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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7VAV | 31866 | 2023-05-12 | 2021-08-30 | 2.8 | 2.66 | 3.31 | 3.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.26 | 0.00 | 2.035 | 3.96 | 0.00 | 1.5 | 98.5 | 0.0 | 1.80 | 0.63 | 0.80 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29520 | 3787 | 14 | 0 | 4 | 0 | 0 | logfile |
✘ | 8CUE | 26999 | 2023-05-15 | 2022-05-17 | 3.2 | 3.57 | 3.25 | 3.7 | 0.010 | 1.82 | 0.0 | 0.04 | 21.60 | 0.00 | 2.541 | 2.88 | 0.00 | 1.5 | 98.5 | 0.0 | 0.78 | 0.73 | 0.83 | 2.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37240 | 4900 | 140 | 0 | 70 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2023-05-10 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 7JMC | 22391 | 2023-05-17 | 2020-07-31 | 2.5 | 2.76 | 2.68 | 2.7 | 0.010 | 1.29 | 0.0 | 0.06 | 13.90 | 0.01 | 2.249 | 2.77 | 0.57 | 1.6 | 98.4 | 0.0 | 3.40 | 0.62 | 0.82 | 4.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39828 | 2304 | 36 | 0 | 144 | 168 | 18576 | logfile |
✘ | 7T4M | 25680 | 2023-05-16 | 2021-12-10 | 2.48 | 2.77 | 2.55 | 2.7 | 0.001 | 0.38 | 0.0 | 0.04 | 9.69 | 0.00 | 2.253 | 4.85 | 0.97 | 1.6 | 98.4 | 0.0 | 1.34 | 0.72 | 0.86 | 4.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39054 | 4854 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Z15 | 14441 | 2023-05-17 | 2022-02-24 | 1.93 | 2.40 | 1.98 | 2.3 | 0.012 | 1.01 | 9.0 | 0.06 | 15.49 | 0.01 | 1.723 | 3.87 | 0.83 | 1.6 | 98.4 | 0.0 | 1.32 | 0.83 | 0.86 | 6.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46112 | 2888 | 32 | 0 | 16 | 1171 | 22357 | logfile |
✘ | 8DBU | 27307 | 2023-05-15 | 2022-06-14 | 3.4 | 3.79 | 3.34 | 3.4 | 0.004 | 0.83 | 3.0 | 0.05 | 14.18 | 0.01 | 1.900 | 2.64 | 0.76 | 1.6 | 98.4 | 0.0 | -0.05 | 0.77 | 0.84 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.80 | — | — | — | 2.11 | 36917 | 4845 | 28 | 0 | 11 | 0 | 0 | logfile |
✘ | 7SiD | 25141 | 2023-05-17 | 2021-10-13 | 2.53 | 2.17 | — | 2.7 | 0.003 | 0.53 | 0.0 | 0.04 | 14.33 | 0.01 | 2.072 | 4.12 | 0.77 | 1.7 | 98.3 | 0.0 | 2.49 | 0.61 | 0.61 | 1.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44650 | 5566 | 6 | 0 | 4 | 0 | 0 | logfile |
✘ | 8CSR | 26968 | 2023-05-09 | 2022-05-13 | 2.54 | 2.48 | 2.56 | 2.6 | 0.004 | 0.65 | 0.0 | 0.38 | 14.52 | 0.01 | 1.910 | 2.68 | 0.00 | 1.7 | 98.3 | 0.0 | 1.19 | 0.72 | 0.78 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69868 | 6354 | 42 | 854 | 43 | 46 | 0 | logfile |
✘ | 6Q05 | 20543 | 2023-05-12 | 2019-08-01 | 2.8 | 2.78 | — | 2.7 | 0.025 | 2.06 | 27.0 | 0.16 | 11.50 | 0.01 | 2.255 | 2.06 | 0.91 | 1.7 | 98.3 | 0.1 | 0.58 | 0.76 | 0.80 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28977 | 3477 | 42 | 0 | 144 | 195 | 0 | logfile |
✘ | 6UZZ | 20965 | 2023-05-07 | 2019-11-16 | 3.1 | 3.48 | — | 3.4 | 0.009 | 0.92 | 0.0 | 0.06 | 10.61 | 0.01 | 2.325 | 2.53 | 0.24 | 1.8 | 98.0 | 0.2 | -4.22 | 0.60 | 0.81 | 3.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15832 | 1984 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 7ZG7 | 14705 | 2023-05-15 | 2022-04-02 | 1.77 | 1.79 | 1.79 | 1.8 | 0.004 | 0.74 | 0.0 | 0.04 | 14.44 | 0.01 | 1.952 | 3.06 | 0.00 | 1.8 | 98.2 | 0.0 | 3.49 | 0.77 | 0.86 | 9.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39086 | 4128 | 72 | 0 | 382 | 2680 | 0 | logfile |
✘ | 7LB5 | 23263 | 2023-05-10 | 2021-01-07 | 3.16 | 4.00 | — | 3.7 | 0.003 | 0.52 | 0.0 | 0.04 | 14.28 | 0.00 | 2.323 | 7.12 | 0.93 | 1.9 | 98.1 | 0.0 | -1.95 | 0.87 | 0.84 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23616 | 3120 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Z18 | 14444 | 2023-05-15 | 2022-02-24 | 1.98 | 2.40 | 2.04 | 2.3 | 0.008 | 0.94 | 0.0 | 0.06 | 15.02 | 0.01 | 1.726 | 3.36 | 1.19 | 1.9 | 98.1 | 0.0 | 1.45 | 0.79 | 0.82 | 5.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37659 | 2432 | 18 | 0 | 10 | 2 | 18660 | logfile |
✘ | 7SY3 | 25515 | 2023-05-11 | 2021-11-24 | 2.95 | 3.95 | — | 3.2 | 0.005 | 0.82 | 0.0 | 0.06 | 13.42 | 0.01 | 2.278 | 2.67 | 0.00 | 1.9 | 98.1 | 0.0 | -0.06 | 0.84 | 0.82 | 2.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27001 | 3321 | 26 | 0 | 62 | 0 | 0 | logfile |
✘ | 8DGC | 27421 | 2023-05-13 | 2022-06-23 | 3.4 | 3.02 | 3.70 | 3.0 | 0.006 | 0.96 | 2.0 | 0.05 | 13.60 | 0.01 | 1.993 | 1.47 | 0.14 | 1.9 | 98.1 | 0.0 | -0.33 | 0.51 | 0.52 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81600 | 10216 | 16 | 0 | 16 | 0 | 0 | logfile |
✘ | 7XDB | 33142 | 2023-05-12 | 2022-03-26 | 2.62 | 2.82 | 2.70 | 2.8 | 0.004 | 0.64 | 0.0 | 0.05 | 12.28 | 0.01 | 2.111 | 9.82 | 0.00 | 1.9 | 98.1 | 0.0 | 0.54 | 0.69 | 0.83 | 3.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30189 | 3779 | 23 | 0 | 38 | 0 | 0 | logfile |
✘ | 8E01 | 27812 | 2023-05-15 | 2022-08-08 | 3.4 | 3.80 | 3.71 | 3.8 | 0.002 | 0.56 | 0.0 | 0.04 | 17.85 | 0.00 | 2.278 | 9.40 | 0.41 | 2.0 | 98.0 | 0.0 | -0.28 | 0.63 | 0.61 | 0.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 91080 | 12060 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 8A01 | 15044 | 2023-05-03 | 2022-05-26 | 3.2 | 3.25 | 3.20 | 3.2 | 0.002 | 0.44 | 0.0 | 0.05 | 14.81 | 0.00 | 2.289 | 4.13 | 0.00 | 2.0 | 98.0 | 0.0 | 0.02 | 0.48 | 0.86 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5511 | 717 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6KN8 | 0729 | 2023-05-04 | 2019-08-03 | 4.8 | 8.89 | — | 8.4 | 0.019 | 1.81 | 10.0 | 0.10 | 12.39 | 0.01 | 2.211 | 9.21 | 0.41 | 2.0 | 97.4 | 0.5 | -0.24 | 0.74 | 0.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60966 | 7669 | 44 | 0 | 15 | 0 | 0 | logfile |