 | 1.98 | 2.3 | 0.012 | 1.01 | 9.0 | 0.06 | 15.49 | 0.01 | 1.723 | 3.87 | 0.83 | 1.6 | 98.4 | 0.0 | 1.32 | 0.83 | 0.86 | 6.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46112 | 2888 | 32 | 0 | 16 | 1171 | 22357 | logfile |
✘ | 7ZVT | 14986 | 2023-10-04 | 2022-05-17 | 2.74 | 3.38 | 2.78 | 3.2 | 0.004 | 0.57 | 0.0 | 0.04 | 19.17 | 0.00 | 2.192 | 7.49 | 2.94 | 1.6 | 98.4 | 0.0 | 1.55 | 0.83 | 0.89 | 3.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8842 | 1022 | 4 | 30 | 1 | 0 | 0 | logfile |
✘ | 8CSP | 26966 | 2023-10-10 | 2022-05-13 | 2.66 | 2.56 | 2.70 | 2.8 | 0.004 | 0.65 | 0.0 | 0.39 | 14.80 | 0.01 | 1.957 | 2.81 | 0.00 | 1.7 | 98.3 | 0.0 | 0.74 | 0.72 | 0.79 | 3.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69302 | 6645 | 40 | 738 | 38 | 0 | 0 | logfile |
✘ | 8CSR | 26968 | 2023-10-10 | 2022-05-13 | 2.54 | 2.48 | 2.56 | 2.6 | 0.004 | 0.65 | 0.0 | 0.38 | 14.52 | 0.01 | 1.910 | 2.68 | 0.00 | 1.7 | 98.3 | 0.0 | 1.19 | 0.72 | 0.78 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69868 | 6354 | 42 | 854 | 43 | 46 | 0 | logfile |
✘ | 7NPU | 12521 | 2023-10-10 | 2021-02-28 | 4.48 | 4.74 | 4.43 | 3.8 | 0.008 | 1.19 | 0.0 | 0.06 | 11.87 | 0.01 | 2.086 | 1.37 | 0.37 | 1.8 | 98.1 | 0.1 | -0.61 | 0.66 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126727 | 8230 | 24 | 0 | 0 | 0 | 64397 | logfile |
✘ | 8EEY | 28065 | 2023-10-10 | 2022-09-07 | 2.53 | 2.25 | 2.57 | 2.5 | 0.006 | 0.88 | 0.0 | 0.05 | 15.16 | 0.01 | 1.937 | 0.37 | 0.14 | 1.8 | 98.1 | 0.0 | 0.01 | 0.60 | 0.80 | 4.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20886 | 2393 | 6 | 66 | 4 | 0 | 0 | logfile |
✘ | 7UZQ | 26916 | 2023-10-10 | 2022-05-09 | 2.17 | 2.05 | 2.16 | 2.1 | 0.006 | 0.92 | 0.0 | 0.05 | 16.21 | 0.01 | 2.215 | 4.59 | 2.27 | 1.8 | 98.0 | 0.2 | 2.16 | 0.68 | 0.87 | 5.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | 1.79 | — | — | — | 5.85 | 20617 | 1315 | 10 | 0 | 4 | 235 | 10214 | logfile |
✘ | 7ZG7 | 14705 | 2023-10-18 | 2022-04-02 | 1.77 | 1.79 | 1.79 | 1.8 | 0.004 | 0.74 | 0.0 | 0.04 | 14.44 | 0.01 | 1.952 | 3.06 | 0.00 | 1.8 | 98.2 | 0.0 | 3.49 | 0.77 | 0.86 | 9.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39086 | 4128 | 72 | 0 | 382 | 2680 | 0 | logfile |
✘ | 6UZZ | 20965 | 2023-10-08 | 2019-11-16 | 3.1 | 3.48 | — | 3.4 | 0.009 | 0.92 | 0.0 | 0.06 | 10.61 | 0.01 | 2.325 | 2.53 | 0.24 | 1.8 | 98.0 | 0.2 | -4.22 | 0.60 | 0.81 | 3.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15832 | 1984 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 8EX4 | 28650 | 2023-10-02 | 2022-10-24 | 2.93 | 3.19 | 2.90 | 3.2 | 0.005 | 0.73 | 0.0 | 0.04 | 13.95 | 0.00 | 2.165 | 9.46 | 0.00 | 1.9 | 98.1 | 0.0 | 0.40 | 0.59 | 0.80 | 4.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3226 | 417 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 7SY3 | 25515 | 2023-10-13 | 2021-11-24 | 2.95 | 3.95 | — | 3.2 | 0.005 | 0.82 | 0.0 | 0.06 | 13.42 | 0.01 | 2.278 | 2.67 | 0.00 | 1.9 | 98.1 | 0.0 | -0.06 | 0.84 | 0.82 | 2.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27001 | 3321 | 26 | 0 | 62 | 0 | 0 | logfile |
✘ | 8DGC | 27421 | 2023-10-14 | 2022-06-23 | 3.4 | 3.02 | 3.70 | 3.0 | 0.006 | 0.96 | 2.0 | 0.05 | 13.60 | 0.01 | 1.993 | 1.47 | 0.14 | 1.9 | 98.1 | 0.0 | -0.33 | 0.51 | 0.52 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81600 | 10216 | 16 | 0 | 16 | 0 | 0 | logfile |
✘ | 7LB5 | 23263 | 2023-10-11 | 2021-01-07 | 3.16 | 4.00 | — | 3.7 | 0.003 | 0.52 | 0.0 | 0.04 | 14.28 | 0.00 | 2.323 | 7.12 | 0.93 | 1.9 | 98.1 | 0.0 | -1.95 | 0.87 | 0.84 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23616 | 3120 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Z18 | 14444 | 2023-10-18 | 2022-02-24 | 1.98 | 2.40 | 2.04 | 2.3 | 0.008 | 0.94 | 0.0 | 0.06 | 15.02 | 0.01 | 1.726 | 3.36 | 1.19 | 1.9 | 98.1 | 0.0 | 1.45 | 0.79 | 0.82 | 5.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37659 | 2432 | 18 | 0 | 10 | 2 | 18660 | logfile |
✘ | 8DR4 | 27670 | 2023-10-20 | 2022-07-20 | 2.45 | 3.17 | 2.59 | 3.0 | 0.008 | 0.56 | 0.0 | 0.04 | 18.35 | 0.00 | 1.929 | 2.78 | 0.91 | 1.9 | 98.1 | 0.0 | 1.85 | 0.84 | 0.85 | 3.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43471 | 2600 | 17 | 63 | 8 | 0 | 21549 | logfile |
✘ | 6M0S | 30035 | 2023-10-20 | 2020-02-22 | 3.6 | 3.77 | — | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 8.18 | 0.00 | 2.205 | 1.30 | 0.00 | 1.9 | 98.1 | 0.0 | -4.94 | 0.71 | 0.74 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44660 | 2909 | 15 | 0 | 0 | 0 | 22618 | logfile |
✘ | 8PEo | 17633 | 2023-10-06 | 2023-06-14 | 2.69 | 3.21 | 2.84 | 2.7 | 0.005 | 0.77 | 0.0 | 0.05 | 29.93 | 0.01 | 2.201 | 8.09 | 0.14 | 1.9 | 98.1 | 0.0 | 0.99 | 0.92 | 0.88 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12835 | 853 | 12 | 294 | 0 | 0 | 0 | logfile |
✘ | 6KN8 | 0729 | 2023-10-05 | 2019-08-03 | 4.8 | 8.89 | — | 8.4 | 0.019 | 1.81 | 10.0 | 0.10 | 12.39 | 0.01 | 2.211 | 9.21 | 0.41 | 2.0 | 97.4 | 0.5 | -0.24 | 0.74 | 0.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60966 | 7669 | 44 | 0 | 15 | 0 | 0 | logfile |