Table showing results for October 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7oTo	13063	2023-10-05	2021-06-10	3.4	2.27	—	1.3	0.013	1.84	0.0	0.11	15.17	0.01	1.799	3.86	0.00	1.5	98.5	0.0	2.59	0.76	0.74	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10333	1313	4	0	4	0	0	logfile
✘	8FKU	29257	2023-10-10	2022-12-21	2.82	3.05	2.91	3.0	0.006	0.64	0.0	0.04	13.24	0.01	1.935	1.98	0.01	1.6	98.4	0.0	1.03	0.75	0.83	3.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	125869	9435	62	2407	62	0	0	logfile
✘	7Z15	14441	2023-10-20	2022-02-24	1.93	2.40	1.98	2.3	0.012	1.01	9.0	0.06	15.49	0.01	1.723	3.87	0.83	1.6	98.4	0.0	1.32	0.83	0.86	6.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46112	2888	32	0	16	1171	22357	logfile
✘	7ZVT	14986	2023-10-04	2022-05-17	2.74	3.38	2.78	3.2	0.004	0.57	0.0	0.04	19.17	0.00	2.192	7.49	2.94	1.6	98.4	0.0	1.55	0.83	0.89	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8842	1022	4	30	1	0	0	logfile
✘	8CSP	26966	2023-10-10	2022-05-13	2.66	2.56	2.70	2.8	0.004	0.65	0.0	0.39	14.80	0.01	1.957	2.81	0.00	1.7	98.3	0.0	0.74	0.72	0.79	3.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69302	6645	40	738	38	0	0	logfile
✘	8CSR	26968	2023-10-10	2022-05-13	2.54	2.48	2.56	2.6	0.004	0.65	0.0	0.38	14.52	0.01	1.910	2.68	0.00	1.7	98.3	0.0	1.19	0.72	0.78	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69868	6354	42	854	43	46	0	logfile
✘	7NPU	12521	2023-10-10	2021-02-28	4.48	4.74	4.43	3.8	0.008	1.19	0.0	0.06	11.87	0.01	2.086	1.37	0.37	1.8	98.1	0.1	-0.61	0.66	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126727	8230	24	0	0	0	64397	logfile
✘	8EEY	28065	2023-10-10	2022-09-07	2.53	2.25	2.57	2.5	0.006	0.88	0.0	0.05	15.16	0.01	1.937	0.37	0.14	1.8	98.1	0.0	0.01	0.60	0.80	4.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20886	2393	6	66	4	0	0	logfile
✘	7UZQ	26916	2023-10-10	2022-05-09	2.17	2.05	2.16	2.1	0.006	0.92	0.0	0.05	16.21	0.01	2.215	4.59	2.27	1.8	98.0	0.2	2.16	0.68	0.87	5.59	—	—	—	—	—	—	—	—	—	—	—	—	—	1.79	—	—	—	5.85	20617	1315	10	0	4	235	10214	logfile
✘	7ZG7	14705	2023-10-18	2022-04-02	1.77	1.79	1.79	1.8	0.004	0.74	0.0	0.04	14.44	0.01	1.952	3.06	0.00	1.8	98.2	0.0	3.49	0.77	0.86	9.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39086	4128	72	0	382	2680	0	logfile
✘	6UZZ	20965	2023-10-08	2019-11-16	3.1	3.48	—	3.4	0.009	0.92	0.0	0.06	10.61	0.01	2.325	2.53	0.24	1.8	98.0	0.2	-4.22	0.60	0.81	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15832	1984	12	0	8	0	0	logfile
✘	8EX4	28650	2023-10-02	2022-10-24	2.93	3.19	2.90	3.2	0.005	0.73	0.0	0.04	13.95	0.00	2.165	9.46	0.00	1.9	98.1	0.0	0.40	0.59	0.80	4.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3226	417	1	0	1	0	0	logfile
✘	7SY3	25515	2023-10-13	2021-11-24	2.95	3.95	—	3.2	0.005	0.82	0.0	0.06	13.42	0.01	2.278	2.67	0.00	1.9	98.1	0.0	-0.06	0.84	0.82	2.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27001	3321	26	0	62	0	0	logfile
✘	8DGC	27421	2023-10-14	2022-06-23	3.4	3.02	3.70	3.0	0.006	0.96	2.0	0.05	13.60	0.01	1.993	1.47	0.14	1.9	98.1	0.0	-0.33	0.51	0.52	1.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	81600	10216	16	0	16	0	0	logfile
✘	7LB5	23263	2023-10-11	2021-01-07	3.16	4.00	—	3.7	0.003	0.52	0.0	0.04	14.28	0.00	2.323	7.12	0.93	1.9	98.1	0.0	-1.95	0.87	0.84	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23616	3120	12	0	0	0	0	logfile
✘	7Z18	14444	2023-10-18	2022-02-24	1.98	2.40	2.04	2.3	0.008	0.94	0.0	0.06	15.02	0.01	1.726	3.36	1.19	1.9	98.1	0.0	1.45	0.79	0.82	5.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37659	2432	18	0	10	2	18660	logfile
✘	8DR4	27670	2023-10-20	2022-07-20	2.45	3.17	2.59	3.0	0.008	0.56	0.0	0.04	18.35	0.00	1.929	2.78	0.91	1.9	98.1	0.0	1.85	0.84	0.85	3.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43471	2600	17	63	8	0	21549	logfile
✘	6M0S	30035	2023-10-20	2020-02-22	3.6	3.77	—	3.7	0.004	0.65	0.0	0.04	8.18	0.00	2.205	1.30	0.00	1.9	98.1	0.0	-4.94	0.71	0.74	1.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44660	2909	15	0	0	0	22618	logfile
✘	8PEo	17633	2023-10-06	2023-06-14	2.69	3.21	2.84	2.7	0.005	0.77	0.0	0.05	29.93	0.01	2.201	8.09	0.14	1.9	98.1	0.0	0.99	0.92	0.88	2.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12835	853	12	294	0	0	0	logfile
✘	6KN8	0729	2023-10-05	2019-08-03	4.8	8.89	—	8.4	0.019	1.81	10.0	0.10	12.39	0.01	2.211	9.21	0.41	2.0	97.4	0.5	-0.24	0.74	0.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	60966	7669	44	0	15	0	0	logfile

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