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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7o7P | 12752 | 2023-05-16 | 2021-04-13 | 4.6 | 5.15 | — | 6.0 | 0.009 | 1.15 | 2.0 | 0.08 | 14.95 | 0.01 | 1.908 | 11.62 | 0.13 | 12.6 | 87.0 | 0.3 | -4.55 | 0.80 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40295 | 5100 | 16 | 0 | 36 | 0 | 0 | logfile |
✘ | 6HD7 | 0202 | 2023-05-15 | 2018-08-17 | 3.4 | 3.54 | — | 3.3 | 0.002 | 0.43 | 0.0 | 0.03 | 14.93 | 0.00 | 0.345 | 24.96 | 0.08 | 11.1 | 87.1 | 1.9 | -3.26 | 0.66 | 0.65 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 141153 | 7514 | 52 | 3767 | 234 | 0 | 0 | logfile |
✘ | 6WCZ | 21618 | 2023-05-04 | 2020-03-31 | 4.0 | 4.24 | — | 4.0 | 0.009 | 1.22 | 0.0 | 0.06 | 12.53 | 0.01 | 2.085 | 14.60 | 2.55 | 12.9 | 87.1 | 0.0 | -4.79 | 0.82 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9894 | 1231 | 2 | 0 | 2 | 0 | 0 | logfile |
✘ | 6JRS | 9880 | 2023-05-04 | 2019-04-05 | 3.7 | 3.86 | — | 3.7 | 0.010 | 1.08 | 0.0 | 0.06 | 16.39 | 0.01 | 2.225 | 8.77 | 0.90 | 12.4 | 87.2 | 0.3 | -5.87 | 0.74 | 0.80 | 1.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112168 | 14652 | 20 | 0 | 24 | 0 | 0 | logfile |
✘ | 7WK0 | 32554 | 2023-05-04 | 2022-01-08 | 3.32 | 2.37 | — | 2.2 | 0.004 | 0.65 | 0.0 | 0.04 | 11.04 | 0.01 | 2.233 | 9.59 | 7.71 | 12.2 | 87.5 | 0.2 | -4.96 | 0.75 | 0.75 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9724 | 1264 | 8 | 0 | 2 | 0 | 0 | logfile |
✘ | 7K1B | 22623 | 2023-05-12 | 2020-09-07 | 4.3 | 4.45 | — | 4.3 | 0.005 | 1.05 | 0.0 | 0.06 | 17.37 | 0.01 | 2.268 | 7.67 | 0.55 | 12.2 | 87.5 | 0.3 | -4.94 | 0.79 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29321 | 3589 | 4 | 48 | 0 | 0 | 0 | logfile |
✘ | 6i7T | 4428 | 2023-05-15 | 2018-11-17 | 4.61 | 4.75 | 4.92 | 4.6 | 0.006 | 1.17 | 6.0 | 0.07 | 13.63 | 0.01 | 2.245 | 7.08 | 2.54 | 12.0 | 87.5 | 0.4 | -4.32 | 0.74 | 0.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37004 | 4682 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JiY | 9837 | 2023-05-05 | 2019-02-24 | 3.9 | 4.05 | — | 3.9 | 0.008 | 1.06 | 1.0 | 0.05 | 15.49 | 0.01 | 2.203 | 7.76 | 0.47 | 12.2 | 87.5 | 0.2 | -5.76 | 0.73 | 0.78 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115288 | 15056 | 20 | 0 | 32 | 0 | 0 | logfile |
✘ | 6EM1 | 3893 | 2023-05-16 | 2017-10-01 | 3.6 | 3.71 | — | 3.6 | 0.009 | 1.37 | 48.0 | 0.11 | 18.65 | 0.01 | 0.990 | 8.28 | 9.41 | 9.4 | 87.5 | 3.1 | -4.15 | 0.79 | 0.83 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99980 | 7072 | 45 | 2008 | 2 | 0 | 0 | logfile |
✘ | 6QG0 | 4543 | 2023-05-15 | 2019-01-10 | 4.15 | 4.29 | 4.10 | 4.3 | 0.009 | 1.40 | 20.0 | 0.08 | 18.07 | 0.00 | 0.775 | 5.30 | 5.91 | 10.0 | 87.6 | 2.4 | -3.14 | 0.56 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36980 | 4742 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 5BK4 | 9400 | 2023-05-05 | 2017-09-12 | 3.9 | 4.14 | — | 4.1 | 0.008 | 1.24 | 0.0 | 0.06 | 14.44 | 0.01 | 2.234 | 5.12 | 1.24 | 12.2 | 87.6 | 0.2 | -4.81 | 0.81 | 0.79 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62482 | 7636 | 22 | 120 | 8 | 0 | 0 | logfile |
✘ | 6RPL | 4978 | 2023-05-15 | 2019-05-14 | 3.85 | 3.98 | — | 3.9 | 0.007 | 0.95 | 0.0 | 0.06 | 14.56 | 0.01 | 0.703 | 18.70 | 0.60 | 12.3 | 87.7 | 0.0 | -4.26 | 0.75 | 0.83 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93960 | 11340 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 6TM5 | 10518 | 2023-05-05 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.83 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✘ | 3JB9 | 6413 | 2023-05-14 | 2015-08-09 | 3.6 | 3.70 | — | 3.6 | 0.010 | 1.29 | 13.0 | 0.07 | 16.84 | 0.01 | 1.253 | 18.05 | 8.06 | 9.1 | 87.9 | 3.0 | -3.97 | 0.52 | 0.51 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 86551 | 9194 | 50 | 328 | 1328 | 0 | 0 | logfile |
✘ | 7SWP | 25478 | 2023-05-03 | 2021-11-20 | 3.8 | 3.74 | — | 4.0 | 0.008 | 0.92 | 0.0 | 0.05 | 12.87 | 0.01 | 2.202 | 40.14 | 0.00 | 12.1 | 87.9 | 0.0 | -2.17 | 0.51 | 0.71 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3372 | 436 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6QC3 | 4495 | 2023-05-16 | 2018-12-26 | 4.2 | 4.28 | 4.21 | 4.2 | 0.010 | 1.32 | 1.0 | 0.85 | 12.09 | 0.01 | 1.873 | 8.18 | 0.75 | 11.7 | 88.1 | 0.1 | -3.94 | 0.67 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 96897 | 12010 | 84 | 0 | 77 | 0 | 0 | logfile |
✘ | 7JMH | 22394 | 2023-05-07 | 2020-07-31 | 4.5 | 5.68 | — | 4.4 | 0.005 | 1.02 | 0.0 | 0.05 | 10.48 | 0.01 | 1.373 | 9.43 | 0.46 | 11.7 | 88.2 | 0.1 | -4.60 | 0.56 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 5UCY | 8539 | 2023-05-10 | 2016-12-22 | 4.6 | 4.99 | — | 4.6 | 0.011 | 1.21 | 3.0 | 0.06 | 13.21 | 0.01 | 0.244 | 89.25 | 0.68 | 11.3 | 88.3 | 0.5 | -4.47 | 0.50 | 0.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24990 | 2610 | 12 | 3 | 6 | 0 | 4452 | logfile |
✘ | 6JGZ | 9824 | 2023-05-04 | 2019-02-16 | 4.6 | 4.96 | — | 4.6 | 0.007 | 1.13 | 0.0 | 0.06 | 11.54 | 0.01 | 2.171 | 11.98 | 0.73 | 11.3 | 88.3 | 0.4 | -4.06 | 0.78 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109824 | 14368 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 6Jii | 9834 | 2023-05-05 | 2019-02-21 | 4.2 | 4.38 | — | 4.1 | 0.008 | 1.12 | 0.0 | 0.06 | 11.41 | 0.01 | 2.208 | 7.63 | 0.57 | 11.2 | 88.4 | 0.4 | -4.07 | 0.78 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115028 | 15012 | 16 | 0 | 16 | 0 | 0 | logfile |