Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7o7P	12752	2023-05-16	2021-04-13	4.6	5.15	—	6.0	0.009	1.15	2.0	0.08	14.95	0.01	1.908	11.62	0.13	12.6	87.0	0.3	-4.55	0.80	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40295	5100	16	0	36	0	0	logfile
✘	6HD7	0202	2023-05-15	2018-08-17	3.4	3.54	—	3.3	0.002	0.43	0.0	0.03	14.93	0.00	0.345	24.96	0.08	11.1	87.1	1.9	-3.26	0.66	0.65	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	141153	7514	52	3767	234	0	0	logfile
✘	6WCZ	21618	2023-05-04	2020-03-31	4.0	4.24	—	4.0	0.009	1.22	0.0	0.06	12.53	0.01	2.085	14.60	2.55	12.9	87.1	0.0	-4.79	0.82	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9894	1231	2	0	2	0	0	logfile
✘	6JRS	9880	2023-05-04	2019-04-05	3.7	3.86	—	3.7	0.010	1.08	0.0	0.06	16.39	0.01	2.225	8.77	0.90	12.4	87.2	0.3	-5.87	0.74	0.80	1.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	112168	14652	20	0	24	0	0	logfile
✘	7WK0	32554	2023-05-04	2022-01-08	3.32	2.37	—	2.2	0.004	0.65	0.0	0.04	11.04	0.01	2.233	9.59	7.71	12.2	87.5	0.2	-4.96	0.75	0.75	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9724	1264	8	0	2	0	0	logfile
✘	7K1B	22623	2023-05-12	2020-09-07	4.3	4.45	—	4.3	0.005	1.05	0.0	0.06	17.37	0.01	2.268	7.67	0.55	12.2	87.5	0.3	-4.94	0.79	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29321	3589	4	48	0	0	0	logfile
✘	6i7T	4428	2023-05-15	2018-11-17	4.61	4.75	4.92	4.6	0.006	1.17	6.0	0.07	13.63	0.01	2.245	7.08	2.54	12.0	87.5	0.4	-4.32	0.74	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37004	4682	16	0	0	0	0	logfile
✘	6JiY	9837	2023-05-05	2019-02-24	3.9	4.05	—	3.9	0.008	1.06	1.0	0.05	15.49	0.01	2.203	7.76	0.47	12.2	87.5	0.2	-5.76	0.73	0.78	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	115288	15056	20	0	32	0	0	logfile
✘	6EM1	3893	2023-05-16	2017-10-01	3.6	3.71	—	3.6	0.009	1.37	48.0	0.11	18.65	0.01	0.990	8.28	9.41	9.4	87.5	3.1	-4.15	0.79	0.83	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	99980	7072	45	2008	2	0	0	logfile
✘	6QG0	4543	2023-05-15	2019-01-10	4.15	4.29	4.10	4.3	0.009	1.40	20.0	0.08	18.07	0.00	0.775	5.30	5.91	10.0	87.6	2.4	-3.14	0.56	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36980	4742	16	0	0	0	0	logfile
✘	5BK4	9400	2023-05-05	2017-09-12	3.9	4.14	—	4.1	0.008	1.24	0.0	0.06	14.44	0.01	2.234	5.12	1.24	12.2	87.6	0.2	-4.81	0.81	0.79	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62482	7636	22	120	8	0	0	logfile
✘	6RPL	4978	2023-05-15	2019-05-14	3.85	3.98	—	3.9	0.007	0.95	0.0	0.06	14.56	0.01	0.703	18.70	0.60	12.3	87.7	0.0	-4.26	0.75	0.83	3.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93960	11340	60	0	0	0	0	logfile
✘	6TM5	10518	2023-05-05	2019-12-03	3.9	4.07	—	4.1	0.010	1.11	0.0	0.05	15.92	0.01	1.619	28.83	0.76	11.9	87.8	0.3	-4.46	0.36	0.48	0.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63885	8117	23	0	3	0	0	logfile
✘	3JB9	6413	2023-05-14	2015-08-09	3.6	3.70	—	3.6	0.010	1.29	13.0	0.07	16.84	0.01	1.253	18.05	8.06	9.1	87.9	3.0	-3.97	0.52	0.51	1.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	86551	9194	50	328	1328	0	0	logfile
✘	7SWP	25478	2023-05-03	2021-11-20	3.8	3.74	—	4.0	0.008	0.92	0.0	0.05	12.87	0.01	2.202	40.14	0.00	12.1	87.9	0.0	-2.17	0.51	0.71	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3372	436	3	0	0	0	0	logfile
✘	6QC3	4495	2023-05-16	2018-12-26	4.2	4.28	4.21	4.2	0.010	1.32	1.0	0.85	12.09	0.01	1.873	8.18	0.75	11.7	88.1	0.1	-3.94	0.67	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96897	12010	84	0	77	0	0	logfile
✘	7JMH	22394	2023-05-07	2020-07-31	4.5	5.68	—	4.4	0.005	1.02	0.0	0.05	10.48	0.01	1.373	9.43	0.46	11.7	88.2	0.1	-4.60	0.56	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	5UCY	8539	2023-05-10	2016-12-22	4.6	4.99	—	4.6	0.011	1.21	3.0	0.06	13.21	0.01	0.244	89.25	0.68	11.3	88.3	0.5	-4.47	0.50	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24990	2610	12	3	6	0	4452	logfile
✘	6JGZ	9824	2023-05-04	2019-02-16	4.6	4.96	—	4.6	0.007	1.13	0.0	0.06	11.54	0.01	2.171	11.98	0.73	11.3	88.3	0.4	-4.06	0.78	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109824	14368	12	0	4	0	0	logfile
✘	6Jii	9834	2023-05-05	2019-02-21	4.2	4.38	—	4.1	0.008	1.12	0.0	0.06	11.41	0.01	2.208	7.63	0.57	11.2	88.4	0.4	-4.07	0.78	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	115028	15012	16	0	16	0	0	logfile

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